Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 20000)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 20000)	% of Background Sequences with Motif
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e-149	-3.454e+02	0.0000	578.0	2.89%	14.0	0.07%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e-44	-1.018e+02	0.0000	967.0	4.83%	443.4	2.26%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e-43	-1.007e+02	0.0000	3724.0	18.62%	2650.9	13.49%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e-40	-9.234e+01	0.0000	2795.0	13.98%	1898.2	9.66%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e-31	-7.181e+01	0.0000	5075.0	25.37%	4016.7	20.44%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e-30	-6.952e+01	0.0000	2368.0	11.84%	1643.8	8.36%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e-28	-6.645e+01	0.0000	5731.0	28.66%	4656.7	23.69%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e-24	-5.747e+01	0.0000	2622.0	13.11%	1922.5	9.78%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-20	-4.637e+01	0.0000	2115.0	10.57%	1547.3	7.87%
bZIP18(bZIP)/colamp-bZIP18-DAP-Seq(GSE60143)/Homer	KGMCAGCTND	1e-19	-4.548e+01	0.0000	9738.0	48.69%	8662.6	44.08%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e-18	-4.320e+01	0.0000	3057.0	15.29%	2395.2	12.19%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e-17	-4.087e+01	0.0000	3396.0	16.98%	2717.9	13.83%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-14	-3.363e+01	0.0000	1478.0	7.39%	1073.5	5.46%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-13	-3.147e+01	0.0000	1350.0	6.75%	976.9	4.97%
At1g25550(G2like)/colamp-At1g25550-DAP-Seq(GSE60143)/Homer	NAGATTCY	1e-13	-3.029e+01	0.0000	1592.0	7.96%	1191.8	6.06%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e-12	-2.949e+01	0.0000	1838.0	9.19%	1411.6	7.18%
At2g01060(G2like)/colamp-At2g01060-DAP-Seq(GSE60143)/Homer	AGATKCBNWW	1e-12	-2.911e+01	0.0000	4572.0	22.86%	3906.9	19.88%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e-12	-2.853e+01	0.0000	943.0	4.71%	650.0	3.31%
Unknown2/Drosophila-Promoters/Homer	CATCMCTA	1e-11	-2.708e+01	0.0000	2133.0	10.66%	1690.6	8.60%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e-11	-2.565e+01	0.0000	3455.0	17.27%	2905.1	14.78%
At3g24120(G2like)/col-At3g24120-DAP-Seq(GSE60143)/Homer	NWWAGMATMW	1e-10	-2.513e+01	0.0000	4908.0	24.54%	4266.9	21.71%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-9	-2.208e+01	0.0000	1476.0	7.38%	1145.7	5.83%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-9	-2.174e+01	0.0000	439.0	2.20%	270.2	1.37%
NGA4(ABI3VP1)/col-NGA4-DAP-Seq(GSE60143)/Homer	TKNTCAGGTG	1e-9	-2.088e+01	0.0000	4303.0	21.52%	3749.7	19.08%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e-8	-1.966e+01	0.0000	129.0	0.65%	50.4	0.26%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-8	-1.964e+01	0.0000	285.0	1.43%	159.7	0.81%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e-8	-1.855e+01	0.0000	2877.0	14.38%	2447.7	12.45%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e-7	-1.811e+01	0.0000	906.0	4.53%	675.0	3.43%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-7	-1.804e+01	0.0000	3488.0	17.44%	3021.4	15.37%
TCP3(TCP)/colamp-TCP3-DAP-Seq(GSE60143)/Homer	WGTGGTCCCAAHWWW	1e-7	-1.686e+01	0.0000	243.0	1.21%	136.9	0.70%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-7	-1.668e+01	0.0000	1971.0	9.86%	1635.3	8.32%
At3g12730(G2like)/colamp-At3g12730-DAP-Seq(GSE60143)/Homer	AAGATTCT	1e-7	-1.656e+01	0.0000	1996.0	9.98%	1659.7	8.45%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e-7	-1.629e+01	0.0000	1252.0	6.26%	991.5	5.05%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e-7	-1.626e+01	0.0000	984.0	4.92%	755.9	3.85%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e-7	-1.612e+01	0.0000	684.0	3.42%	497.4	2.53%
TCP17(TCP)/col-TCP17-DAP-Seq(GSE60143)/Homer	GTGGTCCCCA	1e-6	-1.607e+01	0.0000	64.0	0.32%	17.9	0.09%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-6	-1.600e+01	0.0000	8860.0	44.30%	8199.7	41.72%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e-6	-1.592e+01	0.0000	5740.0	28.70%	5185.0	26.38%
SPL9(SBP)/colamp-SPL9-DAP-Seq(GSE60143)/Homer	BTGTACTT	1e-6	-1.545e+01	0.0000	2702.0	13.51%	2321.1	11.81%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e-6	-1.476e+01	0.0000	2529.0	12.65%	2169.7	11.04%
AT4G37180(G2like)/col-AT4G37180-DAP-Seq(GSE60143)/Homer	AGAATCTTNN	1e-6	-1.433e+01	0.0000	1754.0	8.77%	1461.9	7.44%
AT3G51470(DBP)/col-AT3G51470-DAP-Seq(GSE60143)/Homer	TTWHGGTGCACC	1e-6	-1.425e+01	0.0000	1833.0	9.16%	1534.2	7.81%
Tal1	CATCTG	1e-6	-1.416e+01	0.0000	2589.0	12.95%	2232.8	11.36%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e-5	-1.366e+01	0.0000	743.0	3.72%	563.9	2.87%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e-5	-1.316e+01	0.0000	7140.0	35.70%	6581.1	33.49%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e-5	-1.302e+01	0.0000	1897.0	9.49%	1606.5	8.17%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e-5	-1.276e+01	0.0001	181.0	0.91%	102.7	0.52%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-5	-1.263e+01	0.0001	1237.0	6.19%	1009.7	5.14%
MYB3R4(MYB)/col-MYB3R4-DAP-Seq(GSE60143)/Homer	AWWTAACCGTTR	1e-5	-1.257e+01	0.0001	156.0	0.78%	84.3	0.43%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-5	-1.246e+01	0.0001	1243.0	6.21%	1016.9	5.17%
Unknown3/Drosophila-Promoters/Homer	ACVAKCTGGCAGCGC	1e-5	-1.226e+01	0.0001	171.0	0.85%	96.4	0.49%
At3g04030(G2like)/col-At3g04030-DAP-Seq(GSE60143)/Homer	DRGAATCT	1e-5	-1.212e+01	0.0001	1329.0	6.64%	1097.5	5.58%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e-5	-1.200e+01	0.0001	245.0	1.23%	154.6	0.79%
MYB51(MYB)/col-MYB51-DAP-Seq(GSE60143)/Homer	GGTAGGTG	1e-5	-1.187e+01	0.0001	1078.0	5.39%	873.0	4.44%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e-5	-1.180e+01	0.0001	366.0	1.83%	253.6	1.29%
ZML1(C2C2gata)/colamp-ZML1-DAP-Seq(GSE60143)/Homer	ATCWYRACCGTTSRW	1e-5	-1.164e+01	0.0001	17.0	0.08%	0.9	0.00%
AT1G49560(G2like)/colamp-AT1G49560-DAP-Seq(GSE60143)/Homer	GAWTCTNWDA	1e-5	-1.160e+01	0.0001	1892.0	9.46%	1618.7	8.24%
MYB63(MYB)/col-MYB63-DAP-Seq(GSE60143)/Homer	BHYACCWACCHH	1e-4	-1.143e+01	0.0002	607.0	3.03%	460.2	2.34%
MYB3R1(MYB)/col-MYB3R1-DAP-Seq(GSE60143)/Homer	WWDTDACCGTTR	1e-4	-1.138e+01	0.0002	288.0	1.44%	191.5	0.97%
SPL15(SBP)/colamp-SPL15-DAP-Seq(GSE60143)/Homer	WDWMMGTACADW	1e-4	-1.115e+01	0.0002	1606.0	8.03%	1360.0	6.92%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e-4	-1.083e+01	0.0003	129.0	0.65%	69.3	0.35%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e-4	-1.060e+01	0.0004	2136.0	10.68%	1857.1	9.45%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e-4	-1.049e+01	0.0004	6068.0	30.34%	5599.8	28.49%
GATA6(C2C2gata)/col200-GATA6-DAP-Seq(GSE60143)/Homer	TAGATCTARAHH	1e-4	-1.009e+01	0.0006	158.0	0.79%	93.7	0.48%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-4	-9.803e+00	0.0008	1697.0	8.48%	1460.2	7.43%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-4	-9.627e+00	0.0009	1380.0	6.90%	1170.4	5.96%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-4	-9.521e+00	0.0010	2106.0	10.53%	1844.7	9.39%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-4	-9.513e+00	0.0010	252.0	1.26%	170.8	0.87%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e-4	-9.464e+00	0.0010	409.0	2.04%	302.8	1.54%
TSO1(CPP)/col-TSO1-DAP-Seq(GSE60143)/Homer	RAATTTRAAW	1e-3	-8.998e+00	0.0016	166.0	0.83%	103.5	0.53%
SPL5(SBP)/colamp-SPL5-DAP-Seq(GSE60143)/Homer	NNHGTACGGHNN	1e-3	-8.956e+00	0.0017	267.0	1.33%	185.9	0.95%
At1g68670(G2like)/colamp-At1g68670-DAP-Seq(GSE60143)/Homer	WNWWHNRAAGATTCT	1e-3	-8.755e+00	0.0020	577.0	2.89%	453.0	2.31%
Initiator/Drosophila-Promoters/Homer	NTCAGTYG	1e-3	-8.723e+00	0.0021	3620.0	18.10%	3287.3	16.73%
MYB62(MYB)/colamp-MYB62-DAP-Seq(GSE60143)/Homer	NTACCTAACT	1e-3	-8.622e+00	0.0022	1776.0	8.88%	1549.4	7.88%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-3	-8.555e+00	0.0024	267.0	1.33%	187.9	0.96%
WUS1(Homeobox)/colamp-WUS1-DAP-Seq(GSE60143)/Homer	CAWTCATTCA	1e-3	-8.251e+00	0.0032	686.0	3.43%	554.9	2.82%
HLH-1(bHLH)/cElegans-Embryo-HLH1-ChIP-Seq(modEncode)/Homer	RACAGCTGTTBH	1e-3	-8.212e+00	0.0032	1316.0	6.58%	1128.3	5.74%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-3	-8.163e+00	0.0034	2344.0	11.72%	2088.2	10.63%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e-3	-7.905e+00	0.0043	1314.0	6.57%	1130.2	5.75%
AT5G25475(ABI3VP1)/col-AT5G25475-DAP-Seq(GSE60143)/Homer	RNNRNCAAGCADNDB	1e-3	-7.662e+00	0.0054	1774.0	8.87%	1561.7	7.95%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e-3	-7.581e+00	0.0058	909.0	4.54%	762.0	3.88%
Unknown2/Arabidopsis-Promoters/Homer	AAACGACGTCGTTTT	1e-3	-7.530e+00	0.0060	11.0	0.06%	0.0	0.00%
AT1G20910(ARID)/col-AT1G20910-DAP-Seq(GSE60143)/Homer	THAATTRAWN	1e-3	-7.525e+00	0.0060	1653.0	8.27%	1450.4	7.38%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e-3	-7.434e+00	0.0065	3462.0	17.31%	3162.8	16.09%
BZR1(BZR)/col-BZR1-DAP-Seq(GSE60143)/Homer	NNCRCACGTGCG	1e-3	-7.432e+00	0.0065	97.0	0.48%	56.0	0.28%
BOS1(MYB)/col-BOS1-DAP-Seq(GSE60143)/Homer	NNRCCTAACT	1e-3	-7.296e+00	0.0073	1272.0	6.36%	1099.1	5.59%
AT1G24250(Orphan)/col-AT1G24250-DAP-Seq(GSE60143)/Homer	KTDGTTGGTDGTTGG	1e-3	-7.200e+00	0.0079	377.0	1.88%	289.7	1.47%
At5g62940(C2C2dof)/col-At5g62940-DAP-Seq(GSE60143)/Homer	WHWHHACTTTTT	1e-3	-7.198e+00	0.0079	5702.0	28.51%	5321.8	27.08%
AT1G19040(NAC)/col-AT1G19040-DAP-Seq(GSE60143)/Homer	CTTGNDNHNCAAGYW	1e-3	-7.168e+00	0.0080	109.0	0.55%	65.7	0.33%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e-3	-7.152e+00	0.0080	334.0	1.67%	252.4	1.28%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e-3	-6.942e+00	0.0098	3493.0	17.46%	3202.7	16.30%
AT5G23930(mTERF)/col-AT5G23930-DAP-Seq(GSE60143)/Homer	GGCGGCTG	1e-3	-6.941e+00	0.0098	2345.0	11.72%	2110.7	10.74%
CAMTA1(CAMTA)/col-CAMTA1-DAP-Seq(GSE60143)/Homer	WWAACGCGTT	1e-3	-6.920e+00	0.0098	361.0	1.80%	277.3	1.41%
bZIP52(bZIP)/colamp-bZIP52-DAP-Seq(GSE60143)/Homer	NDNHCAGCTGTCANN	1e-2	-6.857e+00	0.0103	2355.0	11.77%	2121.4	10.79%
TCP1(TCP)/col-TCP1-DAP-Seq(GSE60143)/Homer	GGGGGCCCMMCN	1e-2	-6.846e+00	0.0103	422.0	2.11%	331.8	1.69%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e-2	-6.838e+00	0.0103	2532.0	12.66%	2289.3	11.65%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e-2	-6.769e+00	0.0109	195.0	0.97%	136.3	0.69%
Unknown5/Drosophila-Promoters/Homer	GCTGATAASV	1e-2	-6.666e+00	0.0120	1075.0	5.38%	925.2	4.71%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e-2	-6.547e+00	0.0134	3169.0	15.85%	2901.1	14.76%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e-2	-6.511e+00	0.0137	547.0	2.73%	445.5	2.27%
At4g18890(BZR)/col-At4g18890-DAP-Seq(GSE60143)/Homer	NDBRCACGTGYR	1e-2	-6.468e+00	0.0142	186.0	0.93%	130.3	0.66%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e-2	-6.360e+00	0.0156	321.0	1.60%	246.7	1.26%
ASL18(LOBAS2)/colamp-ASL18-DAP-Seq(GSE60143)/Homer	CCGGAAAWTCMGGAR	1e-2	-6.320e+00	0.0161	2414.0	12.07%	2187.3	11.13%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e-2	-6.275e+00	0.0167	366.0	1.83%	286.0	1.46%
ERF10(AP2EREBP)/col-ERF10-DAP-Seq(GSE60143)/Homer	RTGGCGGCGG	1e-2	-6.263e+00	0.0167	686.0	3.43%	573.2	2.92%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-2	-6.214e+00	0.0174	783.0	3.91%	662.3	3.37%
AT5G02460(C2C2dof)/col-AT5G02460-DAP-Seq(GSE60143)/Homer	CHCCTTTT	1e-2	-5.968e+00	0.0221	3590.0	17.95%	3317.5	16.88%
HSFA6B(HSF)/colamp-HSFA6B-DAP-Seq(GSE60143)/Homer	NTTCTAGAANHTTCT	1e-2	-5.912e+00	0.0231	553.0	2.77%	457.0	2.33%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e-2	-5.894e+00	0.0233	102.0	0.51%	64.7	0.33%
Unknown6/Drosophila-Promoters/Homer	AATTTTAAAA	1e-2	-5.790e+00	0.0256	856.0	4.28%	735.0	3.74%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e-2	-5.774e+00	0.0258	1158.0	5.79%	1014.7	5.16%
At1g69690(TCP)/colamp-At1g69690-DAP-Seq(GSE60143)/Homer	NHGTGGGGCCCACHW	1e-2	-5.601e+00	0.0304	333.0	1.67%	262.9	1.34%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e-2	-5.576e+00	0.0309	2539.0	12.70%	2321.6	11.81%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e-2	-5.565e+00	0.0310	270.0	1.35%	207.1	1.05%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e-2	-5.538e+00	0.0315	539.0	2.70%	447.9	2.28%
