Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 20000)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 45804)	% of Background Sequences with Motif
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-316	-7.286e+02	0.0000	2914.0	14.57%	2450.5	5.35%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-300	-6.912e+02	0.0000	2852.0	14.26%	2444.4	5.34%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-264	-6.093e+02	0.0000	4517.0	22.59%	5373.2	11.74%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e-258	-5.943e+02	0.0000	4496.0	22.48%	5389.8	11.77%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e-255	-5.888e+02	0.0000	4212.0	21.06%	4914.8	10.74%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-252	-5.807e+02	0.0000	3615.0	18.07%	3931.5	8.59%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e-250	-5.771e+02	0.0000	2418.0	12.09%	2074.8	4.53%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-242	-5.584e+02	0.0000	4730.0	23.65%	5937.1	12.97%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-240	-5.541e+02	0.0000	3119.0	15.60%	3204.7	7.00%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-239	-5.513e+02	0.0000	1831.0	9.16%	1315.8	2.87%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-235	-5.423e+02	0.0000	4675.0	23.38%	5900.3	12.89%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-231	-5.328e+02	0.0000	4835.0	24.18%	6227.5	13.60%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-225	-5.194e+02	0.0000	2368.0	11.84%	2138.3	4.67%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-224	-5.166e+02	0.0000	2258.0	11.29%	1983.1	4.33%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-203	-4.686e+02	0.0000	4349.0	21.75%	5604.4	12.24%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-202	-4.664e+02	0.0000	3546.0	17.73%	4195.5	9.17%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-189	-4.369e+02	0.0000	1208.0	6.04%	730.4	1.60%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-189	-4.353e+02	0.0000	1195.0	5.97%	717.6	1.57%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-187	-4.325e+02	0.0000	4809.0	24.04%	6607.9	14.44%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e-180	-4.151e+02	0.0000	675.0	3.38%	200.6	0.44%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e-180	-4.151e+02	0.0000	675.0	3.38%	200.6	0.44%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e-178	-4.117e+02	0.0000	541.0	2.71%	99.5	0.22%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-166	-3.824e+02	0.0000	1020.0	5.10%	593.9	1.30%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e-165	-3.816e+02	0.0000	512.0	2.56%	99.6	0.22%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e-156	-3.615e+02	0.0000	544.0	2.72%	138.4	0.30%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-152	-3.518e+02	0.0000	3866.0	19.33%	5227.1	11.42%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e-141	-3.261e+02	0.0000	322.0	1.61%	17.3	0.04%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e-136	-3.133e+02	0.0000	838.0	4.19%	487.1	1.06%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)	NNAYTTCCTGHN	1e-123	-2.838e+02	0.0000	3464.0	17.32%	4809.2	10.51%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e-119	-2.747e+02	0.0000	853.0	4.26%	569.0	1.24%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e-118	-2.736e+02	0.0000	559.0	2.79%	237.2	0.52%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e-118	-2.735e+02	0.0000	381.0	1.91%	81.5	0.18%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-115	-2.660e+02	0.0000	1380.0	6.90%	1320.4	2.88%