TRP2(MYBrelated)/colamp-TRP2-DAP-Seq(GSE60143)/Homer	TAAACCCT	1e-2	-5.521e+00	0.0318	220.0	1.10%	165.0	0.84%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e-2	-5.453e+00	0.0338	684.0	3.42%	580.9	2.96%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e-2	-5.419e+00	0.0346	541.0	2.71%	450.7	2.29%
ANL2(HB)/col-ANL2-DAP-Seq(GSE60143)/Homer	CATTAATTGC	1e-2	-5.403e+00	0.0349	532.0	2.66%	442.3	2.25%
PTF1(TCP)/colamp-PTF1-DAP-Seq(GSE60143)/Homer	RDDGGGACCACA	1e-2	-5.373e+00	0.0356	92.0	0.46%	58.6	0.30%
DREF/Drosophila-Promoters/Homer	AVYTATCGATAD	1e-2	-5.371e+00	0.0356	22.0	0.11%	7.2	0.04%
At2g45680(TCP)/colamp-At2g45680-DAP-Seq(GSE60143)/Homer	GTGGGNCCCACNDND	1e-2	-5.319e+00	0.0370	93.0	0.46%	59.8	0.30%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e-2	-5.305e+00	0.0372	208.0	1.04%	155.1	0.79%
Unknown4/Arabidopsis-Promoters/Homer	CKTCKTCTTY	1e-2	-5.229e+00	0.0399	1237.0	6.19%	1096.7	5.58%
ATY19(MYB)/col-ATY19-DAP-Seq(GSE60143)/Homer	YYCACCWACCAT	1e-2	-5.224e+00	0.0399	872.0	4.36%	756.4	3.85%
FAR1(FAR1)/col-FAR1-DAP-Seq(GSE60143)/Homer	TKNNNYYCACGCGCY	1e-2	-5.079e+00	0.0456	78.0	0.39%	48.9	0.25%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e-2	-5.010e+00	0.0484	4454.0	22.27%	4174.1	21.24%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e-2	-4.996e+00	0.0487	313.0	1.57%	249.2	1.27%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e-2	-4.978e+00	0.0492	389.0	1.94%	317.5	1.62%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e-2	-4.962e+00	0.0496	1962.0	9.81%	1785.5	9.09%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e-2	-4.960e+00	0.0496	732.0	3.66%	630.3	3.21%
ZIM(C2C2gata)/col-ZIM-DAP-Seq(GSE60143)/Homer	ATCSRACGGTYRAGA	1e-2	-4.952e+00	0.0496	12.0	0.06%	2.3	0.01%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-2	-4.890e+00	0.0521	480.0	2.40%	400.4	2.04%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e-2	-4.852e+00	0.0537	3624.0	18.12%	3378.9	17.19%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e-2	-4.845e+00	0.0538	576.0	2.88%	488.7	2.49%
TOD6?/SacCer-Promoters/Homer	GCGATGAGMT	1e-2	-4.813e+00	0.0551	224.0	1.12%	172.7	0.88%
Zelda(Zf)/Embryo-zld-ChIP-Seq(GSE65441)/Homer	KBCTACCTGW	1e-2	-4.806e+00	0.0551	546.0	2.73%	461.8	2.35%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e-2	-4.798e+00	0.0551	786.0	3.93%	682.8	3.47%
At4g16750(AP2EREBP)/col-At4g16750-DAP-Seq(GSE60143)/Homer	HACCGACAHA	1e-2	-4.715e+00	0.0594	500.0	2.50%	420.7	2.14%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e-2	-4.687e+00	0.0607	239.0	1.20%	186.5	0.95%
MYB116(MYB)/colamp-MYB116-DAP-Seq(GSE60143)/Homer	AGTTAGGCAN	1e-2	-4.675e+00	0.0610	968.0	4.84%	853.8	4.34%
MYB3R5(MYB)/col-MYB3R5-DAP-Seq(GSE60143)/Homer	THYAACGGTHAWAWT	1e-2	-4.670e+00	0.0610	66.0	0.33%	40.5	0.21%
MYB4(MYB)/col200-MYB4-DAP-Seq(GSE60143)/Homer	WAGKTAGGTARR	1e-2	-4.615e+00	0.0638	751.0	3.75%	652.7	3.32%
ARF2(ARF)/col-ARF2-DAP-Seq(GSE60143)/Homer	TTGTCGGMWN	1e-2	-4.612e+00	0.0638	4267.0	21.34%	4005.4	20.38%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e-1	-4.568e+00	0.0660	719.0	3.60%	623.1	3.17%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e-1	-4.567e+00	0.0660	418.0	2.09%	347.0	1.77%
MYB101(MYB)/colamp-MYB101-DAP-Seq(GSE60143)/Homer	TAACNRMY	1e-1	-4.478e+00	0.0712	3258.0	16.29%	3036.8	15.45%
MYB105(MYB)/colamp-MYB105-DAP-Seq(GSE60143)/Homer	RATWCCGTTA	1e-1	-4.456e+00	0.0724	753.0	3.77%	656.1	3.34%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e-1	-4.400e+00	0.0760	61.0	0.30%	37.2	0.19%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e-1	-4.388e+00	0.0764	169.0	0.84%	127.4	0.65%
AT2G33550(Trihelix)/colamp-AT2G33550-DAP-Seq(GSE60143)/Homer	TTTAAGGGCAYTTTT	1e-1	-4.297e+00	0.0831	2920.0	14.60%	2717.0	13.82%
LBD18(LOBAS2)/colamp-LBD18-DAP-Seq(GSE60143)/Homer	CKGAWWTTCHGS	1e-1	-4.216e+00	0.0895	3766.0	18.83%	3533.3	17.98%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e-1	-4.158e+00	0.0943	603.0	3.02%	521.4	2.65%
ARF16(ARF)/col-ARF16-DAP-Seq(GSE60143)/Homer	ATTTTACGAT	1e-1	-4.158e+00	0.0943	136.0	0.68%	100.4	0.51%
DEL1(E2FDP)/colamp-DEL1-DAP-Seq(GSE60143)/Homer	TTCCCGCCAA	1e-1	-4.125e+00	0.0962	19.0	0.10%	7.3	0.04%
HSF21(HSF)/col-HSF21-DAP-Seq(GSE60143)/Homer	CTTCTAGAAGMTTYW	1e-1	-4.110e+00	0.0969	25.0	0.12%	11.6	0.06%
ANAC071(NAC)/col-ANAC071-DAP-Seq(GSE60143)/Homer	DNCKTNDNNNHNAAG	1e-1	-4.066e+00	0.1007	928.0	4.64%	825.0	4.20%
AT5G60130(ABI3VP1)/col-AT5G60130-DAP-Seq(GSE60143)/Homer	WTTYTAAGVAAA	1e-1	-4.061e+00	0.1007	2776.0	13.88%	2584.6	13.15%
At3g09600(MYBrelated)/colamp-At3g09600-DAP-Seq(GSE60143)/Homer	AAAATATCTT	1e-1	-4.011e+00	0.1050	498.0	2.49%	426.3	2.17%
bHLH122(bHLH)/col100-bHLH122-DAP-Seq(GSE60143)/Homer	NDDCAASTTGHHNWW	1e-1	-4.010e+00	0.1050	1110.0	5.55%	997.3	5.07%
ANAC083(NAC)/col-ANAC083-DAP-Seq(GSE60143)/Homer	CKTRWNNNWYAMGTA	1e-1	-3.927e+00	0.1128	745.0	3.72%	656.2	3.34%
PLT3(AP2EREBP)/col-PLT3-DAP-Seq(GSE60143)/Homer	GCACGNWTHYCGAGG	1e-1	-3.887e+00	0.1167	60.0	0.30%	38.6	0.20%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e-1	-3.877e+00	0.1171	1473.0	7.36%	1343.1	6.83%
CELF2(RRM)/JSL1-CELF2-CLIP-Seq(GSE71264)/Homer	RGTGTCAG	1e-1	-3.859e+00	0.1186	483.0	2.42%	414.1	2.11%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e-1	-3.829e+00	0.1214	1574.0	7.87%	1440.9	7.33%
bHLH28(bHLH)/col-bHLH28-DAP-Seq(GSE60143)/Homer	NHHTGTACGGAH	1e-1	-3.768e+00	0.1283	138.0	0.69%	104.1	0.53%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e-1	-3.758e+00	0.1288	831.0	4.15%	739.1	3.76%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-1	-3.754e+00	0.1288	1650.0	8.25%	1514.5	7.71%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e-1	-3.754e+00	0.1288	1385.0	6.93%	1262.3	6.42%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-1	-3.704e+00	0.1336	1717.0	8.58%	1579.2	8.04%
HDG7(HB)/col-HDG7-DAP-Seq(GSE60143)/Homer	WGCATTTAATGC	1e-1	-3.578e+00	0.1506	189.0	0.95%	150.0	0.76%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e-1	-3.525e+00	0.1579	142.0	0.71%	109.2	0.56%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e-1	-3.523e+00	0.1579	2834.0	14.17%	2655.7	13.51%
ANAC017(NAC)/colamp-ANAC017-DAP-Seq(GSE60143)/Homer	TMCTTGNNNNNCAAG	1e-1	-3.517e+00	0.1579	92.0	0.46%	66.4	0.34%
ANAC070(NAC)/colamp-ANAC070-DAP-Seq(GSE60143)/Homer	CTTRHDNHNBAAGHW	1e-1	-3.415e+00	0.1731	1286.0	6.43%	1175.5	5.98%
MYB99(MYB)/colamp-MYB99-DAP-Seq(GSE60143)/Homer	GGTAGGTG	1e-1	-3.356e+00	0.1827	1133.0	5.67%	1031.7	5.25%
MYB61(MYB)/colamp-MYB61-DAP-Seq(GSE60143)/Homer	HCYACCTACC	1e-1	-3.334e+00	0.1858	1921.0	9.61%	1783.1	9.07%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e-1	-3.311e+00	0.1889	551.0	2.76%	484.1	2.46%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e-1	-3.251e+00	0.1996	770.0	3.85%	690.5	3.51%
MYB94(MYB)/col-MYB94-DAP-Seq(GSE60143)/Homer	WGGTRGTTGGKA	1e-1	-3.217e+00	0.2052	586.0	2.93%	518.3	2.64%
HAP3(CCAATHAP3)/col-HAP3-DAP-Seq(GSE60143)/Homer	TGATGGAW	1e-1	-3.192e+00	0.2093	393.0	1.97%	339.2	1.73%
GT1(Trihelix)/col-GT1-DAP-Seq(GSE60143)/Homer	TTAACCATGGTTAAD	1e-1	-3.181e+00	0.2104	18.0	0.09%	8.6	0.04%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-1	-3.124e+00	0.2217	2561.0	12.80%	2404.1	12.23%
E2FA(E2FDP)/colamp-E2FA-DAP-Seq(GSE60143)/Homer	WWTGGCGCCAWWWNN	1e-1	-3.050e+00	0.2373	502.0	2.51%	442.5	2.25%
MYB70(MYB)/col-MYB70-DAP-Seq(GSE60143)/Homer	WTAACNGTTA	1e-1	-3.047e+00	0.2373	2218.0	11.09%	2076.5	10.57%
MYB77(MYB)/col-MYB77-DAP-Seq(GSE60143)/Homer	NYAACBGYMC	1e-1	-3.047e+00	0.2373	1961.0	9.80%	1829.1	9.31%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-1	-3.030e+00	0.2382	4661.0	23.30%	4441.0	22.60%
AT1G01250(AP2EREBP)/col-AT1G01250-DAP-Seq(GSE60143)/Homer	YCACCGACAHTW	1e-1	-3.005e+00	0.2429	46.0	0.23%	30.0	0.15%
EIN3(EIL)/col-EIN3-DAP-Seq(GSE60143)/Homer	ARATTCAATGWATYT	1e-1	-2.989e+00	0.2455	148.0	0.74%	118.8	0.60%
GRF9(GRF)/colamp-GRF9-DAP-Seq(GSE60143)/Homer	NWCTGACANNNNNNN	1e-1	-2.870e+00	0.2751	1377.0	6.88%	1274.7	6.49%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e-1	-2.859e+00	0.2767	2428.0	12.14%	2284.5	11.62%
SPL1(SBP)/colamp-SPL1-DAP-Seq(GSE60143)/Homer	HYGTACDTWH	1e-1	-2.854e+00	0.2767	2077.0	10.38%	1946.2	9.90%
CES-1(Homeobox)/cElegans-L1-CES1-ChIP-Seq(modEncode)/Homer	AAATTSAATTTN	1e-1	-2.852e+00	0.2767	579.0	2.90%	517.3	2.63%
HSFA1E(HSF)/col-HSFA1E-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e-1	-2.845e+00	0.2767	75.0	0.38%	55.0	0.28%
WRKY22(WRKY)/colamp-WRKY22-DAP-Seq(GSE60143)/Homer	WWAAAGTCAACK	1e-1	-2.822e+00	0.2813	743.0	3.72%	672.3	3.42%
SeqBias: CG bias	SSSSSSSSSS	1e-1	-2.779e+00	0.2921	13721.0	68.61%	13340.7	67.88%
MYB10(MYB)/col-MYB10-DAP-Seq(GSE60143)/Homer	YCCACCTACCHH	1e-1	-2.758e+00	0.2967	490.0	2.45%	435.6	2.22%
GEI-11(Myb?)/cElegans-L4-GEI11-ChIP-Seq(modEncode)/Homer	CCGACAYYTYACGGG	1e-1	-2.750e+00	0.2977	46.0	0.23%	31.5	0.16%
MYB58(MYB)/colamp-MYB58-DAP-Seq(GSE60143)/Homer	YYYACCWACC	1e-1	-2.746e+00	0.2977	1175.0	5.88%	1084.3	5.52%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e-1	-2.718e+00	0.3043	1279.0	6.40%	1184.9	6.03%
SOL1(CPP)/colamp-SOL1-DAP-Seq(GSE60143)/Homer	ATTTAAATHN	1e-1	-2.708e+00	0.3057	1873.0	9.37%	1754.7	8.93%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e-1	-2.676e+00	0.3141	194.0	0.97%	162.8	0.83%
AT2G15740(C2H2)/col-AT2G15740-DAP-Seq(GSE60143)/Homer	DHNDWATCGATD	1e-1	-2.668e+00	0.3151	613.0	3.06%	552.7	2.81%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e-1	-2.664e+00	0.3151	389.0	1.94%	342.7	1.74%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-1	-2.629e+00	0.3246	1498.0	7.49%	1396.9	7.11%
WIP5(C2H2)/colamp-WIP5-DAP-Seq(GSE60143)/Homer	TDTTCTCMAGGT	1e-1	-2.613e+00	0.3280	1710.0	8.55%	1600.1	8.14%
SFP1/SacCer-Promoters/Homer	DDAAAAATTTTY	1e-1	-2.606e+00	0.3289	85.0	0.43%	65.7	0.33%
AT2G20400(G2like)/colamp-AT2G20400-DAP-Seq(GSE60143)/Homer	DNVGAATATTCBNHN	1e-1	-2.580e+00	0.3359	140.0	0.70%	114.6	0.58%
AT5G45580(G2like)/colamp-AT5G45580-DAP-Seq(GSE60143)/Homer	ADRGAATCTH	1e-1	-2.574e+00	0.3364	2036.0	10.18%	1915.1	9.74%
MYB67(MYB)/col-MYB67-DAP-Seq(GSE60143)/Homer	YYYACCTAAC	1e-1	-2.561e+00	0.3392	1138.0	5.69%	1053.9	5.36%
WRKY17(WRKY)/colamp-WRKY17-DAP-Seq(GSE60143)/Homer	GCGTTGACTTTT	1e-1	-2.560e+00	0.3392	9.0	0.04%	4.0	0.02%
ATY13(MYB)/col-ATY13-DAP-Seq(GSE60143)/Homer	YYYAACYRHH	1e-1	-2.551e+00	0.3392	4971.0	24.86%	4763.1	24.24%
WRKY46(WRKY)/colamp-WRKY46-DAP-Seq(GSE60143)/Homer	AAAGTCAACGSN	1e-1	-2.529e+00	0.3452	73.0	0.36%	55.4	0.28%
AIL7(AP2EREBP)/colamp-AIL7-DAP-Seq(GSE60143)/Homer	KCACRAWTYYCGAGG	1e-1	-2.493e+00	0.3560	491.0	2.46%	441.0	2.24%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e-1	-2.485e+00	0.3574	1729.0	8.64%	1622.7	8.26%
ANAC079(NAC)/colamp-ANAC079-DAP-Seq(GSE60143)/Homer	TACACGCAACCT	1e-1	-2.477e+00	0.3587	398.0	1.99%	353.9	1.80%
AtHB32(ZFHD)/col200-AtHB32-DAP-Seq(GSE60143)/Homer	CGAATTAT	1e-1	-2.405e+00	0.3835	1527.0	7.63%	1430.5	7.28%
At1g75490(AP2EREBP)/colamp-At1g75490-DAP-Seq(GSE60143)/Homer	CACCGMCT	1e-1	-2.363e+00	0.3979	1774.0	8.87%	1669.3	8.49%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e-1	-2.347e+00	0.4026	1900.0	9.50%	1791.6	9.12%
ANAC011(NAC)/col-ANAC011-DAP-Seq(GSE60143)/Homer	TDCTTGYRNNDCAAG	1e-1	-2.345e+00	0.4026	413.0	2.07%	369.0	1.88%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e-1	-2.337e+00	0.4029	27.0	0.14%	17.0	0.09%
LBD19(LOBAS2)/colamp-LBD19-DAP-Seq(GSE60143)/Homer	CCKGAAWTTCMGGAW	1e-1	-2.313e+00	0.4109	2597.0	12.98%	2466.3	12.55%
MYB39(MYB)/col-MYB39-DAP-Seq(GSE60143)/Homer	WWAARKTAGGTGRAA	1e-1	-2.307e+00	0.4117	154.0	0.77%	129.3	0.66%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-2.299e+00	0.4130	18.0	0.09%	10.7	0.05%
SeqBias: GCW-triplet	GCWGCWGCWGCW	1e0	-2.283e+00	0.4180	19977.0	99.89%	19619.7	99.83%
AGL15(MADS)/col-AGL15-DAP-Seq(GSE60143)/Homer	TTTCCHWATWDGGAA	1e0	-2.274e+00	0.4196	206.0	1.03%	178.0	0.91%
SGR5(C2H2)/colamp-SGR5-DAP-Seq(GSE60143)/Homer	TTTGTCTTTTTT	1e0	-2.268e+00	0.4203	1024.0	5.12%	951.4	4.84%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-2.239e+00	0.4307	1771.0	8.86%	1670.2	8.50%
EGL-5(Homeobox)/cElegans-L3-EGL5-ChIP-Seq(modEncode)/Homer	ATTTAATGGG	1e0	-2.233e+00	0.4317	1863.0	9.31%	1759.1	8.95%
Unknown4/Drosophila-Promoters/Homer	AAAAATACCRMA	1e0	-2.224e+00	0.4337	129.0	0.65%	107.5	0.55%
DEAR3(AP2EREBP)/colamp-DEAR3-DAP-Seq(GSE60143)/Homer	BCACCGACAWNNNNN	1e0	-2.118e+00	0.4801	176.0	0.88%	151.1	0.77%
NST1(NAC)/colamp-NST1-DAP-Seq(GSE60143)/Homer	WRCTTRWWNWWYAAG	1e0	-2.107e+00	0.4830	976.0	4.88%	909.7	4.63%
FHY3(FAR1)/Arabidopsis-FHY3-ChIP-Seq(GSE30711)/Homer	HHCACGCGCBTN	1e0	-2.077e+00	0.4959	237.0	1.19%	208.7	1.06%
WRKY7(WRKY)/colamp-WRKY7-DAP-Seq(GSE60143)/Homer	AAAAGTCAACGSHWD	1e0	-2.053e+00	0.5056	3.0	0.01%	0.0	0.00%
MYB113(MYB)/col-MYB113-DAP-Seq(GSE60143)/Homer	HNDAWTCMGTTAYWN	1e0	-2.042e+00	0.5093	668.0	3.34%	616.5	3.14%
ANAC058(NAC)/col-ANAC058-DAP-Seq(GSE60143)/Homer	TWCTTGTDNNACAAG	1e0	-2.040e+00	0.5093	626.0	3.13%	576.6	2.93%
AT5G56840(MYBrelated)/colamp-AT5G56840-DAP-Seq(GSE60143)/Homer	TGGATAAGGT	1e0	-2.031e+00	0.5105	2042.0	10.21%	1939.7	9.87%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	-2.008e+00	0.5201	1116.0	5.58%	1046.5	5.32%
AtGRF6(GRF)/col-AtGRF6-DAP-Seq(GSE60143)/Homer	NTGTCAGADNNNNNN	1e0	-1.989e+00	0.5279	1631.0	8.15%	1543.2	7.85%
HSFB3(HSF)/colamp-HSFB3-DAP-Seq(GSE60143)/Homer	TTCTAGAAGMTTHTW	1e0	-1.963e+00	0.5394	9.0	0.04%	4.7	0.02%
At2g41835(C2H2)/col-At2g41835-DAP-Seq(GSE60143)/Homer	TTTGAAAA	1e0	-1.961e+00	0.5394	684.0	3.42%	633.4	3.22%
At1g13300(G2like)/col-At1g13300-DAP-Seq(GSE60143)/Homer	GAATCTWAGATTCYN	1e0	-1.946e+00	0.5442	18.0	0.09%	11.1	0.06%
AGL6(MADS)/col-AGL6-DAP-Seq(GSE60143)/Homer	TTWCCWWAWWDGGWA	1e0	-1.931e+00	0.5501	176.0	0.88%	153.2	0.78%
AT4G26030(C2H2)/col-AT4G26030-DAP-Seq(GSE60143)/Homer	BYYACCWACY	1e0	-1.832e+00	0.6049	1199.0	6.00%	1131.2	5.76%
At1g77640(AP2EREBP)/col-At1g77640-DAP-Seq(GSE60143)/Homer	TGTCGGTGGA	1e0	-1.827e+00	0.6055	124.0	0.62%	106.8	0.54%
SRS7(SRS)/colamp-SRS7-DAP-Seq(GSE60143)/Homer	HATAGGTTTH	1e0	-1.826e+00	0.6055	4726.0	23.63%	4560.7	23.21%
Pho4(bHLH)/Yeast-Pho4-ChIP-Seq(GSE29506)/Homer	AAGCACGTGBGD	1e0	-1.809e+00	0.6112	228.0	1.14%	203.9	1.04%
WRKY45(WRKY)/col-WRKY45-DAP-Seq(GSE60143)/Homer	HNNNKTTGACTWWNH	1e0	-1.797e+00	0.6164	540.0	2.70%	499.0	2.54%
GATA19(C2C2gata)/colamp-GATA19-DAP-Seq(GSE60143)/Homer	ATCSGATCVG	1e0	-1.778e+00	0.6259	61.0	0.30%	49.3	0.25%
SPL13(SBP)/col-SPL13-DAP-Seq(GSE60143)/Homer	WAHTGTACGGAH	1e0	-1.748e+00	0.6424	63.0	0.32%	51.6	0.26%
MYB92(MYB)/colamp-MYB92-DAP-Seq(GSE60143)/Homer	GGTAGGTR	1e0	-1.725e+00	0.6547	1208.0	6.04%	1143.3	5.82%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	-1.720e+00	0.6554	7.0	0.03%	3.3	0.02%
AT1G77200(AP2EREBP)/colamp-AT1G77200-DAP-Seq(GSE60143)/Homer	ACCGACAHWD	1e0	-1.700e+00	0.6655	518.0	2.59%	480.9	2.45%
HAT5(Homeobox)/colamp-HAT5-DAP-Seq(GSE60143)/Homer	DCAATWATTG	1e0	-1.689e+00	0.6703	143.0	0.71%	125.2	0.64%
AT1G76870(Trihelix)/col-AT1G76870-DAP-Seq(GSE60143)/Homer	AAAACCRGWW	1e0	-1.682e+00	0.6727	527.0	2.63%	489.0	2.49%
bHLH130(bHLH)/col-bHLH130-DAP-Seq(GSE60143)/Homer	GCAACTTG	1e0	-1.679e+00	0.6727	962.0	4.81%	907.2	4.62%
MYB33(MYB)/col-MYB33-DAP-Seq(GSE60143)/Homer	DDTYNGTTAN	1e0	-1.678e+00	0.6727	2785.0	13.93%	2675.2	13.61%
At5g22890(C2H2)/col-At5g22890-DAP-Seq(GSE60143)/Homer	NSAGGTKWTATCTGD	1e0	-1.678e+00	0.6727	48.0	0.24%	38.6	0.20%
REM19(REM)/colamp-REM19-DAP-Seq(GSE60143)/Homer	AAAAAAAA	1e0	-1.671e+00	0.6727	969.0	4.84%	914.6	4.65%
FUS3(ABI3VP1)/col-FUS3-DAP-Seq(GSE60143)/Homer	DNNWTNTGCATGKNN	1e0	-1.645e+00	0.6842	1347.0	6.73%	1280.5	6.52%
ATHB40(HB)/col-ATHB40-DAP-Seq(GSE60143)/Homer	HCAATWATTG	1e0	-1.640e+00	0.6852	855.0	4.28%	806.0	4.10%
MYB40(MYB)/col-MYB40-DAP-Seq(GSE60143)/Homer	TGGTAGGTRARA	1e0	-1.636e+00	0.6855	371.0	1.85%	341.2	1.74%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-1.621e+00	0.6931	1158.0	5.79%	1098.6	5.59%
TCX2(CPP)/colamp-TCX2-DAP-Seq(GSE60143)/Homer	NNWWTTYRAAHN	1e0	-1.617e+00	0.6931	1907.0	9.54%	1824.6	9.28%
At1g64620(C2C2dof)/colamp-At1g64620-DAP-Seq(GSE60143)/Homer	CACTTTTT	1e0	-1.607e+00	0.6976	2241.0	11.21%	2149.6	10.94%
SeqBias: A/T bias	WWWWWWWWWW	1e0	-1.603e+00	0.6977	15594.0	77.97%	15253.4	77.61%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-1.599e+00	0.6977	364.0	1.82%	336.0	1.71%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e0	-1.579e+00	0.7095	196.0	0.98%	176.1	0.90%
Unknown1/Arabidopsis-Promoters/Homer	RGGGTAWWWTHGTAA	1e0	-1.570e+00	0.7134	104.0	0.52%	90.5	0.46%
bHLH80(bHLH)/col-bHLH80-DAP-Seq(GSE60143)/Homer	NNNNDCAASTTGHNN	1e0	-1.544e+00	0.7295	1301.0	6.50%	1239.0	6.30%
TBP3(MYBrelated)/col-TBP3-DAP-Seq(GSE60143)/Homer	VYTAGGGCAN	1e0	-1.529e+00	0.7377	1128.0	5.64%	1072.8	5.46%
AT2G20110(CPP)/colamp-AT2G20110-DAP-Seq(GSE60143)/Homer	ATTYAAATHY	1e0	-1.504e+00	0.7530	1790.0	8.95%	1715.2	8.73%
caudal(Homeobox)/Drosophila-Embryos-ChIP-Chip(modEncode)/Homer	GGYCATAAAW	1e0	-1.473e+00	0.7743	999.0	5.00%	949.5	4.83%
LHY(Myb)/Seedling-LHY-ChIP-Seq(GSE52175)/Homer	ADAAATATCT	1e0	-1.454e+00	0.7865	1145.0	5.73%	1091.6	5.55%
WRKY8(WRKY)/colamp-WRKY8-DAP-Seq(GSE60143)/Homer	CGTTGACTTT	1e0	-1.432e+00	0.8009	160.0	0.80%	144.2	0.73%
VND1(NAC)/col-VND1-DAP-Seq(GSE60143)/Homer	CTTRWDNHWYAAGYW	1e0	-1.419e+00	0.8080	867.0	4.33%	823.3	4.19%
At4g32800(AP2EREBP)/colamp-At4g32800-DAP-Seq(GSE60143)/Homer	DYCACCGACAHWWWH	1e0	-1.406e+00	0.8157	70.0	0.35%	60.9	0.31%
ERF104(AP2EREBP)/col-ERF104-DAP-Seq(GSE60143)/Homer	GGCGGCGG	1e0	-1.372e+00	0.8411	1009.0	5.04%	962.8	4.90%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-1.360e+00	0.8480	159.0	0.80%	144.7	0.74%
HSFB4(HSF)/col-HSFB4-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e0	-1.349e+00	0.8548	28.0	0.14%	22.8	0.12%
ANAC075(NAC)/col-ANAC075-DAP-Seq(GSE60143)/Homer	CTTSWWNWWSAAGYT	1e0	-1.346e+00	0.8548	362.0	1.81%	338.1	1.72%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	-1.337e+00	0.8586	6.0	0.03%	3.7	0.02%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-1.334e+00	0.8586	3844.0	19.22%	3727.4	18.97%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-1.327e+00	0.8610	275.0	1.38%	255.3	1.30%
IDD5(C2H2)/colamp-IDD5-DAP-Seq(GSE60143)/Homer	TTTTGTCTTTTTBTK	1e0	-1.324e+00	0.8610	997.0	4.98%	952.7	4.85%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e0	-1.313e+00	0.8670	432.0	2.16%	406.7	2.07%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-1.310e+00	0.8670	632.0	3.16%	599.7	3.05%
AT2G40260(G2like)/colamp-AT2G40260-DAP-Seq(GSE60143)/Homer	WAAAYATTCTTT	1e0	-1.310e+00	0.8670	2484.0	12.42%	2401.0	12.22%
RAP21(AP2EREBP)/colamp-RAP21-DAP-Seq(GSE60143)/Homer	BCACCGACAHNN	1e0	-1.298e+00	0.8713	101.0	0.51%	90.1	0.46%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	-1.290e+00	0.8755	13.0	0.07%	9.7	0.05%
SVP(MADS)/col-SVP-DAP-Seq(GSE60143)/Homer	ANTTWCCHAATTTGG	1e0	-1.289e+00	0.8755	650.0	3.25%	617.4	3.14%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-1.274e+00	0.8833	514.0	2.57%	486.1	2.47%
AT3G10580(MYBrelated)/colamp-AT3G10580-DAP-Seq(GSE60143)/Homer	TACCTAACWNHW	1e0	-1.270e+00	0.8835	488.0	2.44%	461.0	2.35%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e0	-1.264e+00	0.8858	735.0	3.67%	700.1	3.56%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-1.255e+00	0.8911	14.0	0.07%	10.4	0.05%
MYB56(MYB)/colamp-MYB56-DAP-Seq(GSE60143)/Homer	HTAACGRMHY	1e0	-1.253e+00	0.8911	1083.0	5.42%	1038.4	5.28%
dof45(C2C2dof)/col-dof45-DAP-Seq(GSE60143)/Homer	NVAWAAAGTN	1e0	-1.240e+00	0.8987	4032.0	20.16%	3918.0	19.94%
WRKY21(WRKY)/colamp-WRKY21-DAP-Seq(GSE60143)/Homer	DCGTTGACTTTT	1e0	-1.226e+00	0.9078	116.0	0.58%	105.6	0.54%
ATHB53(HB)/col-ATHB53-DAP-Seq(GSE60143)/Homer	CAATAATT	1e0	-1.226e+00	0.9078	521.0	2.60%	494.8	2.52%
MYB55(MYB)/colamp-MYB55-DAP-Seq(GSE60143)/Homer	YACCWAMC	1e0	-1.211e+00	0.9154	1326.0	6.63%	1276.4	6.49%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e0	-1.191e+00	0.9308	678.0	3.39%	647.5	3.29%
AT5G22990(C2H2)/col-AT5G22990-DAP-Seq(GSE60143)/Homer	WCGAHDTCGWHN	1e0	-1.172e+00	0.9454	28.0	0.14%	23.6	0.12%
CRF10(AP2EREBP)/col100-CRF10-DAP-Seq(GSE60143)/Homer	DCCGCCGYHA	1e0	-1.167e+00	0.9468	1093.0	5.46%	1051.1	5.35%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e0	-1.161e+00	0.9502	1449.0	7.25%	1398.7	7.12%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-1.148e+00	0.9590	233.0	1.17%	218.1	1.11%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-1.111e+00	0.9924	461.0	2.31%	439.2	2.24%
Unknown3/Arabidopsis-Promoters/Homer	AYTAAACCGG	1e0	-1.090e+00	1.0000	133.0	0.66%	124.0	0.63%
ANAC005(NAC)/col-ANAC005-DAP-Seq(GSE60143)/Homer	WVCTTVTWNHABAAG	1e0	-1.068e+00	1.0000	639.0	3.19%	613.7	3.12%
MYB93(MYB)/colamp-MYB93-DAP-Seq(GSE60143)/Homer	GGTAGGTGRD	1e0	-1.057e+00	1.0000	1482.0	7.41%	1436.0	7.31%
MYB13(MYB)/col-MYB13-DAP-Seq(GSE60143)/Homer	HYCACCWACCHH	1e0	-1.035e+00	1.0000	869.0	4.35%	838.9	4.27%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e0	-1.029e+00	1.0000	5043.0	25.21%	4923.2	25.05%
At1g49010(MYBrelated)/col-At1g49010-DAP-Seq(GSE60143)/Homer	RGATAASNTT	1e0	-1.027e+00	1.0000	3398.0	16.99%	3311.8	16.85%
IDD2(C2H2)/colamp-IDD2-DAP-Seq(GSE60143)/Homer	HAVAAAAMGACAAAA	1e0	-1.023e+00	1.0000	159.0	0.80%	149.7	0.76%
ANAC092(NAC)/colamp-ANAC092-DAP-Seq(GSE60143)/Homer	WRCKTGWNNNWCAMG	1e0	-1.014e+00	1.0000	414.0	2.07%	396.6	2.02%
ERF105(AP2EREBP)/colamp-ERF105-DAP-Seq(GSE60143)/Homer	TGGCGGCT	1e0	-1.012e+00	1.0000	1579.0	7.90%	1532.4	7.80%
LCL1(MYBrelated)/colamp-LCL1-DAP-Seq(GSE60143)/Homer	NAAAATATCTWHWWN	1e0	-1.010e+00	1.0000	165.0	0.83%	155.2	0.79%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-1.006e+00	1.0000	2839.0	14.19%	2765.7	14.07%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	-9.870e-01	1.0000	50.0	0.25%	45.4	0.23%
LIN-15B(Zf)/cElegans-L3-LIN15B-ChIP-Seq(modEncode)/Homer	CARTGGAGCGCRYTTGCATT	1e0	-9.864e-01	1.0000	5.0	0.03%	3.3	0.02%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-9.849e-01	1.0000	72.0	0.36%	66.3	0.34%
SEP3(MADS)/Arabidoposis-Flower-Sep3-ChIP-Seq/Homer	CCAAAAAGGG	1e0	-9.684e-01	1.0000	1682.0	8.41%	1635.3	8.32%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-9.651e-01	1.0000	616.0	3.08%	595.0	3.03%
AGL16(MADS)/col-AGL16-DAP-Seq(GSE60143)/Homer	TWCCHWATWDGGAAA	1e0	-9.360e-01	1.0000	114.0	0.57%	107.8	0.55%
ANAC016(NAC)/col-ANAC016-DAP-Seq(GSE60143)/Homer	WNCTTGNNNNNCAMG	1e0	-9.085e-01	1.0000	871.0	4.35%	845.8	4.30%
WRKY30(WRKY)/colamp-WRKY30-DAP-Seq(GSE60143)/Homer	CGTTGACTTN	1e0	-8.955e-01	1.0000	348.0	1.74%	335.8	1.71%
SPL3(SBP)/colamp-SPL3-DAP-Seq(GSE60143)/Homer	WDTTGTACGGAH	1e0	-8.948e-01	1.0000	25.0	0.12%	22.9	0.12%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-8.890e-01	1.0000	3204.0	16.02%	3131.7	15.94%
DEL2(E2FDP)/col-DEL2-DAP-Seq(GSE60143)/Homer	WTTTCSCGCC	1e0	-8.855e-01	1.0000	480.0	2.40%	464.4	2.36%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-8.847e-01	1.0000	694.0	3.47%	673.6	3.43%
At4g01280(MYBrelated)/colamp-At4g01280-DAP-Seq(GSE60143)/Homer	AAATATCT	1e0	-8.798e-01	1.0000	615.0	3.08%	596.1	3.03%
At5g52660(MYBrelated)/colamp-At5g52660-DAP-Seq(GSE60143)/Homer	HAAAAATATCTW	1e0	-8.788e-01	1.0000	489.0	2.44%	473.5	2.41%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-8.773e-01	1.0000	289.0	1.44%	278.9	1.42%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-8.752e-01	1.0000	1404.0	7.02%	1368.4	6.96%
CAMTA5(CAMTA)/col-CAMTA5-DAP-Seq(GSE60143)/Homer	ACGCGTTTTANACRC	1e0	-8.671e-01	1.0000	260.0	1.30%	250.3	1.27%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e0	-8.545e-01	1.0000	437.0	2.19%	423.2	2.15%
LMI1(HB)/colamp-LMI1-DAP-Seq(GSE60143)/Homer	AATTATTG	1e0	-8.533e-01	1.0000	749.0	3.74%	728.8	3.71%
ANAC020(NAC)/col-ANAC020-DAP-Seq(GSE60143)/Homer	DVCKTGHNNNDCAAG	1e0	-8.365e-01	1.0000	642.0	3.21%	624.1	3.18%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e0	-8.277e-01	1.0000	1484.0	7.42%	1449.3	7.37%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-8.250e-01	1.0000	804.0	4.02%	783.3	3.99%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-8.132e-01	1.0000	590.0	2.95%	574.5	2.92%
At1g14580(C2H2)/colamp-At1g14580-DAP-Seq(GSE60143)/Homer	CASAAAAMGACAAAA	1e0	-8.062e-01	1.0000	238.0	1.19%	230.9	1.17%
VND6(NAC)/col-VND6-DAP-Seq(GSE60143)/Homer	DCTTNHTTTTYAMGY	1e0	-8.027e-01	1.0000	1201.0	6.00%	1173.4	5.97%
REB1/SacCer-Promoters/Homer	KCCGGGTAAYRR	1e0	-7.953e-01	1.0000	206.0	1.03%	199.1	1.01%