dHNF4(NR)/Fly-HNF4-ChIP-Seq(GSE73675)/Homer	GGTCCAAAGTCCAMT	1e-113	-2.615e+02	0.0000	592.0	2.96%	286.8	0.63%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-107	-2.477e+02	0.0000	2284.0	11.42%	2856.2	6.24%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-107	-2.474e+02	0.0000	965.0	4.83%	769.6	1.68%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-99	-2.281e+02	0.0000	2028.0	10.14%	2495.8	5.45%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-93	-2.152e+02	0.0000	4879.0	24.39%	7956.3	17.38%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-91	-2.112e+02	0.0000	988.0	4.94%	886.7	1.94%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e-91	-2.102e+02	0.0000	268.0	1.34%	45.5	0.10%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e-85	-1.977e+02	0.0000	1595.0	7.98%	1881.7	4.11%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e-85	-1.976e+02	0.0000	1225.0	6.12%	1282.0	2.80%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e-81	-1.888e+02	0.0000	376.0	1.88%	155.0	0.34%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-81	-1.875e+02	0.0000	1082.0	5.41%	1091.0	2.38%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-81	-1.875e+02	0.0000	2080.0	10.40%	2762.1	6.03%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-81	-1.866e+02	0.0000	3043.0	15.21%	4542.8	9.92%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-79	-1.835e+02	0.0000	3572.0	17.86%	5580.6	12.19%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-78	-1.801e+02	0.0000	2826.0	14.13%	4170.1	9.11%
TGA6(bZIP)/colamp-TGA6-DAP-Seq(GSE60143)/Homer	TGACGTCABC	1e-76	-1.768e+02	0.0000	1474.0	7.37%	1759.4	3.84%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-75	-1.731e+02	0.0000	1144.0	5.72%	1233.0	2.69%
bZIP50(bZIP)/colamp-bZIP50-DAP-Seq(GSE60143)/Homer	GATGACGTCA	1e-74	-1.719e+02	0.0000	2174.0	10.87%	3007.6	6.57%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e-73	-1.702e+02	0.0000	985.0	4.92%	994.7	2.17%
FEA4(bZIP)/Corn-FEA4-ChIP-Seq(GSE61954)/Homer	TGACGTCACS	1e-73	-1.693e+02	0.0000	2536.0	12.68%	3688.4	8.06%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e-73	-1.692e+02	0.0000	5102.0	25.51%	8761.1	19.14%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e-71	-1.654e+02	0.0000	1349.0	6.74%	1594.6	3.48%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-71	-1.640e+02	0.0000	3631.0	18.15%	5829.6	12.74%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e-71	-1.638e+02	0.0000	3006.0	15.03%	4612.3	10.08%
TGA1(bZIP)/colamp-TGA1-DAP-Seq(GSE60143)/Homer	TGACGTCAKC	1e-69	-1.608e+02	0.0000	1122.0	5.61%	1239.4	2.71%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-69	-1.598e+02	0.0000	2607.0	13.04%	3876.1	8.47%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e-65	-1.513e+02	0.0000	2598.0	12.99%	3911.7	8.55%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e-64	-1.478e+02	0.0000	2244.0	11.22%	3266.4	7.14%
TGA4(bZIP)/colamp-TGA4-DAP-Seq(GSE60143)/Homer	RTGACGTCAKCW	1e-61	-1.424e+02	0.0000	838.0	4.19%	852.2	1.86%
AARE(HLH)/mES-cMyc-ChIP-Seq/Homer	GATTGCATCA	1e-61	-1.408e+02	0.0000	516.0	2.58%	392.8	0.86%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e-60	-1.398e+02	0.0000	2136.0	10.68%	3111.7	6.80%