At3g45610(C2C2dof)/col-At3g45610-DAP-Seq(GSE60143)/Homer	TWACTTTTTS	1e0	-7.945e-01	1.0000	2426.0	12.13%	2375.6	12.09%
MYB81(MYB)/col-MYB81-DAP-Seq(GSE60143)/Homer	NWAACSGWTWNN	1e0	-7.887e-01	1.0000	2129.0	10.64%	2084.2	10.60%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-7.834e-01	1.0000	263.0	1.31%	255.5	1.30%
EFL-1(E2F)/cElegans-L1-EFL1-ChIP-Seq(modEncode)/Homer	TGCAARYGCGCTCYA	1e0	-7.734e-01	1.0000	22.0	0.11%	20.3	0.10%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-7.654e-01	1.0000	3420.0	17.10%	3353.2	17.06%
MYB83(MYB)/colamp-MYB83-DAP-Seq(GSE60143)/Homer	CACCAACCWH	1e0	-7.633e-01	1.0000	2226.0	11.13%	2181.2	11.10%
AGL95(ND)/col-AGL95-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e0	-7.602e-01	1.0000	106.0	0.53%	102.9	0.52%
LEP(AP2EREBP)/col-LEP-DAP-Seq(GSE60143)/Homer	CDCCGCCGTC	1e0	-7.554e-01	1.0000	250.0	1.25%	243.1	1.24%
ERF115(AP2EREBP)/colamp-ERF115-DAP-Seq(GSE60143)/Homer	WTKRCGGCGB	1e0	-7.432e-01	1.0000	1485.0	7.42%	1455.9	7.41%
AT1G23810(Orphan)/col-AT1G23810-DAP-Seq(GSE60143)/Homer	TTCTAGAAGSTTCTA	1e0	-7.401e-01	1.0000	32.0	0.16%	30.6	0.16%
PLT1(AP2EREBP)/colamp-PLT1-DAP-Seq(GSE60143)/Homer	GCACGAWTYCCGAGG	1e0	-7.320e-01	1.0000	81.0	0.40%	79.0	0.40%
SPL11(SBP)/col100-SPL11-DAP-Seq(GSE60143)/Homer	YTGTACTTBH	1e0	-7.320e-01	1.0000	759.0	3.79%	744.0	3.79%
AT1G12630(AP2EREBP)/colamp-AT1G12630-DAP-Seq(GSE60143)/Homer	TGTCGGCA	1e0	-7.310e-01	1.0000	335.0	1.68%	327.5	1.67%
CDM1(C3H)/colamp-CDM1-DAP-Seq(GSE60143)/Homer	CCGAWAWTWTCGGAN	1e0	-7.303e-01	1.0000	36.0	0.18%	34.7	0.18%
DEAR5(AP2EREBP)/col-DEAR5-DAP-Seq(GSE60143)/Homer	NDWTGTCGGTGRWDN	1e0	-7.279e-01	1.0000	84.0	0.42%	81.3	0.41%
ATHB21(HB)/colamp-ATHB21-DAP-Seq(GSE60143)/Homer	YCAATWAT	1e0	-7.177e-01	1.0000	575.0	2.88%	563.2	2.87%
NUC(C2H2)/col-NUC-DAP-Seq(GSE60143)/Homer	HAVAAAACGACAAAA	1e0	-6.943e-01	1.0000	114.0	0.57%	111.6	0.57%
SOC1(MADS)/Seedling-SOC1-ChIP-Seq(GSE45846)/Homer	TWCCAWWTWTGG	1e0	-6.867e-01	1.0000	474.0	2.37%	465.7	2.37%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-6.835e-01	1.0000	186.0	0.93%	182.3	0.93%
ERF15(AP2EREBP)/colamp-ERF15-DAP-Seq(GSE60143)/Homer	WDHAGCMGCCAT	1e0	-6.799e-01	1.0000	3115.0	15.57%	3061.8	15.58%
AT4G27900(C2C2COlike)/col-AT4G27900-DAP-Seq(GSE60143)/Homer	TCTCVACCGTTSATT	1e0	-6.768e-01	1.0000	3.0	0.01%	2.5	0.01%
MYB121(MYB)/col-MYB121-DAP-Seq(GSE60143)/Homer	YNTACCTAACWW	1e0	-6.763e-01	1.0000	378.0	1.89%	372.0	1.89%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-6.756e-01	1.0000	136.0	0.68%	133.2	0.68%
AT5G59990(C2C2COlike)/colamp-AT5G59990-DAP-Seq(GSE60143)/Homer	TCTCAACCGTTCATT	1e0	-6.460e-01	1.0000	24.0	0.12%	23.1	0.12%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-6.265e-01	1.0000	3895.0	19.48%	3833.0	19.50%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-6.253e-01	1.0000	569.0	2.84%	561.3	2.86%
SeqBias: TA-repeat	TATATATATA	1e0	-5.929e-01	1.0000	3503.0	17.52%	3451.2	17.56%
RVE1(MYBrelated)/col-RVE1-DAP-Seq(GSE60143)/Homer	AAATATCT	1e0	-5.854e-01	1.0000	629.0	3.15%	622.4	3.17%
SND3(NAC)/col-SND3-DAP-Seq(GSE60143)/Homer	CTTNHNNNDNAAGNH	1e0	-5.837e-01	1.0000	780.0	3.90%	771.9	3.93%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-5.697e-01	1.0000	1262.0	6.31%	1247.6	6.35%
At5g18450(AP2EREBP)/col-At5g18450-DAP-Seq(GSE60143)/Homer	CACCGCTT	1e0	-5.636e-01	1.0000	1769.0	8.85%	1748.0	8.89%
SeqBias: polyC-repeat	CCCCCCCCCC	1e0	-5.624e-01	1.0000	19635.0	98.17%	19297.6	98.19%
SND2(NAC)/colamp-SND2-DAP-Seq(GSE60143)/Homer	CTTVWNNNWBAAGNW	1e0	-5.612e-01	1.0000	565.0	2.83%	560.1	2.85%
VIP1(bZIP)/col-VIP1-DAP-Seq(GSE60143)/Homer	NTTGACAGCTGTCAN	1e0	-5.585e-01	1.0000	315.0	1.57%	313.6	1.60%
IDD4(C2H2)/col-IDD4-DAP-Seq(GSE60143)/Homer	TTTGTCTTTWTB	1e0	-5.484e-01	1.0000	1297.0	6.49%	1283.7	6.53%
VRN1(ABI3VP1)/col-VRN1-DAP-Seq(GSE60143)/Homer	TTTTTTTTTT	1e0	-5.433e-01	1.0000	371.0	1.85%	369.3	1.88%
BBX31(Orphan)/col-BBX31-DAP-Seq(GSE60143)/Homer	NAAAAAGTDA	1e0	-5.295e-01	1.0000	2446.0	12.23%	2417.5	12.30%
GATA20(C2C2gata)/colamp-GATA20-DAP-Seq(GSE60143)/Homer	TNGATCNDNM	1e0	-5.289e-01	1.0000	2584.0	12.92%	2553.8	12.99%
AT3G10030(Trihelix)/colamp-AT3G10030-DAP-Seq(GSE60143)/Homer	GCCGTTAA	1e0	-5.276e-01	1.0000	709.0	3.55%	704.1	3.58%
MYB73(MYB)/col-MYB73-DAP-Seq(GSE60143)/Homer	NNNNHAACNGHHDHN	1e0	-5.211e-01	1.0000	2971.0	14.85%	2935.2	14.93%
MYB49(MYB)/col-MYB49-DAP-Seq(GSE60143)/Homer	ARKTAGGTRR	1e0	-5.141e-01	1.0000	1261.0	6.30%	1250.7	6.36%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-5.042e-01	1.0000	1241.0	6.21%	1231.5	6.27%
NTM1(NAC)/col-NTM1-DAP-Seq(GSE60143)/Homer	ACTTRTARAASAAGT	1e0	-5.028e-01	1.0000	653.0	3.26%	650.5	3.31%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-5.025e-01	1.0000	99.0	0.50%	100.2	0.51%
SeqBias: CA-repeat	CACACACACA	1e0	-4.969e-01	1.0000	8498.0	42.49%	8376.3	42.62%
AT1G44830(AP2EREBP)/col-AT1G44830-DAP-Seq(GSE60143)/Homer	NCCACCGACA	1e0	-4.936e-01	1.0000	216.0	1.08%	217.3	1.11%
At2g33710(AP2EREBP)/colamp-At2g33710-DAP-Seq(GSE60143)/Homer	WTKGCGGCKR	1e0	-4.928e-01	1.0000	1921.0	9.61%	1903.6	9.69%
ERF2(AP2EREBP)/colamp-ERF2-DAP-Seq(GSE60143)/Homer	GGCGGCTG	1e0	-4.801e-01	1.0000	682.0	3.41%	680.4	3.46%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	-4.743e-01	1.0000	35.0	0.18%	36.7	0.19%
GATA15(C2C2gata)/col-GATA15-DAP-Seq(GSE60143)/Homer	KATGATCA	1e0	-4.606e-01	1.0000	1926.0	9.63%	1911.9	9.73%
HSFA6A(HSF)/col-HSFA6A-DAP-Seq(GSE60143)/Homer	RGAAGNTTCTAGAAN	1e0	-4.555e-01	1.0000	25.0	0.12%	26.4	0.13%
CUC3(NAC)/col-CUC3-DAP-Seq(GSE60143)/Homer	TRCKTGWNNNACAMG	1e0	-4.546e-01	1.0000	324.0	1.62%	326.6	1.66%
CCA(Myb)/Arabidopsis-CCA.GFP-ChIP-Seq(GSE70533)/Homer	AGATATYTTT	1e0	-4.501e-01	1.0000	980.0	4.90%	977.3	4.97%
MYB65(MYB)/colamp-MYB65-DAP-Seq(GSE60143)/Homer	RACNGTTA	1e0	-4.420e-01	1.0000	1668.0	8.34%	1658.4	8.44%
NAC2(NAC)/colamp-NAC2-DAP-Seq(GSE60143)/Homer	TDCTTGNNNNNCAAG	1e0	-4.391e-01	1.0000	741.0	3.71%	741.3	3.77%
HDG1(Homeobox)/col100-HDG1-DAP-Seq(GSE60143)/Homer	DDYAATTAATGH	1e0	-4.388e-01	1.0000	469.0	2.34%	471.4	2.40%
MYB41(MYB)/col-MYB41-DAP-Seq(GSE60143)/Homer	BYTYACCTAA	1e0	-4.374e-01	1.0000	481.0	2.40%	483.5	2.46%
At4g38000(C2C2dof)/col-At4g38000-DAP-Seq(GSE60143)/Homer	WWWTWACTTTTT	1e0	-4.342e-01	1.0000	1560.0	7.80%	1552.7	7.90%
IDD7(C2H2)/col-IDD7-DAP-Seq(GSE60143)/Homer	TTTGTCKTTTTN	1e0	-4.327e-01	1.0000	523.0	2.61%	525.5	2.67%
AS2(LOBAS2)/col-AS2-DAP-Seq(GSE60143)/Homer	CCGDAAWWHMCGSCG	1e0	-4.279e-01	1.0000	48.0	0.24%	50.1	0.25%
VND3(NAC)/colamp-VND3-DAP-Seq(GSE60143)/Homer	TRCTTGWDNHWCAAG	1e0	-4.227e-01	1.0000	751.0	3.75%	752.6	3.83%
GATA11(C2C2gata)/col-GATA11-DAP-Seq(GSE60143)/Homer	DDHYYAGATCTR	1e0	-4.177e-01	1.0000	494.0	2.47%	497.8	2.53%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-4.094e-01	1.0000	324.0	1.62%	328.4	1.67%
MYB107(MYB)/col-MYB107-DAP-Seq(GSE60143)/Homer	RGTWGGTRRR	1e0	-4.082e-01	1.0000	2125.0	10.62%	2113.3	10.75%
AT3G09735(S1Falike)/col-AT3G09735-DAP-Seq(GSE60143)/Homer	TTCTAGAANMTTCTA	1e0	-4.050e-01	1.0000	419.0	2.10%	424.0	2.16%
NTM2(NAC)/col-NTM2-DAP-Seq(GSE60143)/Homer	CTTRTNNNAYAAGBH	1e0	-4.034e-01	1.0000	648.0	3.24%	651.8	3.32%
MYB74(MYB)/colamp-MYB74-DAP-Seq(GSE60143)/Homer	YYYACCTACCWH	1e0	-4.011e-01	1.0000	673.0	3.36%	676.9	3.44%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-3.878e-01	1.0000	2238.0	11.19%	2227.2	11.33%
SeqBias: polyA-repeat	AAAAAAAAAA	1e0	-3.874e-01	1.0000	19433.0	97.17%	19109.6	97.24%
LBD2(LOBAS2)/colamp-LBD2-DAP-Seq(GSE60143)/Homer	TCCGAWTTTTTCGGN	1e0	-3.842e-01	1.0000	229.0	1.15%	234.2	1.19%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-3.699e-01	1.0000	3158.0	15.79%	3138.0	15.97%
SMB(NAC)/colamp-SMB-DAP-Seq(GSE60143)/Homer	CTTVNNNNDBAAGHW	1e0	-3.688e-01	1.0000	1032.0	5.16%	1036.0	5.27%
AT3G10113(MYBrelated)/col-AT3G10113-DAP-Seq(GSE60143)/Homer	WNAAATATCWWN	1e0	-3.666e-01	1.0000	486.0	2.43%	492.1	2.50%
ERF38(AP2EREBP)/col-ERF38-DAP-Seq(GSE60143)/Homer	CACCGACA	1e0	-3.637e-01	1.0000	258.0	1.29%	264.8	1.35%
Unknown1(NR/Ini-like)/Drosophila-Promoters/Homer	MYGGTCACACTG	1e0	-3.633e-01	1.0000	254.0	1.27%	260.8	1.33%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-3.626e-01	1.0000	805.0	4.03%	810.9	4.13%
AT2G01818(PLATZ)/col-AT2G01818-DAP-Seq(GSE60143)/Homer	TCTAGAABSTTC	1e0	-3.623e-01	1.0000	130.0	0.65%	135.1	0.69%
At1g19000(MYBrelated)/colamp-At1g19000-DAP-Seq(GSE60143)/Homer	WWTGGATAADDT	1e0	-3.618e-01	1.0000	1115.0	5.58%	1118.7	5.69%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-3.594e-01	1.0000	223.0	1.11%	229.7	1.17%
SeqBias: C/A-bias	MMMMMMMMMM	1e0	-3.574e-01	1.0000	19949.0	99.74%	19606.9	99.77%
AGL25(MADS)/colamp-AGL25-DAP-Seq(GSE60143)/Homer	TTTCCATWTWTGGAA	1e0	-3.453e-01	1.0000	60.0	0.30%	64.5	0.33%
ERF1(AP2EREBP)/colamp-ERF1-DAP-Seq(GSE60143)/Homer	GGCGGCTR	1e0	-3.328e-01	1.0000	616.0	3.08%	624.5	3.18%
AT3G42860(zfGRF)/col-AT3G42860-DAP-Seq(GSE60143)/Homer	CGTTGACTTN	1e0	-3.289e-01	1.0000	319.0	1.59%	327.4	1.67%
ATHB24(ZFHD)/colamp-ATHB24-DAP-Seq(GSE60143)/Homer	TAATTAAS	1e0	-3.256e-01	1.0000	1018.0	5.09%	1025.1	5.22%
MYB17(MYB)/colamp-MYB17-DAP-Seq(GSE60143)/Homer	GGTAGGTGRG	1e0	-3.178e-01	1.0000	689.0	3.45%	698.9	3.56%
WRKY47(WRKY)/colamp-WRKY47-DAP-Seq(GSE60143)/Homer	WAAGTCAACGBT	1e0	-3.095e-01	1.0000	308.0	1.54%	317.0	1.61%
ESE1(AP2EREBP)/col-ESE1-DAP-Seq(GSE60143)/Homer	GGCGGCGG	1e0	-3.046e-01	1.0000	733.0	3.67%	743.5	3.78%
AT4G00250(GeBP)/col-AT4G00250-DAP-Seq(GSE60143)/Homer	WDTGGATAAKRT	1e0	-3.045e-01	1.0000	736.0	3.68%	746.5	3.80%
At5g58900(MYBrelated)/colamp-At5g58900-DAP-Seq(GSE60143)/Homer	WWWTYTTATCTWWWW	1e0	-3.034e-01	1.0000	2626.0	13.13%	2623.0	13.35%
At1g19210(AP2EREBP)/colamp-At1g19210-DAP-Seq(GSE60143)/Homer	HCACCGACCAHN	1e0	-2.924e-01	1.0000	1079.0	5.39%	1089.0	5.54%
AT2G31460(REMB3)/col-AT2G31460-DAP-Seq(GSE60143)/Homer	WNWARWDGAAATGAT	1e0	-2.918e-01	1.0000	502.0	2.51%	513.5	2.61%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	-2.815e-01	1.0000	4.0	0.02%	5.4	0.03%
ANAC028(NAC)/col-ANAC028-DAP-Seq(GSE60143)/Homer	WRCTTGNNNNNCAAG	1e0	-2.811e-01	1.0000	792.0	3.96%	804.9	4.10%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-2.808e-01	1.0000	573.0	2.86%	585.7	2.98%
At3g11280(MYBrelated)/col-At3g11280-DAP-Seq(GSE60143)/Homer	GATAAGRT	1e0	-2.806e-01	1.0000	1919.0	9.59%	1925.6	9.80%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-2.746e-01	1.0000	305.0	1.52%	316.0	1.61%
RLR1?/SacCer-Promoters/Homer	WTTTTCYYTTTT	1e0	-2.703e-01	1.0000	828.0	4.14%	842.0	4.28%
SeqBias: GA-repeat	GAGAGAGAGA	1e0	-2.662e-01	1.0000	11649.0	58.25%	11516.5	58.60%
CEJ1(AP2EREBP)/col-CEJ1-DAP-Seq(GSE60143)/Homer	WWTGTCGGTG	1e0	-2.599e-01	1.0000	690.0	3.45%	704.0	3.58%
ANAC046(NAC)/colamp-ANAC046-DAP-Seq(GSE60143)/Homer	ACACGYWAYC	1e0	-2.538e-01	1.0000	2523.0	12.62%	2528.9	12.87%
At5g04390(C2H2)/col200-At5g04390-DAP-Seq(GSE60143)/Homer	AGTGANDN	1e0	-2.537e-01	1.0000	10278.0	51.39%	10173.7	51.77%
AT3G16280(AP2EREBP)/colamp-AT3G16280-DAP-Seq(GSE60143)/Homer	HCACCGACAHHDHHN	1e0	-2.530e-01	1.0000	166.0	0.83%	176.8	0.90%
AT1G47655(C2C2dof)/colamp-AT1G47655-DAP-Seq(GSE60143)/Homer	YHACTTTTTS	1e0	-2.509e-01	1.0000	5785.0	28.93%	5752.2	29.27%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-2.505e-01	1.0000	124.0	0.62%	133.1	0.68%
AT3G25990(Trihelix)/colamp-AT3G25990-DAP-Seq(GSE60143)/Homer	TTAACCATAG	1e0	-2.498e-01	1.0000	958.0	4.79%	973.3	4.95%
MYB88(MYB)/col-MYB88-DAP-Seq(GSE60143)/Homer	HNACGCTCCT	1e0	-2.341e-01	1.0000	2461.0	12.31%	2470.3	12.57%
CBF1(AP2EREBP)/colamp-CBF1-DAP-Seq(GSE60143)/Homer	YRCCGACATN	1e0	-2.338e-01	1.0000	423.0	2.11%	438.4	2.23%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-2.320e-01	1.0000	818.0	4.09%	835.1	4.25%
ABF1/SacCer-Promoters/Homer	CGTRNAAARTGA	1e0	-2.309e-01	1.0000	162.0	0.81%	173.8	0.88%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e0	-2.296e-01	1.0000	310.0	1.55%	324.2	1.65%
AT2G28920(ND)/col-AT2G28920-DAP-Seq(GSE60143)/Homer	WAGATATTTWTW	1e0	-2.228e-01	1.0000	280.0	1.40%	294.6	1.50%
ERF5(AP2EREBP)/colamp-ERF5-DAP-Seq(GSE60143)/Homer	DCMGCCGCCA	1e0	-2.222e-01	1.0000	428.0	2.14%	444.7	2.26%
EPR1(MYBrelated)/colamp-EPR1-DAP-Seq(GSE60143)/Homer	AAATATCT	1e0	-2.193e-01	1.0000	405.0	2.02%	421.6	2.15%
LHY1(MYBrelated)/col-LHY1-DAP-Seq(GSE60143)/Homer	AAATATCT	1e0	-2.193e-01	1.0000	405.0	2.02%	421.6	2.15%