HY5(bZIP)/colamp-HY5-DAP-Seq(GSE60143)/Homer	RRTSACGTSD	1e-58	-1.353e+02	0.0000	1642.0	8.21%	2233.4	4.88%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-57	-1.327e+02	0.0000	1123.0	5.62%	1344.8	2.94%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-56	-1.295e+02	0.0000	2228.0	11.14%	3345.3	7.31%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-56	-1.294e+02	0.0000	2699.0	13.49%	4248.2	9.28%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-55	-1.277e+02	0.0000	469.0	2.34%	357.2	0.78%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e-52	-1.206e+02	0.0000	412.0	2.06%	297.5	0.65%
SPCH(bHLH)/Seedling-SPCH-ChIP-Seq(GSE57497)/Homer	WNBCACGTGA	1e-52	-1.204e+02	0.0000	2428.0	12.14%	3786.4	8.27%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e-51	-1.186e+02	0.0000	447.0	2.23%	347.5	0.76%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e-50	-1.167e+02	0.0000	549.0	2.74%	493.4	1.08%
TGA5(bZIP)/col-TGA5-DAP-Seq(GSE60143)/Homer	NNGATGACGTCATCN	1e-50	-1.167e+02	0.0000	429.0	2.15%	327.3	0.72%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e-50	-1.156e+02	0.0000	1287.0	6.44%	1699.7	3.71%
TGA3(bZIP)/colamp-TGA3-DAP-Seq(GSE60143)/Homer	WTGATGACGTCATCW	1e-49	-1.142e+02	0.0000	322.0	1.61%	197.0	0.43%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e-47	-1.094e+02	0.0000	553.0	2.77%	518.3	1.13%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-46	-1.072e+02	0.0000	1593.0	7.96%	2294.0	5.01%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e-45	-1.058e+02	0.0000	2295.0	11.47%	3631.7	7.93%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e-45	-1.046e+02	0.0000	841.0	4.21%	985.6	2.15%
Cbf1(bHLH)/Yeast-Cbf1-ChIP-Seq(GSE29506)/Homer	TCACGTGAYH	1e-44	-1.027e+02	0.0000	853.0	4.26%	1012.3	2.21%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-42	-9.841e+01	0.0000	1319.0	6.59%	1843.8	4.03%
TGA10(bZIP)/colamp-TGA10-DAP-Seq(GSE60143)/Homer	ATGACGTC	1e-40	-9.433e+01	0.0000	1267.0	6.33%	1771.7	3.87%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-38	-8.819e+01	0.0000	1401.0	7.00%	2051.1	4.48%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e-38	-8.753e+01	0.0000	3330.0	16.65%	5853.7	12.79%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e-36	-8.421e+01	0.0000	7621.0	38.10%	15087.9	32.96%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e-34	-7.916e+01	0.0000	2107.0	10.54%	3467.9	7.58%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e-34	-7.855e+01	0.0000	2018.0	10.09%	3297.7	7.20%
PHA-4(Forkhead)/cElegans-Embryos-PHA4-ChIP-Seq(modEncode)/Homer	KTGTTTGC	1e-31	-7.346e+01	0.0000	6230.0	31.15%	12183.9	26.62%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-31	-7.344e+01	0.0000	1731.0	8.65%	2777.4	6.07%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-31	-7.300e+01	0.0000	2029.0	10.14%	3364.5	7.35%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-31	-7.291e+01	0.0000	1461.0	7.31%	2262.0	4.94%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e-30	-7.112e+01	0.0000	1204.0	6.02%	1790.6	3.91%
BIM3(bHLH)/col-BIM3-DAP-Seq(GSE60143)/Homer	TWVTCACGTGAB	1e-30	-7.066e+01	0.0000	412.0	2.06%	418.2	0.91%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e-30	-6.999e+01	0.0000	410.0	2.05%	417.4	0.91%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-29	-6.835e+01	0.0000	2254.0	11.27%	3853.2	8.42%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e-29	-6.703e+01	0.0000	1601.0	8.00%	2574.7	5.62%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e-28	-6.560e+01	0.0000	2187.0	10.94%	3744.3	8.18%