At1g22810(AP2EREBP)/colamp-At1g22810-DAP-Seq(GSE60143)/Homer	BCACCGACANNN	1e0	-2.176e-01	1.0000	260.0	1.30%	274.3	1.40%
AT5G61620(MYBrelated)/colamp-AT5G61620-DAP-Seq(GSE60143)/Homer	CTTATCCA	1e0	-2.145e-01	1.0000	2278.0	11.39%	2292.4	11.66%
AT1G71450(AP2EREBP)/col-AT1G71450-DAP-Seq(GSE60143)/Homer	DHDWTGTCGGTG	1e0	-2.136e-01	1.0000	1306.0	6.53%	1325.7	6.75%
Rap210(AP2EREBP)/col-Rap210-DAP-Seq(GSE60143)/Homer	TGTCGGCA	1e0	-2.035e-01	1.0000	379.0	1.90%	396.5	2.02%
OBP1(C2C2dof)/col-OBP1-DAP-Seq(GSE60143)/Homer	NHHACTTTWT	1e0	-2.003e-01	1.0000	4491.0	22.45%	4487.9	22.84%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-1.987e-01	1.0000	114.0	0.57%	125.6	0.64%
AT1G72740(MYBrelated)/colamp-AT1G72740-DAP-Seq(GSE60143)/Homer	NNWWAMCCTAAHWNN	1e0	-1.933e-01	1.0000	1359.0	6.79%	1381.2	7.03%
ERF8(AP2EREBP)/colamp-ERF8-DAP-Seq(GSE60143)/Homer	CGCCGYCATW	1e0	-1.926e-01	1.0000	922.0	4.61%	944.5	4.81%
COG1(C2C2dof)/col-COG1-DAP-Seq(GSE60143)/Homer	DAAAAAGTGA	1e0	-1.922e-01	1.0000	2169.0	10.85%	2188.3	11.13%
RAP26(AP2EREBP)/colamp-RAP26-DAP-Seq(GSE60143)/Homer	HDATGGCGGCGG	1e0	-1.877e-01	1.0000	1110.0	5.55%	1133.5	5.77%
VND2(NAC)/col-VND2-DAP-Seq(GSE60143)/Homer	DNCKTNNNNNNNAAG	1e0	-1.869e-01	1.0000	1013.0	5.07%	1036.2	5.27%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-1.867e-01	1.0000	101.0	0.51%	112.9	0.57%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	-1.842e-01	1.0000	13.0	0.07%	17.1	0.09%
At5g08520(MYBrelated)/colamp-At5g08520-DAP-Seq(GSE60143)/Homer	ADBSTTATCY	1e0	-1.839e-01	1.0000	2110.0	10.55%	2131.2	10.84%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-1.814e-01	1.0000	1157.0	5.79%	1181.3	6.01%
JKD(C2H2)/col-JKD-DAP-Seq(GSE60143)/Homer	TTTTGTCGTTTT	1e0	-1.807e-01	1.0000	233.0	1.17%	249.5	1.27%
ANAC050(NAC)/colamp-ANAC050-DAP-Seq(GSE60143)/Homer	WNCTTGNNNNNCAAG	1e0	-1.786e-01	1.0000	600.0	3.00%	622.7	3.17%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e0	-1.766e-01	1.0000	864.0	4.32%	888.6	4.52%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-1.759e-01	1.0000	411.0	2.05%	431.2	2.19%
bHLH18(bHLH)/col-bHLH18-DAP-Seq(GSE60143)/Homer	CACGTGTTYCACGTG	1e0	-1.746e-01	1.0000	18.0	0.09%	23.2	0.12%
ATHB33(ZFHD)/col-ATHB33-DAP-Seq(GSE60143)/Homer	NGTRATTAAK	1e0	-1.716e-01	1.0000	1736.0	8.68%	1761.9	8.97%
HuR(?)/HEK293-HuR-CLIP-Seq(GSE87887)/Homer	BTTTGGTTTG	1e0	-1.695e-01	1.0000	5868.0	29.34%	5856.1	29.80%
dof24(C2C2dof)/col-dof24-DAP-Seq(GSE60143)/Homer	TWMCTTTTTG	1e0	-1.685e-01	1.0000	3214.0	16.07%	3231.8	16.44%
ANAC062(NAC)/colamp-ANAC062-DAP-Seq(GSE60143)/Homer	TACTTANTNWNYAAG	1e0	-1.681e-01	1.0000	492.0	2.46%	514.3	2.62%
At1g74840(MYBrelated)/col100-At1g74840-DAP-Seq(GSE60143)/Homer	YHTTATCCAWWT	1e0	-1.650e-01	1.0000	932.0	4.66%	958.3	4.88%
LIN-39(Homeobox)/cElegans.L3-LIN39-ChIP-Seq(modEncode)/Homer	ATGATTRATG	1e0	-1.631e-01	1.0000	1591.0	7.95%	1618.6	8.24%
AT3G58630(Trihelix)/col-AT3G58630-DAP-Seq(GSE60143)/Homer	TCTCCGGCGA	1e0	-1.620e-01	1.0000	115.0	0.57%	128.8	0.66%
ERF11(AP2EREBP)/col-ERF11-DAP-Seq(GSE60143)/Homer	RTGGCGGCGG	1e0	-1.587e-01	1.0000	770.0	3.85%	796.1	4.05%
E-box/Drosophila-Promoters/Homer	AACAGCTGTTHN	1e0	-1.585e-01	1.0000	368.0	1.84%	389.6	1.98%
MYB96(MYB)/colamp-MYB96-DAP-Seq(GSE60143)/Homer	WGGTRGTTGG	1e0	-1.579e-01	1.0000	1210.0	6.05%	1238.6	6.30%
TCP16(TCP)/colamp-TCP16-DAP-Seq(GSE60143)/Homer	GTGGDCCYNNNNNNN	1e0	-1.574e-01	1.0000	746.0	3.73%	772.0	3.93%
At5g29000(G2like)/col-At5g29000-DAP-Seq(GSE60143)/Homer	RGAATATTCYHH	1e0	-1.544e-01	1.0000	304.0	1.52%	324.0	1.65%
MYB57(MYB)/col-MYB57-DAP-Seq(GSE60143)/Homer	TTACCTAACT	1e0	-1.492e-01	1.0000	626.0	3.13%	652.2	3.32%
ANAC094(NAC)/col-ANAC094-DAP-Seq(GSE60143)/Homer	DVCGTRNNNNNYACG	1e0	-1.480e-01	1.0000	186.0	0.93%	203.2	1.03%
CUC2(NAC)/colamp-CUC2-DAP-Seq(GSE60143)/Homer	TRCKTGTNNNWCAMG	1e0	-1.448e-01	1.0000	306.0	1.53%	327.4	1.67%
At4g31060(AP2EREBP)/colamp-At4g31060-DAP-Seq(GSE60143)/Homer	CACCGACAAW	1e0	-1.444e-01	1.0000	235.0	1.18%	254.8	1.30%
Replumless(BLH)/Arabidopsis-RPL.GFP-ChIP-Seq(GSE78727)/Homer	HGTCWHATCA	1e0	-1.439e-01	1.0000	1532.0	7.66%	1563.9	7.96%
RAV1(RAV)/colamp-RAV1-DAP-Seq(GSE60143)/Homer	TWWTTTCTGTTG	1e0	-1.417e-01	1.0000	966.0	4.83%	996.1	5.07%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-1.416e-01	1.0000	1195.0	5.97%	1226.4	6.24%
At2g44940(AP2EREBP)/colamp-At2g44940-DAP-Seq(GSE60143)/Homer	NYACCGACAHNNNNN	1e0	-1.413e-01	1.0000	110.0	0.55%	124.6	0.63%
MYB30(MYB)/colamp-MYB30-DAP-Seq(GSE60143)/Homer	AGGTAGTTGG	1e0	-1.393e-01	1.0000	1540.0	7.70%	1572.8	8.00%
dof43(C2C2dof)/colamp-dof43-DAP-Seq(GSE60143)/Homer	NAAAAAGTDA	1e0	-1.377e-01	1.0000	2248.0	11.24%	2279.7	11.60%
ERF73(AP2EREBP)/col-ERF73-DAP-Seq(GSE60143)/Homer	CCGCCGCC	1e0	-1.377e-01	1.0000	656.0	3.28%	684.0	3.48%
CRF4(AP2EREBP)/colamp-CRF4-DAP-Seq(GSE60143)/Homer	CGCCGCCA	1e0	-1.337e-01	1.0000	540.0	2.70%	567.8	2.89%
At5g05790(MYBrelated)/col-At5g05790-DAP-Seq(GSE60143)/Homer	AYCTTATC	1e0	-1.329e-01	1.0000	1998.0	9.99%	2031.1	10.33%
REM16(ABI3VP1)/col-REM16-DAP-Seq(GSE60143)/Homer	DTTTTTSCCGSMAAA	1e0	-1.298e-01	1.0000	1.0	0.01%	2.3	0.01%
KAN2(G2like)/colamp-KAN2-DAP-Seq(GSE60143)/Homer	ATATTCTY	1e0	-1.289e-01	1.0000	2014.0	10.07%	2048.3	10.42%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-1.270e-01	1.0000	192.0	0.96%	211.7	1.08%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-1.258e-01	1.0000	242.0	1.21%	263.3	1.34%
DREB26(AP2EREBP)/col-DREB26-DAP-Seq(GSE60143)/Homer	CCACCGACAH	1e0	-1.250e-01	1.0000	165.0	0.83%	183.2	0.93%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e0	-1.246e-01	1.0000	652.0	3.26%	682.6	3.47%
HSFC1(HSF)/col-HSFC1-DAP-Seq(GSE60143)/Homer	HTTCTAGAADCTTCT	1e0	-1.234e-01	1.0000	162.0	0.81%	180.6	0.92%
ANAC096(NAC)/colamp-ANAC096-DAP-Seq(GSE60143)/Homer	TACTTGWNNNWCAAG	1e0	-1.229e-01	1.0000	709.0	3.55%	740.7	3.77%
dof42(C2C2dof)/col-dof42-DAP-Seq(GSE60143)/Homer	AAAAAGGC	1e0	-1.215e-01	1.0000	873.0	4.37%	906.3	4.61%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-1.212e-01	1.0000	64.0	0.32%	76.2	0.39%
BPC6(BBRBPC)/col-BPC6-DAP-Seq(GSE60143)/Homer	YTYTCTCTCTCTCTA	1e0	-1.212e-01	1.0000	64.0	0.32%	76.2	0.39%
DAG2(C2C2dof)/col-DAG2-DAP-Seq(GSE60143)/Homer	WWTTHACTTTTT	1e0	-1.201e-01	1.0000	2502.0	12.51%	2537.5	12.91%
At2g03500(G2like)/col-At2g03500-DAP-Seq(GSE60143)/Homer	WWAGAATATTCT	1e0	-1.140e-01	1.0000	263.0	1.31%	286.4	1.46%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e0	-1.122e-01	1.0000	2339.0	11.70%	2378.0	12.10%
AT1G69570(C2C2dof)/col-AT1G69570-DAP-Seq(GSE60143)/Homer	WAAAAGTGHH	1e0	-1.113e-01	1.0000	1736.0	8.68%	1775.8	9.04%
ANAC103(NAC)/col-ANAC103-DAP-Seq(GSE60143)/Homer	AACTTGNWNWNCAAG	1e0	-1.099e-01	1.0000	378.0	1.89%	405.0	2.06%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-1.094e-01	1.0000	199.0	1.00%	220.8	1.12%
TINY(AP2EREBP)/col-TINY-DAP-Seq(GSE60143)/Homer	NNCACCGACA	1e0	-1.089e-01	1.0000	138.0	0.69%	156.1	0.79%
JGL(C2H2)/col-JGL-DAP-Seq(GSE60143)/Homer	ACYTTCAGTT	1e0	-9.621e-02	1.0000	2496.0	12.48%	2539.1	12.92%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e0	-9.581e-02	1.0000	189.0	0.95%	211.5	1.08%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-9.531e-02	1.0000	79.0	0.40%	94.3	0.48%
AT3G12130(C3H)/colamp-AT3G12130-DAP-Seq(GSE60143)/Homer	TMACTTTTTV	1e0	-9.317e-02	1.0000	3906.0	19.53%	3943.6	20.07%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e0	-9.128e-02	1.0000	1731.0	8.65%	1776.3	9.04%
ATHB25(ZFHD)/colamp-ATHB25-DAP-Seq(GSE60143)/Homer	TAATTAVB	1e0	-8.972e-02	1.0000	1562.0	7.81%	1607.7	8.18%
At1g78700(BZR)/col-At1g78700-DAP-Seq(GSE60143)/Homer	NNNNCACGTGNNNNN	1e0	-8.703e-02	1.0000	332.0	1.66%	361.1	1.84%
PCF/Arabidopsis-Promoters/Homer	NNWWWTGGGCYTDDN	1e0	-8.557e-02	1.0000	272.0	1.36%	299.1	1.52%
LBD23(LOBAS2)/colamp-LBD23-DAP-Seq(GSE60143)/Homer	GCGNAWWWTNCGCYW	1e0	-8.353e-02	1.0000	1011.0	5.05%	1054.7	5.37%
ANAC087(NAC)/col-ANAC087-DAP-Seq(GSE60143)/Homer	WVCKTGHNNNWCAMG	1e0	-8.003e-02	1.0000	276.0	1.38%	304.6	1.55%
KANADI1(Myb)/Seedling-KAN1-ChIP-Seq(GSE48081)/Homer	ARGAATAWWN	1e0	-7.438e-02	1.0000	1365.0	6.83%	1414.7	7.20%
MS188(MYB)/colamp-MS188-DAP-Seq(GSE60143)/Homer	WARKTAGGTRRA	1e0	-7.267e-02	1.0000	855.0	4.28%	899.3	4.58%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-7.190e-02	1.0000	101.0	0.51%	120.1	0.61%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e0	-7.079e-02	1.0000	763.0	3.82%	806.5	4.10%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	-7.036e-02	1.0000	25.0	0.12%	35.4	0.18%
bHLH10(bHLH)/colamp-bHLH10-DAP-Seq(GSE60143)/Homer	YACCGACA	1e0	-6.870e-02	1.0000	149.0	0.74%	172.9	0.88%
HSF3(HSF)/colamp-HSF3-DAP-Seq(GSE60143)/Homer	NTTCTAGAAKCTTCT	1e0	-6.802e-02	1.0000	1040.0	5.20%	1088.7	5.54%
ANAC053(NAC)/colamp-ANAC053-DAP-Seq(GSE60143)/Homer	TDCTTGNNNNNCAAG	1e0	-6.738e-02	1.0000	577.0	2.89%	617.0	3.14%
MYB119(MYB)/colamp-MYB119-DAP-Seq(GSE60143)/Homer	YRACCGTTACDD	1e0	-6.678e-02	1.0000	343.0	1.71%	377.0	1.92%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-6.164e-02	1.0000	2545.0	12.72%	2603.1	13.25%
CBF4(AP2EREBP)/colamp-CBF4-DAP-Seq(GSE60143)/Homer	NRCCGACDWNNNNNN	1e0	-5.919e-02	1.0000	379.0	1.90%	415.1	2.11%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e0	-5.884e-02	1.0000	433.0	2.17%	471.9	2.40%
ERF13(AP2EREBP)/colamp-ERF13-DAP-Seq(GSE60143)/Homer	TYAGCCGCCATT	1e0	-5.814e-02	1.0000	1157.0	5.79%	1210.9	6.16%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-5.710e-02	1.0000	168.0	0.84%	194.7	0.99%
ANAC045(NAC)/col-ANAC045-DAP-Seq(GSE60143)/Homer	DNCKTVNNNNNNAMG	1e0	-5.619e-02	1.0000	2558.0	12.79%	2619.3	13.33%
MYB27(MYB)/colamp-MYB27-DAP-Seq(GSE60143)/Homer	TACCTAACWT	1e0	-5.253e-02	1.0000	157.0	0.78%	183.8	0.94%
RKD2(RWPRK)/colamp-RKD2-DAP-Seq(GSE60143)/Homer	GACKTTTCRDCTTCC	1e0	-5.208e-02	1.0000	870.0	4.35%	921.6	4.69%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-5.126e-02	1.0000	154.0	0.77%	180.1	0.92%
STOP1(C2H2)/colamp-STOP1-DAP-Seq(GSE60143)/Homer	DTATCTGGKGRAGGT	1e0	-4.439e-02	1.0000	548.0	2.74%	594.0	3.02%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e0	-4.349e-02	1.0000	1347.0	6.73%	1409.2	7.17%
GATA12(C2C2gata)/col-GATA12-DAP-Seq(GSE60143)/Homer	YAGATCTRAW	1e0	-4.330e-02	1.0000	636.0	3.18%	685.2	3.49%
ELT-3(Gata)/cElegans-L1-ELT3-ChIP-Seq(modEncode)/Homer	AWTGATAAGA	1e0	-4.254e-02	1.0000	923.0	4.61%	979.4	4.98%
AT1G10720(BSD)/col-AT1G10720-DAP-Seq(GSE60143)/Homer	TTCTAGAAKCTTCTA	1e0	-4.083e-02	1.0000	13.0	0.07%	22.5	0.11%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-3.978e-02	1.0000	589.0	2.94%	638.9	3.25%
GATA1(C2C2gata)/colamp-GATA1-DAP-Seq(GSE60143)/Homer	DDWWYYAGATCTRRW	1e0	-3.975e-02	1.0000	419.0	2.10%	462.5	2.35%
ATHB6(Homeobox)/col-ATHB6-DAP-Seq(GSE60143)/Homer	AATGATTG	1e0	-3.961e-02	1.0000	1608.0	8.04%	1675.4	8.53%
AT2G28810(C2C2dof)/colamp-AT2G28810-DAP-Seq(GSE60143)/Homer	VAAAAAGTWA	1e0	-3.880e-02	1.0000	3848.0	19.24%	3919.5	19.94%
AT3G60490(AP2EREBP)/colamp-AT3G60490-DAP-Seq(GSE60143)/Homer	NNRCCGACANNNNNN	1e0	-3.797e-02	1.0000	135.0	0.68%	162.5	0.83%
ANAC057(NAC)/colamp-ANAC057-DAP-Seq(GSE60143)/Homer	DVCKTGNNNNNCAMG	1e0	-3.639e-02	1.0000	789.0	3.94%	845.5	4.30%
CDF3(C2C2dof)/colamp-CDF3-DAP-Seq(GSE60143)/Homer	AAAAGTRM	1e0	-3.615e-02	1.0000	2720.0	13.60%	2795.1	14.22%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-3.586e-02	1.0000	53.0	0.27%	71.0	0.36%
WRKY65(WRKY)/colamp-WRKY65-DAP-Seq(GSE60143)/Homer	AWWWAGTCAACG	1e0	-3.566e-02	1.0000	630.0	3.15%	682.1	3.47%
ABR1(AP2EREBP)/colamp-ABR1-DAP-Seq(GSE60143)/Homer	AAATGGCGGCGG	1e0	-3.499e-02	1.0000	843.0	4.21%	901.3	4.59%
HSF7(HSF)/colamp-HSF7-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e0	-3.491e-02	1.0000	188.0	0.94%	220.3	1.12%
ERF3(AP2EREBP)/colamp-ERF3-DAP-Seq(GSE60143)/Homer	ATGGCGGCGG	1e0	-3.480e-02	1.0000	556.0	2.78%	607.0	3.09%
LBD13(LOBAS2)/colamp-LBD13-DAP-Seq(GSE60143)/Homer	KCCGTNWTTTBCGGC	1e0	-3.386e-02	1.0000	778.0	3.89%	835.4	4.25%
ERF7(AP2EREBP)/col-ERF7-DAP-Seq(GSE60143)/Homer	ATGRCGGCGG	1e0	-3.314e-02	1.0000	1262.0	6.31%	1329.1	6.76%
CUC1(NAC)/col-CUC1-DAP-Seq(GSE60143)/Homer	TACTTGTNNNACAAG	1e0	-3.251e-02	1.0000	450.0	2.25%	497.2	2.53%
SPL14(SBP)/col-SPL14-DAP-Seq(GSE60143)/Homer	NNWHTGTACGGAHNH	1e0	-3.166e-02	1.0000	84.0	0.42%	107.4	0.55%