BIM1(bHLH)/colamp-BIM1-DAP-Seq(GSE60143)/Homer	NNNNNNVTCACGTGM	1e-28	-6.556e+01	0.0000	317.0	1.58%	291.5	0.64%
BIM2(bHLH)/col-BIM2-DAP-Seq(GSE60143)/Homer	NNNNCACGTGNN	1e-27	-6.399e+01	0.0000	1839.0	9.20%	3065.3	6.70%
PIF5ox(bHLH)/Arabidopsis-PIF5ox-ChIP-Seq(GSE35062)/Homer	BCACGTGVDN	1e-26	-6.126e+01	0.0000	2227.0	11.13%	3866.2	8.45%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e-26	-6.078e+01	0.0000	555.0	2.77%	684.4	1.50%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e-26	-6.061e+01	0.0000	3844.0	19.22%	7227.6	15.79%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e-25	-5.983e+01	0.0000	384.0	1.92%	409.6	0.89%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-25	-5.966e+01	0.0000	2648.0	13.24%	4741.2	10.36%
TGA9(bZIP)/colamp-TGA9-DAP-Seq(GSE60143)/Homer	VTGACGTC	1e-25	-5.914e+01	0.0000	2137.0	10.69%	3705.1	8.09%
PIF4(bHLH)/Seedling-PIF4-ChIP-Seq(GSE35315)/Homer	NNBCACGTGN	1e-24	-5.725e+01	0.0000	2515.0	12.57%	4494.6	9.82%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e-24	-5.631e+01	0.0000	2090.0	10.45%	3638.6	7.95%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-24	-5.613e+01	0.0000	1266.0	6.33%	2010.6	4.39%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e-24	-5.572e+01	0.0000	711.0	3.55%	979.8	2.14%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e-24	-5.568e+01	0.0000	1114.0	5.57%	1723.3	3.76%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e-23	-5.424e+01	0.0000	1567.0	7.83%	2613.0	5.71%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e-22	-5.291e+01	0.0000	3474.0	17.37%	6547.0	14.30%
E-box/Arabidopsis-Promoters/Homer	GCCACGTG	1e-22	-5.249e+01	0.0000	1023.0	5.12%	1573.1	3.44%
ATAF1(NAC)/col-ATAF1-DAP-Seq(GSE60143)/Homer	YACGTMAY	1e-21	-4.849e+01	0.0000	3849.0	19.25%	7405.6	16.18%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e-20	-4.817e+01	0.0000	4541.0	22.71%	8898.0	19.44%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e-20	-4.708e+01	0.0000	707.0	3.54%	1020.9	2.23%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e-20	-4.621e+01	0.0000	1165.0	5.83%	1892.9	4.14%
TGA2(bZIP)/colamp-TGA2-DAP-Seq(GSE60143)/Homer	ACGTCAYCHH	1e-20	-4.606e+01	0.0000	1090.0	5.45%	1748.6	3.82%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e-19	-4.571e+01	0.0000	1706.0	8.53%	2969.5	6.49%
bHLH34(bHLH)/colamp-bHLH34-DAP-Seq(GSE60143)/Homer	HGWGRHWGACACGTG	1e-19	-4.459e+01	0.0000	622.0	3.11%	880.5	1.92%
AREB3(bZIP)/col-AREB3-DAP-Seq(GSE60143)/Homer	NKGMCACGTGDCMNN	1e-19	-4.458e+01	0.0000	607.0	3.03%	853.4	1.86%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e-18	-4.319e+01	0.0000	2039.0	10.20%	3675.0	8.03%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e-18	-4.266e+01	0.0000	1687.0	8.43%	2962.4	6.47%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e-17	-4.026e+01	0.0000	2452.0	12.26%	4566.2	9.98%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e-17	-3.991e+01	0.0000	233.0	1.17%	239.8	0.52%
WRKY71(WRKY)/col-WRKY71-DAP-Seq(GSE60143)/Homer	CKTTGACYWW	1e-17	-3.962e+01	0.0000	1436.0	7.18%	2487.9	5.43%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e-16	-3.843e+01	0.0000	523.0	2.61%	736.5	1.61%
bZIP3(bZIP)/col-bZIP3-DAP-Seq(GSE60143)/Homer	DWKNHSACGTGGCAD	1e-16	-3.798e+01	0.0000	957.0	4.78%	1555.4	3.40%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e-16	-3.704e+01	0.0000	3692.0	18.46%	7248.4	15.83%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e-15	-3.634e+01	0.0000	3903.0	19.52%	7715.6	16.86%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e-15	-3.538e+01	0.0000	668.0	3.34%	1022.6	2.23%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e-15	-3.524e+01	0.0000	2139.0	10.70%	3979.1	8.69%
WRKY28(WRKY)/col-WRKY28-DAP-Seq(GSE60143)/Homer	BGTTGACTWH	1e-15	-3.505e+01	0.0000	2257.0	11.29%	4228.9	9.24%
WRKY6(WRKY)/colamp-WRKY6-DAP-Seq(GSE60143)/Homer	NCGTTGACTWWD	1e-15	-3.464e+01	0.0000	1558.0	7.79%	2787.7	6.09%
WRKY15(WRKY)/col-WRKY15-DAP-Seq(GSE60143)/Homer	VGTTGACTWW	1e-14	-3.431e+01	0.0000	1741.0	8.71%	3166.6	6.92%
ERF9(AP2EREBP)/colamp-ERF9-DAP-Seq(GSE60143)/Homer	AWATGGCGGCGG	1e-14	-3.366e+01	0.0000	522.0	2.61%	762.7	1.67%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-14	-3.279e+01	0.0000	3484.0	17.42%	6873.7	15.02%
WRKY75(WRKY)/col-WRKY75-DAP-Seq(GSE60143)/Homer	CGTTGACTWW	1e-14	-3.267e+01	0.0000	1691.0	8.46%	3083.7	6.74%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e-14	-3.248e+01	0.0000	927.0	4.63%	1543.9	3.37%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-13	-3.139e+01	0.0000	1084.0	5.42%	1864.5	4.07%
WRKY31(WRKY)/colamp-WRKY31-DAP-Seq(GSE60143)/Homer	NCGTTGACTWWK	1e-13	-3.124e+01	0.0000	1292.0	6.46%	2284.6	4.99%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e-13	-3.103e+01	0.0000	1021.0	5.10%	1742.6	3.81%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e-13	-3.083e+01	0.0000	2428.0	12.14%	4650.0	10.16%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e-13	-3.052e+01	0.0000	2370.0	11.85%	4531.2	9.90%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e-13	-3.015e+01	0.0000	2032.0	10.16%	3825.4	8.36%
ABF1(bZIP)/Arabidopsis-ABF1-ChIP-Seq(GSE80564)/Homer	CACGTGGC	1e-12	-2.979e+01	0.0000	1645.0	8.22%	3024.6	6.61%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e-12	-2.975e+01	0.0000	245.0	1.23%	294.8	0.64%
WRKY33(WRKY)/col-WRKY33-DAP-Seq(GSE60143)/Homer	CGTTGACYAW	1e-12	-2.969e+01	0.0000	1394.0	6.97%	2509.6	5.48%
WRKY25(WRKY)/colamp-WRKY25-DAP-Seq(GSE60143)/Homer	NNNNHRGTCAAMNNN	1e-12	-2.879e+01	0.0000	1955.0	9.78%	3683.1	8.05%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e-12	-2.875e+01	0.0000	330.0	1.65%	444.9	0.97%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-12	-2.869e+01	0.0000	2012.0	10.06%	3804.3	8.31%
GBF6(bZIP)/colamp-GBF6-DAP-Seq(GSE60143)/Homer	WWTGMCACGTCABCW	1e-12	-2.846e+01	0.0000	419.0	2.10%	605.8	1.32%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e-12	-2.837e+01	0.0000	2887.0	14.44%	5667.9	12.38%
WRKY55(WRKY)/col-WRKY55-DAP-Seq(GSE60143)/Homer	NCGTTGACTT	1e-12	-2.835e+01	0.0000	2033.0	10.17%	3853.4	8.42%
ABF2(bZIP)/col-ABF2-DAP-Seq(GSE60143)/Homer	KGMCACGTGDCMHHH	1e-12	-2.834e+01	0.0000	423.0	2.11%	613.0	1.34%
bZIP68(bZIP)/col-bZIP68-DAP-Seq(GSE60143)/Homer	WGCCACGTGK	1e-12	-2.814e+01	0.0000	612.0	3.06%	968.7	2.12%
bZIP28(bZIP)/col-bZIP28-DAP-Seq(GSE60143)/Homer	TGCCACGTSABH	1e-12	-2.794e+01	0.0000	491.0	2.46%	741.4	1.62%
NAM(NAC)/col-NAM-DAP-Seq(GSE60143)/Homer	RGTTRCGTRW	1e-12	-2.771e+01	0.0000	1669.0	8.34%	3101.5	6.78%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-11	-2.740e+01	0.0000	1667.0	8.33%	3101.7	6.78%