ATHB13(Homeobox)/col-ATHB13-DAP-Seq(GSE60143)/Homer	CAATAATT	1e0	-2.734e-02	1.0000	1196.0	5.98%	1266.9	6.45%
SeqBias: CG-repeat	CGCGCGCGCG	1e0	-2.469e-02	1.0000	1747.0	8.73%	1828.0	9.30%
DDF2(AP2EREBP)/col-DDF2-DAP-Seq(GSE60143)/Homer	GATGTCGRCR	1e0	-2.365e-02	1.0000	14.0	0.07%	25.1	0.13%
Pho2(bHLH)/Yeast-Pho2-ChIP-Seq(GSE29506)/Homer	CCCACGTGCT	1e0	-2.325e-02	1.0000	462.0	2.31%	515.0	2.62%
AT4G18450(AP2EREBP)/col-AT4G18450-DAP-Seq(GSE60143)/Homer	ATGGCGGCKG	1e0	-2.264e-02	1.0000	373.0	1.86%	421.1	2.14%
AGL13(MADS)/col-AGL13-DAP-Seq(GSE60143)/Homer	TWCCAWWTWTGGWAA	1e0	-2.113e-02	1.0000	49.0	0.24%	69.9	0.36%
TF3A(C2H2)/col-TF3A-DAP-Seq(GSE60143)/Homer	NNDDGAGGAGGWNNN	1e0	-1.943e-02	1.0000	2310.0	11.55%	2401.6	12.22%
bHLH157(bHLH)/col-bHLH157-DAP-Seq(GSE60143)/Homer	KACACGTCTCTY	1e0	-1.899e-02	1.0000	207.0	1.03%	246.6	1.25%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e0	-1.768e-02	1.0000	1542.0	7.71%	1627.1	8.28%
VND4(NAC)/colamp-VND4-DAP-Seq(GSE60143)/Homer	WRCTTGWANWWCAAG	1e0	-1.762e-02	1.0000	748.0	3.74%	815.9	4.15%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	-1.736e-02	1.0000	17.0	0.08%	30.8	0.16%
At5g47390(MYBrelated)/col-At5g47390-DAP-Seq(GSE60143)/Homer	CTTATCCA	1e0	-1.733e-02	1.0000	1976.0	9.88%	2067.3	10.52%
DEAR2(AP2EREBP)/colamp-DEAR2-DAP-Seq(GSE60143)/Homer	HCACCGACAWHD	1e0	-1.699e-02	1.0000	731.0	3.65%	799.0	4.07%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-1.696e-02	1.0000	962.0	4.81%	1036.7	5.28%
Knotted(Homeobox)/Corn-KN1-ChIP-Seq(GSE39161)/Homer	GAYGNGACRGGN	1e0	-1.572e-02	1.0000	1945.0	9.72%	2038.3	10.37%
CBF3(AP2EREBP)/colamp-CBF3-DAP-Seq(GSE60143)/Homer	YNRCCGACATNN	1e0	-1.553e-02	1.0000	274.0	1.37%	320.4	1.63%
WRKY42(WRKY)/colamp-WRKY42-DAP-Seq(GSE60143)/Homer	NAAAGTCAACGN	1e0	-1.499e-02	1.0000	490.0	2.45%	549.2	2.79%
AT5G05550(Trihelix)/col-AT5G05550-DAP-Seq(GSE60143)/Homer	HDNHDTCKCCGGMGA	1e0	-1.355e-02	1.0000	1559.0	7.80%	1650.7	8.40%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-1.352e-02	1.0000	256.0	1.28%	302.4	1.54%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e0	-1.351e-02	1.0000	1389.0	6.94%	1477.1	7.52%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-1.326e-02	1.0000	2457.0	12.29%	2559.5	13.02%
RRTF1(AP2EREBP)/colamp-RRTF1-DAP-Seq(GSE60143)/Homer	CCGCCGCHATTT	1e0	-1.231e-02	1.0000	158.0	0.79%	196.3	1.00%
GATA14(C2C2gata)/col-GATA14-DAP-Seq(GSE60143)/Homer	AYCAGATCTG	1e0	-1.226e-02	1.0000	759.0	3.79%	832.0	4.23%
PQM-1(?)/cElegans-L3-ChIP-Seq(modEncode)/Homer	ACTGATAAGA	1e0	-1.210e-02	1.0000	902.0	4.51%	980.1	4.99%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-1.191e-02	1.0000	1832.0	9.16%	1931.0	9.83%
AT5G66940(C2C2dof)/col-AT5G66940-DAP-Seq(GSE60143)/Homer	NNHACTTTWT	1e0	-1.150e-02	1.0000	3007.0	15.04%	3116.4	15.86%
ERF4(AP2EREBP)/colamp-ERF4-DAP-Seq(GSE60143)/Homer	WDWTGGCGGCGG	1e0	-1.143e-02	1.0000	936.0	4.68%	1016.4	5.17%
At4g28140(AP2EREBP)/colamp-At4g28140-DAP-Seq(GSE60143)/Homer	DCCACCGACCAW	1e0	-1.104e-02	1.0000	179.0	0.90%	220.9	1.12%
AT1G04880(ARID)/colamp-AT1G04880-DAP-Seq(GSE60143)/Homer	AAACTATATADTATA	1e0	-1.019e-02	1.0000	62.0	0.31%	88.5	0.45%
ATHB34(ZFHD)/colamp-ATHB34-DAP-Seq(GSE60143)/Homer	TRATTARS	1e0	-9.989e-03	1.0000	1063.0	5.32%	1149.3	5.85%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-9.488e-03	1.0000	763.0	3.82%	840.2	4.28%
ATHB15(HB)/col-ATHB15-DAP-Seq(GSE60143)/Homer	GYAATSATTA	1e0	-8.860e-03	1.0000	350.0	1.75%	407.9	2.08%
STZ(C2H2)/colamp-STZ-DAP-Seq(GSE60143)/Homer	HNBTCACT	1e0	-8.795e-03	1.0000	10411.0	52.05%	10463.4	53.24%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-8.593e-03	1.0000	375.0	1.88%	434.3	2.21%
ATHB23(ZFHD)/col-ATHB23-DAP-Seq(GSE60143)/Homer	HTAATTARNN	1e0	-8.509e-03	1.0000	1180.0	5.90%	1272.6	6.48%
At1g72010(TCP)/colamp-At1g72010-DAP-Seq(GSE60143)/Homer	GGDCCCAC	1e0	-8.262e-03	1.0000	666.0	3.33%	741.7	3.77%
ATHB5(HB)/colamp-ATHB5-DAP-Seq(GSE60143)/Homer	AATGATTG	1e0	-7.095e-03	1.0000	1103.0	5.51%	1196.8	6.09%
RAP211(AP2EREBP)/colamp-RAP211-DAP-Seq(GSE60143)/Homer	RGCCGGCYWW	1e0	-6.868e-03	1.0000	2900.0	14.50%	3022.6	15.38%
SeqBias: G/A bias	RRRRRRRRRR	1e0	-6.734e-03	1.0000	19972.0	99.86%	19639.4	99.93%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-6.723e-03	1.0000	57.0	0.29%	84.4	0.43%
ANAC004(NAC)/colamp-ANAC004-DAP-Seq(GSE60143)/Homer	WNCTTVYNNNRBAAG	1e0	-6.431e-03	1.0000	435.0	2.17%	501.5	2.55%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-5.546e-03	1.0000	267.0	1.33%	322.4	1.64%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-5.486e-03	1.0000	1002.0	5.01%	1096.6	5.58%
ANAC047(NAC)/colamp-ANAC047-DAP-Seq(GSE60143)/Homer	WACACGTAACTT	1e0	-5.485e-03	1.0000	615.0	3.08%	693.9	3.53%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-4.641e-03	1.0000	201.0	1.00%	251.4	1.28%
DREB2(AP2EREBP)/col-DREB2-DAP-Seq(GSE60143)/Homer	TMACCGACATWA	1e0	-4.491e-03	1.0000	303.0	1.52%	363.6	1.85%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-4.318e-03	1.0000	139.0	0.69%	182.1	0.93%
AtIDD11(C2H2)/colamp-AtIDD11-DAP-Seq(GSE60143)/Homer	TTTGTCGTTT	1e0	-4.242e-03	1.0000	489.0	2.44%	563.4	2.87%
ANAC042(NAC)/col-ANAC042-DAP-Seq(GSE60143)/Homer	CGTNDHNDHNACGKY	1e0	-3.999e-03	1.0000	364.0	1.82%	430.8	2.19%
TATA-box/Drosophila-Promoters/Homer	CTATAAAAGCSV	1e0	-3.953e-03	1.0000	51.0	0.26%	79.9	0.41%
ANAC038(NAC)/col-ANAC038-DAP-Seq(GSE60143)/Homer	ACACGTWAYC	1e0	-3.929e-03	1.0000	2813.0	14.06%	2948.1	15.00%
At1g76110(ARID)/colamp-At1g76110-DAP-Seq(GSE60143)/Homer	ATTTAATG	1e0	-3.785e-03	1.0000	622.0	3.11%	705.0	3.59%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-3.753e-03	1.0000	1675.0	8.38%	1794.3	9.13%
GTL1(Trihelix)/colamp-GTL1-DAP-Seq(GSE60143)/Homer	WWTTTACCKY	1e0	-3.664e-03	1.0000	1486.0	7.43%	1601.6	8.15%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e0	-3.396e-03	1.0000	34.0	0.17%	58.8	0.30%
HSF6(HSF)/col-HSF6-DAP-Seq(GSE60143)/Homer	TTYTAGAAGCTTCTA	1e0	-3.055e-03	1.0000	256.0	1.28%	315.0	1.60%
At5g08330(TCP)/col-At5g08330-DAP-Seq(GSE60143)/Homer	GGRCCCAC	1e0	-2.943e-03	1.0000	843.0	4.21%	940.1	4.78%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-2.899e-03	1.0000	272.0	1.36%	333.1	1.69%
AT2G38300(G2like)/col-AT2G38300-DAP-Seq(GSE60143)/Homer	ADRGAATGTT	1e0	-2.847e-03	1.0000	2173.0	10.87%	2307.4	11.74%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-2.835e-03	1.0000	250.0	1.25%	309.1	1.57%
AT1G28160(AP2EREBP)/colamp-AT1G28160-DAP-Seq(GSE60143)/Homer	GGCGGCGG	1e0	-2.449e-03	1.0000	1902.0	9.51%	2034.0	10.35%
At4g36780(BZR)/col-At4g36780-DAP-Seq(GSE60143)/Homer	NNNNNNCACGTGNNN	1e0	-2.345e-03	1.0000	328.0	1.64%	396.8	2.02%
At3g60580(C2H2)/col-At3g60580-DAP-Seq(GSE60143)/Homer	WTTYTACT	1e0	-2.270e-03	1.0000	9292.0	46.46%	9409.9	47.88%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-2.254e-03	1.0000	653.0	3.26%	744.1	3.79%
AGL63(MADS)/col-AGL63-DAP-Seq(GSE60143)/Homer	TTCCAAWWWTGG	1e0	-2.241e-03	1.0000	1065.0	5.33%	1175.6	5.98%
WRKY40(WRKY)/colamp-WRKY40-DAP-Seq(GSE60143)/Homer	AHWAGTCAAC	1e0	-2.100e-03	1.0000	789.0	3.94%	888.6	4.52%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e0	-2.087e-03	1.0000	1526.0	7.63%	1652.4	8.41%
AZF1(C2H2)/colamp-AZF1-DAP-Seq(GSE60143)/Homer	DKSWCACT	1e0	-2.050e-03	1.0000	9367.0	46.84%	9486.5	48.27%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e0	-1.963e-03	1.0000	812.0	4.06%	913.8	4.65%
bZIP69(bZIP)/col-bZIP69-DAP-Seq(GSE60143)/Homer	GACAGCTGKCAW	1e0	-1.747e-03	1.0000	192.0	0.96%	248.5	1.26%
RAP212(AP2EREBP)/col-RAP212-DAP-Seq(GSE60143)/Homer	CGCCGCCATTTT	1e0	-1.688e-03	1.0000	596.0	2.98%	687.7	3.50%
PHV(HB)/col-PHV-DAP-Seq(GSE60143)/Homer	RTAATSATTA	1e0	-1.653e-03	1.0000	421.0	2.10%	500.5	2.55%
PUCHI(AP2EREBP)/colamp-PUCHI-DAP-Seq(GSE60143)/Homer	GCGCCGTY	1e0	-1.623e-03	1.0000	589.0	2.94%	680.6	3.46%
AT3G52440(C2C2dof)/colamp-AT3G52440-DAP-Seq(GSE60143)/Homer	DTHACTTTTT	1e0	-1.470e-03	1.0000	3650.0	18.25%	3815.4	19.41%
GT2(Trihelix)/colamp-GT2-DAP-Seq(GSE60143)/Homer	AMGGTAAAWWWN	1e0	-1.409e-03	1.0000	1343.0	6.71%	1470.3	7.48%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-1.354e-03	1.0000	1238.0	6.19%	1362.5	6.93%
ESE3(AP2EREBP)/col-ESE3-DAP-Seq(GSE60143)/Homer	GACGGTGG	1e0	-1.239e-03	1.0000	1149.0	5.75%	1271.6	6.47%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-1.224e-03	1.0000	912.0	4.56%	1024.3	5.21%
SHN3(AP2EREBP)/col-SHN3-DAP-Seq(GSE60143)/Homer	CCGCCGCC	1e0	-1.174e-03	1.0000	298.0	1.49%	369.5	1.88%
DPL-1(E2F)/cElegans-Adult-ChIP-Seq(modEncode)/Homer	TAGCGCGC	1e0	-1.146e-03	1.0000	740.0	3.70%	844.6	4.30%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-1.109e-03	1.0000	487.0	2.44%	575.3	2.93%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-1.099e-03	1.0000	83.0	0.41%	124.9	0.64%
bZIP42(bZIP)/colamp-bZIP42-DAP-Seq(GSE60143)/Homer	GCCACGTCAGCA	1e0	-1.044e-03	1.0000	3.0	0.01%	14.2	0.07%
MYB44(MYB)/colamp-MYB44-DAP-Seq(GSE60143)/Homer	CVGTTWWKTCNGTTA	1e0	-9.910e-04	1.0000	95.0	0.47%	139.7	0.71%
AT1G76880(Trihelix)/col-AT1G76880-DAP-Seq(GSE60143)/Homer	ACGGTAAAAW	1e0	-9.560e-04	1.0000	419.0	2.10%	503.5	2.56%
ANAC013(NAC)/col-ANAC013-DAP-Seq(GSE60143)/Homer	CTTGNNNNNCAAGNA	1e0	-9.470e-04	1.0000	442.0	2.21%	528.4	2.69%
BAM8(BES1)/col-BAM8-DAP-Seq(GSE60143)/Homer	NNWSACACGTGTSWN	1e0	-9.200e-04	1.0000	149.0	0.74%	203.0	1.03%
Adof1(C2C2dof)/col-Adof1-DAP-Seq(GSE60143)/Homer	NRWAAAGYDV	1e0	-8.700e-04	1.0000	4341.0	21.70%	4522.5	23.01%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-8.490e-04	1.0000	2968.0	14.84%	3139.5	15.97%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-8.010e-04	1.0000	551.0	2.76%	647.8	3.30%
TCP7(TCP)/col-TCP7-DAP-Seq(GSE60143)/Homer	GTGGGSCCCACHHNN	1e0	-7.370e-04	1.0000	687.0	3.44%	793.0	4.04%
AT3G57600(AP2EREBP)/col-AT3G57600-DAP-Seq(GSE60143)/Homer	GGCGGTGG	1e0	-7.030e-04	1.0000	814.0	4.07%	928.9	4.73%
MYB98(MYB)/col-MYB98-DAP-Seq(GSE60143)/Homer	NWDCCGTTAC	1e0	-6.950e-04	1.0000	355.0	1.77%	436.6	2.22%
OBP3(C2C2dof)/col-OBP3-DAP-Seq(GSE60143)/Homer	NYWACTTTTT	1e0	-5.620e-04	1.0000	4999.0	25.00%	5192.7	26.42%
HAT2(Homeobox)/colamp-HAT2-DAP-Seq(GSE60143)/Homer	CYAATSATTR	1e0	-5.270e-04	1.0000	1123.0	5.62%	1257.0	6.40%
OBP4(C2C2dof)/col-OBP4-DAP-Seq(GSE60143)/Homer	WTTHACTTTTTB	1e0	-4.760e-04	1.0000	2074.0	10.37%	2240.6	11.40%
FRS9(ND)/col-FRS9-DAP-Seq(GSE60143)/Homer	RGAGAGAGAAAG	1e0	-4.520e-04	1.0000	433.0	2.17%	525.2	2.67%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-3.460e-04	1.0000	294.0	1.47%	374.8	1.91%
MGP(C2H2)/colamp-MGP-DAP-Seq(GSE60143)/Homer	TTTTGTCGTTTW	1e0	-3.430e-04	1.0000	285.0	1.43%	364.6	1.86%
WRKY11(WRKY)/col-WRKY11-DAP-Seq(GSE60143)/Homer	SCGTTGACTTTN	1e0	-3.210e-04	1.0000	127.0	0.64%	183.7	0.93%
M1BP(Zf)/S2R+-M1BP-ChIP-Seq(GSE49842)/Homer	CAGTGTGACCGT	1e0	-3.170e-04	1.0000	264.0	1.32%	341.4	1.74%
DDF1(AP2EREBP)/col-DDF1-DAP-Seq(GSE60143)/Homer	GCCGACAT	1e0	-2.720e-04	1.0000	212.0	1.06%	283.5	1.44%
LOB(LOBAS2)/col-LOB-DAP-Seq(GSE60143)/Homer	CGCCGKAWWTTHCGS	1e0	-2.350e-04	1.0000	129.0	0.65%	187.9	0.96%
TCP20(TCP)/col-TCP20-DAP-Seq(GSE60143)/Homer	GGDCCCAC	1e0	-1.920e-04	1.0000	527.0	2.63%	635.9	3.24%
ATHB18(Homeobox)/colamp-ATHB18-DAP-Seq(GSE60143)/Homer	YCAATSATTG	1e0	-1.870e-04	1.0000	172.0	0.86%	240.0	1.22%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e0	-1.860e-04	1.0000	2347.0	11.73%	2536.1	12.90%
GATA4(C2C2gata)/col-GATA4-DAP-Seq(GSE60143)/Homer	DDWTYAGATCTR	1e0	-1.820e-04	1.0000	744.0	3.72%	869.1	4.42%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-1.560e-04	1.0000	312.0	1.56%	400.7	2.04%
ATHB6(Homeobox)/Arabidopsis-HB6-ChIP-Seq(GSE80564)/Homer	CAATNATTBN	1e0	-1.520e-04	1.0000	934.0	4.67%	1073.7	5.46%
RBFox2(?)/Heart-RBFox2-CLIP-Seq(GSE57926)/Homer	TGCATGCA	1e0	-1.470e-04	1.0000	2916.0	14.58%	3121.9	15.88%
MYB3(MYB)/Arabidopsis-MYB3-ChIP-Seq(GSE80564)/Homer	GKTAGGTRGG	1e0	-1.390e-04	1.0000	2344.0	11.72%	2538.8	12.92%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-1.350e-04	1.0000	320.0	1.60%	410.9	2.09%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e0	-1.290e-04	1.0000	839.0	4.20%	974.2	4.96%
GAGA-repeat/Arabidopsis-Promoters/Homer	CTCTCTCTCY	1e0	-1.200e-04	1.0000	1872.0	9.36%	2055.1	10.46%
HAT1(Homeobox)/col-HAT1-DAP-Seq(GSE60143)/Homer	SCAATCATTGNN	1e0	-1.200e-04	1.0000	169.0	0.84%	238.3	1.21%
MYB118(MYB)/colamp-MYB118-DAP-Seq(GSE60143)/Homer	TAWCCGTTAC	1e0	-1.080e-04	1.0000	315.0	1.57%	406.9	2.07%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-9.600e-05	1.0000	197.0	0.98%	272.7	1.39%
WRKY26(WRKY)/colamp-WRKY26-DAP-Seq(GSE60143)/Homer	CGTTGACTWDKN	1e0	-8.400e-05	1.0000	677.0	3.38%	805.8	4.10%
WRKY14(WRKY)/colamp-WRKY14-DAP-Seq(GSE60143)/Homer	NCGTTGACTTTN	1e0	-8.200e-05	1.0000	648.0	3.24%	774.4	3.94%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	-6.600e-05	1.0000	28.0	0.14%	62.1	0.32%
ZML2(C2C2gata)/col-ZML2-DAP-Seq(GSE60143)/Homer	CATCATCATC	1e0	-6.400e-05	1.0000	219.0	1.09%	300.5	1.53%
At5g66730(C2H2)/colamp-At5g66730-DAP-Seq(GSE60143)/Homer	TTTGTCKTTTTK	1e0	-5.900e-05	1.0000	345.0	1.73%	444.6	2.26%
TATA-box/SacCer-Promoters/Homer	BBHWTATATA	1e0	-5.700e-05	1.0000	449.0	2.25%	560.3	2.85%
AT5G47660(Trihelix)/colamp-AT5G47660-DAP-Seq(GSE60143)/Homer	AWTTTTACCG	1e0	-5.200e-05	1.0000	1944.0	9.72%	2142.8	10.90%
AT5G63260(C3H)/col-AT5G63260-DAP-Seq(GSE60143)/Homer	RAAAAAGTRA	1e0	-5.000e-05	1.0000	3747.0	18.73%	3985.4	20.28%
CBF2(AP2EREBP)/colamp-CBF2-DAP-Seq(GSE60143)/Homer	YBRCCGACATNNNNN	1e0	-4.800e-05	1.0000	240.0	1.20%	326.1	1.66%
ATHB7(Homeobox)/col-ATHB7-DAP-Seq(GSE60143)/Homer	AATGATTG	1e0	-4.300e-05	1.0000	885.0	4.42%	1035.4	5.27%
PABPC1(?)/MEL-PABC1-CLIP-Seq(GSE69755)/Homer	HAATAAAGNN	1e0	-3.800e-05	1.0000	2305.0	11.53%	2519.6	12.82%
WRKY50(WRKY)/col-WRKY50-DAP-Seq(GSE60143)/Homer	NNTTGACTWNNGNNN	1e0	-3.600e-05	1.0000	1373.0	6.87%	1553.9	7.91%
WRKY29(WRKY)/colamp-WRKY29-DAP-Seq(GSE60143)/Homer	MGTTGACTTT	1e0	-3.200e-05	1.0000	1405.0	7.03%	1588.6	8.08%
PIF7(bHLH)/col-PIF7-DAP-Seq(GSE60143)/Homer	CCACGTGGNH	1e0	-2.900e-05	1.0000	239.0	1.20%	328.9	1.67%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-2.600e-05	1.0000	2340.0	11.70%	2561.6	13.03%
WRKY27(WRKY)/colamp-WRKY27-DAP-Seq(GSE60143)/Homer	NHGTTGACYTWD	1e0	-2.500e-05	1.0000	1215.0	6.08%	1391.4	7.08%
NAP(NAC)/col-NAP-DAP-Seq(GSE60143)/Homer	ARGTTACGTRTN	1e0	-2.000e-05	1.0000	792.0	3.96%	943.7	4.80%
Trl(Zf)/S2-GAGAfactor-ChIP-Seq(GSE40646)/Homer	RGAGAGAG	1e0	-1.300e-05	1.0000	4475.0	22.38%	4747.7	24.16%
ASHR1(ND)/col-ASHR1-DAP-Seq(GSE60143)/Homer	NTGGTGAN	1e0	-9.000e-06	1.0000	1923.0	9.62%	2145.1	10.91%
SUT1?/SacCer-Promoters/Homer	CCCCGCGC	1e0	-6.000e-06	1.0000	10335.0	51.68%	10584.3	53.86%
EMB1789(C3H)/col-EMB1789-DAP-Seq(GSE60143)/Homer	TWTTTACCGYND	1e0	-6.000e-06	1.0000	433.0	2.17%	559.7	2.85%
At5g08750(C3H)/col-At5g08750-DAP-Seq(GSE60143)/Homer	NWDTTGCGGCTR	1e0	-6.000e-06	1.0000	393.0	1.97%	514.3	2.62%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-6.000e-06	1.0000	1609.0	8.04%	1823.4	9.28%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e0	-5.000e-06	1.0000	3616.0	18.08%	3894.6	19.82%
CRC(C2C2YABBY)/col-CRC-DAP-Seq(GSE60143)/Homer	TWATSATA	1e0	-5.000e-06	1.0000	1641.0	8.21%	1860.1	9.46%
At1g36060(AP2EREBP)/colamp-At1g36060-DAP-Seq(GSE60143)/Homer	NNWWKGTCGGTG	1e0	-4.000e-06	1.0000	427.0	2.14%	555.7	2.83%
ATHB20(Homeobox)/colamp-ATHB20-DAP-Seq(GSE60143)/Homer	CAATHATT	1e0	-4.000e-06	1.0000	427.0	2.14%	556.0	2.83%
WRKY18(WRKY)/col-WRKY18-DAP-Seq(GSE60143)/Homer	NNNTTGACYWNNNNN	1e0	-2.000e-06	1.0000	2259.0	11.29%	2516.1	12.80%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-2.000e-06	1.0000	808.0	4.04%	983.4	5.00%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-2.000e-06	1.0000	346.0	1.73%	469.7	2.39%
O2(bZIP)/Corn-O2-ChIP-Seq(GSE63991)/Homer	GCTGACGTGGCA	1e0	-1.000e-06	1.0000	130.0	0.65%	212.3	1.08%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e0	-1.000e-06	1.0000	1409.0	7.04%	1632.8	8.31%
GAGA-repeat/SacCer-Promoters/Homer	CTYTCTYTCTCTCTC	1e0	-1.000e-06	1.0000	6942.0	34.71%	7273.8	37.01%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-1.000e-06	1.0000	192.0	0.96%	291.3	1.48%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-0.000e+00	1.0000	51.0	0.26%	110.5	0.56%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-0.000e+00	1.0000	428.0	2.14%	573.0	2.92%
BPC1(BBRBPC)/colamp-BPC1-DAP-Seq(GSE60143)/Homer	GARGAGAGAGAA	1e0	-0.000e+00	1.0000	994.0	4.97%	1200.4	6.11%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e0	-0.000e+00	1.0000	804.0	4.02%	995.4	5.06%
WRKY3(WRKY)/col-WRKY3-DAP-Seq(GSE60143)/Homer	NCKTTGACYDDN	1e0	-0.000e+00	1.0000	815.0	4.08%	1010.0	5.14%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e0	-0.000e+00	1.0000	895.0	4.47%	1097.7	5.59%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-0.000e+00	1.0000	895.0	4.47%	1097.2	5.58%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e0	-0.000e+00	1.0000	738.0	3.69%	926.0	4.71%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-0.000e+00	1.0000	454.0	2.27%	608.7	3.10%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-0.000e+00	1.0000	95.0	0.47%	175.5	0.89%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e0	-0.000e+00	1.0000	284.0	1.42%	411.7	2.09%
WRKY20(WRKY)/col-WRKY20-DAP-Seq(GSE60143)/Homer	CKTTGACYWD	1e0	-0.000e+00	1.0000	987.0	4.93%	1202.4	6.12%
ERF9(AP2EREBP)/colamp-ERF9-DAP-Seq(GSE60143)/Homer	AWATGGCGGCGG	1e0	-0.000e+00	1.0000	174.0	0.87%	278.7	1.42%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-0.000e+00	1.0000	1132.0	5.66%	1365.4	6.95%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-0.000e+00	1.0000	718.0	3.59%	914.3	4.65%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e0	-0.000e+00	1.0000	342.0	1.71%	487.5	2.48%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-0.000e+00	1.0000	94.0	0.47%	179.8	0.91%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-0.000e+00	1.0000	121.0	0.60%	216.3	1.10%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-0.000e+00	1.0000	859.0	4.29%	1078.9	5.49%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-0.000e+00	1.0000	358.0	1.79%	511.9	2.60%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-0.000e+00	1.0000	2904.0	14.52%	3252.1	16.55%
IBL1(bHLH)/Seedling-IBL1-ChIP-Seq(GSE51120)/Homer	CACGTGCC	1e0	-0.000e+00	1.0000	2280.0	11.40%	2603.8	13.25%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e0	-0.000e+00	1.0000	1402.0	7.01%	1675.4	8.53%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-0.000e+00	1.0000	165.0	0.83%	278.4	1.42%
DREB19(AP2EREBP)/colamp-DREB19-DAP-Seq(GSE60143)/Homer	AATGTCGGTK	1e0	-0.000e+00	1.0000	354.0	1.77%	511.4	2.60%
WRKY55(WRKY)/col-WRKY55-DAP-Seq(GSE60143)/Homer	NCGTTGACTT	1e0	-0.000e+00	1.0000	1574.0	7.87%	1865.2	9.49%
bZIP44(bZIP)/colamp-bZIP44-DAP-Seq(GSE60143)/Homer	NDTGCCACGTCAGCH	1e0	-0.000e+00	1.0000	14.0	0.07%	60.4	0.31%
GBF3(bZIP)/Arabidopsis-GBF3-ChIP-Seq(GSE80564)/Homer	TGCCACGTSAYC	1e0	-0.000e+00	1.0000	495.0	2.48%	679.6	3.46%
At5g65130(AP2EREBP)/colamp-At5g65130-DAP-Seq(GSE60143)/Homer	CCRCCGACAWTN	1e0	-0.000e+00	1.0000	133.0	0.66%	240.3	1.22%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-0.000e+00	1.0000	2062.0	10.31%	2389.5	12.16%
WRKY28(WRKY)/col-WRKY28-DAP-Seq(GSE60143)/Homer	BGTTGACTWH	1e0	-0.000e+00	1.0000	1812.0	9.06%	2126.7	10.82%
WRKY15(WRKY)/col-WRKY15-DAP-Seq(GSE60143)/Homer	VGTTGACTWW	1e0	-0.000e+00	1.0000	1326.0	6.63%	1611.6	8.20%
NLP7(RWPRK)/col-NLP7-DAP-Seq(GSE60143)/Homer	TGRCCYTTCR	1e0	-0.000e+00	1.0000	2920.0	14.60%	3302.1	16.80%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-0.000e+00	1.0000	538.0	2.69%	738.4	3.76%
bHLH74(bHLH)/col-bHLH74-DAP-Seq(GSE60143)/Homer	DRATCACGTGAB	1e0	-0.000e+00	1.0000	269.0	1.34%	419.1	2.13%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-0.000e+00	1.0000	186.0	0.93%	315.2	1.60%
WRKY43(WRKY)/colamp-WRKY43-DAP-Seq(GSE60143)/Homer	NCGTTGACTTTT	1e0	-0.000e+00	1.0000	436.0	2.18%	620.5	3.16%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-0.000e+00	1.0000	126.0	0.63%	236.8	1.20%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-0.000e+00	1.0000	1845.0	9.22%	2175.5	11.07%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e0	-0.000e+00	1.0000	1511.0	7.56%	1819.3	9.26%
WRKY75(WRKY)/col-WRKY75-DAP-Seq(GSE60143)/Homer	CGTTGACTWW	1e0	-0.000e+00	1.0000	1260.0	6.30%	1553.2	7.90%
WRKY31(WRKY)/colamp-WRKY31-DAP-Seq(GSE60143)/Homer	NCGTTGACTWWK	1e0	-0.000e+00	1.0000	944.0	4.72%	1204.7	6.13%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e0	-0.000e+00	1.0000	1189.0	5.95%	1477.7	7.52%
NAM(NAC)/col-NAM-DAP-Seq(GSE60143)/Homer	RGTTRCGTRW	1e0	-0.000e+00	1.0000	1003.0	5.01%	1271.8	6.47%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e0	-0.000e+00	1.0000	3053.0	15.27%	3474.2	17.68%
Dorsal(RHD)/Embryo-dl-ChIP-Seq(GSE65441)/Homer	GGGAAAAMCCCG	1e0	-0.000e+00	1.0000	268.0	1.34%	425.0	2.16%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-0.000e+00	1.0000	3363.0	16.81%	4004.7	20.38%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e0	-0.000e+00	1.0000	1345.0	6.73%	2060.1	10.48%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e0	-0.000e+00	1.0000	1939.0	9.70%	2768.5	14.09%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-0.000e+00	1.0000	952.0	4.76%	1641.9	8.35%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-0.000e+00	1.0000	661.0	3.31%	894.6	4.55%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e0	-0.000e+00	1.0000	2474.0	12.37%	4159.5	21.16%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-0.000e+00	1.0000	1749.0	8.74%	2146.5	10.92%
PHA-4(Forkhead)/cElegans-Embryos-PHA4-ChIP-Seq(modEncode)/Homer	KTGTTTGC	1e0	-0.000e+00	1.0000	5072.0	25.36%	5833.8	29.68%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-0.000e+00	1.0000	1794.0	8.97%	2596.1	13.21%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-0.000e+00	1.0000	1050.0	5.25%	1362.0	6.93%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e0	-0.000e+00	1.0000	1929.0	9.64%	2588.9	13.17%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e0	-0.000e+00	1.0000	3177.0	15.88%	4333.9	22.05%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e0	-0.000e+00	1.0000	6728.0	33.64%	7349.7	37.40%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-0.000e+00	1.0000	438.0	2.19%	1043.1	5.31%
WRKY6(WRKY)/colamp-WRKY6-DAP-Seq(GSE60143)/Homer	NCGTTGACTWWD	1e0	-0.000e+00	1.0000	1123.0	5.62%	1467.0	7.46%
WRKY24(WRKY)/colamp-WRKY24-DAP-Seq(GSE60143)/Homer	CGTTGACTWW	1e0	-0.000e+00	1.0000	1141.0	5.71%	1445.0	7.35%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e0	-0.000e+00	1.0000	1756.0	8.78%	3399.3	17.30%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	-0.000e+00	1.0000	2224.0	11.12%	2699.8	13.74%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e0	-0.000e+00	1.0000	2342.0	11.71%	3159.0	16.07%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e0	-0.000e+00	1.0000	1551.0	7.75%	2386.8	12.14%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-0.000e+00	1.0000	443.0	2.21%	1357.8	6.91%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-0.000e+00	1.0000	2665.0	13.33%	3206.5	16.32%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e0	-0.000e+00	1.0000	2870.0	14.35%	4722.7	24.03%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e0	-0.000e+00	1.0000	799.0	4.00%	1257.3	6.40%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e0	-0.000e+00	1.0000	1949.0	9.74%	2600.0	13.23%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-0.000e+00	1.0000	1186.0	5.93%	1873.4	9.53%
SPCH(bHLH)/Seedling-SPCH-ChIP-Seq(GSE57497)/Homer	WNBCACGTGA	1e0	-0.000e+00	1.0000	1381.0	6.91%	2123.6	10.81%
WRKY33(WRKY)/col-WRKY33-DAP-Seq(GSE60143)/Homer	CGTTGACYAW	1e0	-0.000e+00	1.0000	1038.0	5.19%	1327.7	6.76%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e0	-0.000e+00	1.0000	1865.0	9.32%	2549.7	12.97%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e0	-0.000e+00	1.0000	1455.0	7.27%	2090.1	10.63%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-0.000e+00	1.0000	2383.0	11.92%	3117.9	15.86%
GBF5(bZIP)/colamp-GBF5-DAP-Seq(GSE60143)/Homer	WKNWSACGTGGCAWN	1e0	-0.000e+00	1.0000	320.0	1.60%	513.1	2.61%
ABI5(bZIP)/col-ABI5-DAP-Seq(GSE60143)/Homer	GCCACGTG	1e0	-0.000e+00	1.0000	351.0	1.75%	620.8	3.16%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-0.000e+00	1.0000	458.0	2.29%	1205.3	6.13%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e0	-0.000e+00	1.0000	1296.0	6.48%	2234.1	11.37%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-0.000e+00	1.0000	454.0	2.27%	1036.4	5.27%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-0.000e+00	1.0000	1022.0	5.11%	2402.2	12.22%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-0.000e+00	1.0000	385.0	1.93%	1287.9	6.55%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-0.000e+00	1.0000	291.0	1.46%	1208.9	6.15%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e0	-0.000e+00	1.0000	596.0	2.98%	1243.7	6.33%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e0	-0.000e+00	1.0000	2073.0	10.37%	3788.0	19.27%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e0	-0.000e+00	1.0000	1627.0	8.13%	2375.6	12.09%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-0.000e+00	1.0000	89.0	0.45%	386.0	1.96%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e0	-0.000e+00	1.0000	1365.0	6.83%	1771.5	9.01%
ABF1(bZIP)/Arabidopsis-ABF1-ChIP-Seq(GSE80564)/Homer	CACGTGGC	1e0	-0.000e+00	1.0000	1086.0	5.43%	1420.9	7.23%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e0	-0.000e+00	1.0000	749.0	3.74%	2253.1	11.46%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-0.000e+00	1.0000	65.0	0.33%	423.0	2.15%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e0	-0.000e+00	1.0000	3503.0	17.52%	4815.4	24.50%
Cbf1(bHLH)/Yeast-Cbf1-ChIP-Seq(GSE29506)/Homer	TCACGTGAYH	1e0	-0.000e+00	1.0000	321.0	1.60%	780.3	3.97%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e0	-0.000e+00	1.0000	2025.0	10.12%	2416.7	12.30%
AREB3(bZIP)/col-AREB3-DAP-Seq(GSE60143)/Homer	NKGMCACGTGDCMNN	1e0	-0.000e+00	1.0000	257.0	1.29%	522.3	2.66%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e0	-0.000e+00	1.0000	780.0	3.90%	2407.6	12.25%
ATAF1(NAC)/col-ATAF1-DAP-Seq(GSE60143)/Homer	YACGTMAY	1e0	-0.000e+00	1.0000	2544.0	12.72%	3044.3	15.49%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e0	-0.000e+00	1.0000	31.0	0.15%	819.4	4.17%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-0.000e+00	1.0000	330.0	1.65%	519.3	2.64%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e0	-0.000e+00	1.0000	938.0	4.69%	1534.8	7.81%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e0	-0.000e+00	1.0000	1471.0	7.36%	1909.7	9.72%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e0	-0.000e+00	1.0000	690.0	3.45%	1180.1	6.00%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-0.000e+00	1.0000	1102.0	5.51%	1416.8	7.21%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e0	-0.000e+00	1.0000	656.0	3.28%	1556.7	7.92%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e0	-0.000e+00	1.0000	412.0	2.06%	637.2	3.24%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-0.000e+00	1.0000	3911.0	19.55%	4574.9	23.28%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e0	-0.000e+00	1.0000	1157.0	5.79%	2587.9	13.17%
bZIP3(bZIP)/col-bZIP3-DAP-Seq(GSE60143)/Homer	DWKNHSACGTGGCAD	1e0	-0.000e+00	1.0000	606.0	3.03%	882.2	4.49%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e0	-0.000e+00	1.0000	2574.0	12.87%	3660.0	18.62%
FEA4(bZIP)/Corn-FEA4-ChIP-Seq(GSE61954)/Homer	TGACGTCACS	1e0	-0.000e+00	1.0000	1408.0	7.04%	2239.0	11.39%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-0.000e+00	1.0000	65.0	0.33%	958.9	4.88%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-0.000e+00	1.0000	65.0	0.33%	958.9	4.88%
TGA2(bZIP)/colamp-TGA2-DAP-Seq(GSE60143)/Homer	ACGTCAYCHH	1e0	-0.000e+00	1.0000	524.0	2.62%	880.1	4.48%
HY5(bZIP)/colamp-HY5-DAP-Seq(GSE60143)/Homer	RRTSACGTSD	1e0	-0.000e+00	1.0000	669.0	3.35%	1261.3	6.42%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-0.000e+00	1.0000	1524.0	7.62%	2233.8	11.37%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e0	-0.000e+00	1.0000	2136.0	10.68%	3781.7	19.24%
BIM3(bHLH)/col-BIM3-DAP-Seq(GSE60143)/Homer	TWVTCACGTGAB	1e0	-0.000e+00	1.0000	141.0	0.70%	384.5	1.96%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-0.000e+00	1.0000	2338.0	11.69%	2803.1	14.26%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e0	-0.000e+00	1.0000	1920.0	9.60%	3521.8	17.92%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e0	-0.000e+00	1.0000	418.0	2.09%	1590.6	8.09%
bZIP68(bZIP)/col-bZIP68-DAP-Seq(GSE60143)/Homer	WGCCACGTGK	1e0	-0.000e+00	1.0000	296.0	1.48%	568.1	2.89%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e0	-0.000e+00	1.0000	1913.0	9.56%	3071.1	15.63%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-0.000e+00	1.0000	870.0	4.35%	1774.6	9.03%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-0.000e+00	1.0000	6714.0	33.57%	7298.0	37.13%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-0.000e+00	1.0000	303.0	1.52%	474.1	2.41%
TGA9(bZIP)/colamp-TGA9-DAP-Seq(GSE60143)/Homer	VTGACGTC	1e0	-0.000e+00	1.0000	1340.0	6.70%	1881.6	9.57%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e0	-0.000e+00	1.0000	1494.0	7.47%	2145.4	10.92%
PIF5ox(bHLH)/Arabidopsis-PIF5ox-ChIP-Seq(GSE35062)/Homer	BCACGTGVDN	1e0	-0.000e+00	1.0000	1537.0	7.69%	2059.6	10.48%
TGA1(bZIP)/colamp-TGA1-DAP-Seq(GSE60143)/Homer	TGACGTCAKC	1e0	-0.000e+00	1.0000	378.0	1.89%	885.4	4.51%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-0.000e+00	1.0000	1472.0	7.36%	1823.7	9.28%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-0.000e+00	1.0000	3169.0	15.85%	3701.2	18.83%
bZIP28(bZIP)/col-bZIP28-DAP-Seq(GSE60143)/Homer	TGCCACGTSABH	1e0	-0.000e+00	1.0000	214.0	1.07%	448.1	2.28%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-0.000e+00	1.0000	208.0	1.04%	727.0	3.70%
TGA4(bZIP)/colamp-TGA4-DAP-Seq(GSE60143)/Homer	RTGACGTCAKCW	1e0	-0.000e+00	1.0000	229.0	1.15%	708.3	3.60%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e0	-0.000e+00	1.0000	646.0	3.23%	1380.4	7.02%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-0.000e+00	1.0000	2186.0	10.93%	2710.1	13.79%
dHNF4(NR)/Fly-HNF4-ChIP-Seq(GSE73675)/Homer	GGTCCAAAGTCCAMT	1e0	-0.000e+00	1.0000	91.0	0.46%	421.1	2.14%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e0	-0.000e+00	1.0000	1474.0	7.37%	3028.3	15.41%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-0.000e+00	1.0000	829.0	4.15%	2119.3	10.78%
bZIP50(bZIP)/colamp-bZIP50-DAP-Seq(GSE60143)/Homer	GATGACGTCA	1e0	-0.000e+00	1.0000	963.0	4.81%	1735.9	8.83%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e0	-0.000e+00	1.0000	691.0	3.45%	1962.4	9.99%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e0	-0.000e+00	1.0000	2396.0	11.98%	4068.3	20.70%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e0	-0.000e+00	1.0000	552.0	2.76%	1212.2	6.17%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e0	-0.000e+00	1.0000	1548.0	7.74%	2213.2	11.26%
bZIP48(bZIP)/colamp-bZIP48-DAP-Seq(GSE60143)/Homer	DDWWKVTSACGTGGC	1e0	-0.000e+00	1.0000	329.0	1.65%	545.1	2.77%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e0	-0.000e+00	1.0000	8.0	0.04%	380.3	1.94%
bZIP16(bZIP)/colamp-bZIP16-DAP-Seq(GSE60143)/Homer	TGCCACGTGD	1e0	-0.000e+00	1.0000	222.0	1.11%	453.3	2.31%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-0.000e+00	1.0000	177.0	0.89%	476.9	2.43%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e0	-0.000e+00	1.0000	2303.0	11.52%	3987.2	20.29%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-0.000e+00	1.0000	1658.0	8.29%	2083.5	10.60%
WRKY25(WRKY)/colamp-WRKY25-DAP-Seq(GSE60143)/Homer	NNNNHRGTCAAMNNN	1e0	-0.000e+00	1.0000	1491.0	7.46%	1836.6	9.34%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-0.000e+00	1.0000	726.0	3.63%	1253.0	6.38%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-0.000e+00	1.0000	450.0	2.25%	1042.1	5.30%
BIM2(bHLH)/col-BIM2-DAP-Seq(GSE60143)/Homer	NNNNCACGTGNN	1e0	-0.000e+00	1.0000	1222.0	6.11%	1649.0	8.39%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	-0.000e+00	1.0000	186.0	0.93%	859.9	4.38%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e0	-0.000e+00	1.0000	1811.0	9.05%	2207.5	11.23%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-0.000e+00	1.0000	85.0	0.43%	475.0	2.42%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e0	-0.000e+00	1.0000	770.0	3.85%	1146.6	5.83%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-0.000e+00	1.0000	231.0	1.16%	405.2	2.06%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e0	-0.000e+00	1.0000	2198.0	10.99%	3776.7	19.22%
GT3a(Trihelix)/col-GT3a-DAP-Seq(GSE60143)/Homer	WNACACGTGTYWWAW	1e0	-0.000e+00	1.0000	191.0	0.95%	335.4	1.71%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-0.000e+00	1.0000	11.0	0.06%	425.7	2.17%
PIF4(bHLH)/Seedling-PIF4-ChIP-Seq(GSE35315)/Homer	NNBCACGTGN	1e0	-0.000e+00	1.0000	1802.0	9.01%	2298.0	11.69%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-0.000e+00	1.0000	448.0	2.24%	851.7	4.33%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)	NNAYTTCCTGHN	1e0	-0.000e+00	1.0000	2052.0	10.26%	3490.8	17.76%
TGA6(bZIP)/colamp-TGA6-DAP-Seq(GSE60143)/Homer	TGACGTCABC	1e0	-0.000e+00	1.0000	504.0	2.52%	1167.0	5.94%
E-box/Arabidopsis-Promoters/Homer	GCCACGTG	1e0	-0.000e+00	1.0000	454.0	2.27%	807.6	4.11%
WRKY71(WRKY)/col-WRKY71-DAP-Seq(GSE60143)/Homer	CKTTGACYWW	1e0	-0.000e+00	1.0000	1014.0	5.07%	1342.6	6.83%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e0	-0.000e+00	1.0000	2115.0	10.57%	3991.5	20.31%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	-0.000e+00	1.0000	263.0	1.31%	1051.8	5.35%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e0	-0.000e+00	1.0000	1183.0	5.92%	2201.4	11.20%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-0.000e+00	1.0000	750.0	3.75%	1023.2	5.21%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-0.000e+00	1.0000	169.0	0.84%	339.7	1.73%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e0	-0.000e+00	1.0000	796.0	3.98%	1999.8	10.18%
TGA3(bZIP)/colamp-TGA3-DAP-Seq(GSE60143)/Homer	WTGATGACGTCATCW	1e0	-0.000e+00	1.0000	42.0	0.21%	280.0	1.42%
bZIP53(bZIP)/colamp-bZIP53-DAP-Seq(GSE60143)/Homer	NDNHSACGTGKMNNN	1e0	-0.000e+00	1.0000	251.0	1.26%	479.1	2.44%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e0	-0.000e+00	1.0000	167.0	0.83%	466.9	2.38%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e0	-0.000e+00	1.0000	452.0	2.26%	780.6	3.97%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	-0.000e+00	1.0000	243.0	1.21%	1013.3	5.16%
ABF2(bZIP)/col-ABF2-DAP-Seq(GSE60143)/Homer	KGMCACGTGDCMHHH	1e0	-0.000e+00	1.0000	181.0	0.91%	400.8	2.04%
GBF6(bZIP)/colamp-GBF6-DAP-Seq(GSE60143)/Homer	WWTGMCACGTCABCW	1e0	-0.000e+00	1.0000	173.0	0.86%	408.5	2.08%
TGA10(bZIP)/colamp-TGA10-DAP-Seq(GSE60143)/Homer	ATGACGTC	1e0	-0.000e+00	1.0000	535.0	2.67%	1025.1	5.22%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-0.000e+00	1.0000	154.0	0.77%	447.6	2.28%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e0	-0.000e+00	1.0000	1887.0	9.44%	2314.5	11.78%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-0.000e+00	1.0000	80.0	0.40%	361.5	1.84%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e0	-0.000e+00	1.0000	86.0	0.43%	419.6	2.14%
TGA5(bZIP)/col-TGA5-DAP-Seq(GSE60143)/Homer	NNGATGACGTCATCN	1e0	-0.000e+00	1.0000	77.0	0.39%	374.6	1.91%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	-0.000e+00	1.0000	2.0	0.01%	257.9	1.31%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-0.000e+00	1.0000	267.0	1.33%	435.0	2.21%
AARE(HLH)/mES-cMyc-ChIP-Seq/Homer	GATTGCATCA	1e0	-0.000e+00	1.0000	116.0	0.58%	715.6	3.64%
bHLH34(bHLH)/colamp-bHLH34-DAP-Seq(GSE60143)/Homer	HGWGRHWGACACGTG	1e0	-0.000e+00	1.0000	304.0	1.52%	496.5	2.53%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-0.000e+00	1.0000	49.0	0.24%	233.0	1.19%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-0.000e+00	1.0000	27.0	0.14%	410.7	2.09%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-0.000e+00	1.0000	60.0	0.30%	426.8	2.17%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	-0.000e+00	1.0000	298.0	1.49%	475.9	2.42%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-0.000e+00	1.0000	100.0	0.50%	242.7	1.24%
BIM1(bHLH)/colamp-BIM1-DAP-Seq(GSE60143)/Homer	NNNNNNVTCACGTGM	1e0	-0.000e+00	1.0000	105.0	0.53%	264.2	1.34%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-0.000e+00	1.0000	15.0	0.07%	277.2	1.41%
 Ik-1	NHTTGGGAATRCC	1e0	0.000e+00	1.0000	20000.0	100.00%	19652.9	100.00%
AT4G12670(MYBrelated)/col-AT4G12670-DAP-Seq(GSE60143)/Homer	AGGGTTTAGGGTTTA	1e0	0.000e+00	1.0000	0.0	0.00%	6.4	0.03%