WRKY43(WRKY)/colamp-WRKY43-DAP-Seq(GSE60143)/Homer	NCGTTGACTTTT	1e-11	-2.734e+01	0.0000	681.0	3.40%	1107.4	2.42%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e-11	-2.714e+01	0.0000	1281.0	6.40%	2308.9	5.04%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e-11	-2.594e+01	0.0000	302.0	1.51%	409.7	0.90%
NLP7(RWPRK)/col-NLP7-DAP-Seq(GSE60143)/Homer	TGRCCYTTCR	1e-11	-2.585e+01	0.0000	3350.0	16.75%	6712.4	14.66%
GT3a(Trihelix)/col-GT3a-DAP-Seq(GSE60143)/Homer	WNACACGTGTYWWAW	1e-11	-2.585e+01	0.0000	317.0	1.58%	436.5	0.95%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e-11	-2.559e+01	0.0000	1005.0	5.03%	1765.8	3.86%
WRKY50(WRKY)/col-WRKY50-DAP-Seq(GSE60143)/Homer	NNTTGACTWNNGNNN	1e-10	-2.498e+01	0.0000	1660.0	8.30%	3120.7	6.82%
WRKY24(WRKY)/colamp-WRKY24-DAP-Seq(GSE60143)/Homer	CGTTGACTWW	1e-10	-2.493e+01	0.0000	1496.0	7.48%	2779.8	6.07%
bHLH74(bHLH)/col-bHLH74-DAP-Seq(GSE60143)/Homer	DRATCACGTGAB	1e-10	-2.436e+01	0.0000	554.0	2.77%	886.1	1.94%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e-10	-2.434e+01	0.0000	384.0	1.92%	566.6	1.24%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e-10	-2.393e+01	0.0000	1355.0	6.78%	2500.4	5.46%
WRKY18(WRKY)/col-WRKY18-DAP-Seq(GSE60143)/Homer	NNNTTGACYWNNNNN	1e-10	-2.322e+01	0.0000	2688.0	13.44%	5334.0	11.65%
BAM8(BES1)/col-BAM8-DAP-Seq(GSE60143)/Homer	NNWSACACGTGTSWN	1e-10	-2.321e+01	0.0000	248.0	1.24%	328.7	0.72%
bZIP48(bZIP)/colamp-bZIP48-DAP-Seq(GSE60143)/Homer	DDWWKVTSACGTGGC	1e-10	-2.320e+01	0.0000	606.0	3.03%	996.3	2.18%
RBFox2(?)/Heart-RBFox2-CLIP-Seq(GSE57926)/Homer	TGCATGCA	1e-10	-2.318e+01	0.0000	3233.0	16.16%	6512.4	14.23%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e-9	-2.293e+01	0.0000	658.0	3.29%	1100.3	2.40%
WRKY20(WRKY)/col-WRKY20-DAP-Seq(GSE60143)/Homer	CKTTGACYWD	1e-9	-2.290e+01	0.0000	1287.0	6.44%	2373.3	5.18%
bZIP53(bZIP)/colamp-bZIP53-DAP-Seq(GSE60143)/Homer	NDNHSACGTGKMNNN	1e-9	-2.148e+01	0.0000	528.0	2.64%	859.5	1.88%
IBL1(bHLH)/Seedling-IBL1-ChIP-Seq(GSE51120)/Homer	CACGTGCC	1e-9	-2.136e+01	0.0000	3174.0	15.87%	6422.8	14.03%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e-9	-2.118e+01	0.0000	1190.0	5.95%	2195.0	4.80%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e-9	-2.092e+01	0.0000	1597.0	7.99%	3048.6	6.66%
bZIP16(bZIP)/colamp-bZIP16-DAP-Seq(GSE60143)/Homer	TGCCACGTGD	1e-9	-2.091e+01	0.0000	467.0	2.33%	746.6	1.63%
ANAC042(NAC)/col-ANAC042-DAP-Seq(GSE60143)/Homer	CGTNDHNDHNACGKY	1e-9	-2.081e+01	0.0000	890.0	4.45%	1585.1	3.46%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e-8	-2.003e+01	0.0000	614.0	3.07%	1040.7	2.27%
PHV(HB)/col-PHV-DAP-Seq(GSE60143)/Homer	RTAATSATTA	1e-8	-1.984e+01	0.0000	658.0	3.29%	1129.7	2.47%
GBF5(bZIP)/colamp-GBF5-DAP-Seq(GSE60143)/Homer	WKNWSACGTGGCAWN	1e-8	-1.973e+01	0.0000	546.0	2.73%	909.4	1.99%
AT5G05550(Trihelix)/col-AT5G05550-DAP-Seq(GSE60143)/Homer	HDNHDTCKCCGGMGA	1e-8	-1.950e+01	0.0000	2189.0	10.95%	4331.6	9.46%
WRKY14(WRKY)/colamp-WRKY14-DAP-Seq(GSE60143)/Homer	NCGTTGACTTTN	1e-8	-1.929e+01	0.0000	874.0	4.37%	1570.2	3.43%
bHLH18(bHLH)/col-bHLH18-DAP-Seq(GSE60143)/Homer	CACGTGTTYCACGTG	1e-8	-1.911e+01	0.0000	51.0	0.26%	33.0	0.07%
Dorsal(RHD)/Embryo-dl-ChIP-Seq(GSE65441)/Homer	GGGAAAAMCCCG	1e-8	-1.897e+01	0.0000	409.0	2.04%	650.6	1.42%
GATA15(C2C2gata)/col-GATA15-DAP-Seq(GSE60143)/Homer	KATGATCA	1e-8	-1.872e+01	0.0000	2080.0	10.40%	4112.2	8.98%
ATHB15(HB)/col-ATHB15-DAP-Seq(GSE60143)/Homer	GYAATSATTA	1e-8	-1.848e+01	0.0000	524.0	2.62%	877.3	1.92%
Pho2(bHLH)/Yeast-Pho2-ChIP-Seq(GSE29506)/Homer	CCCACGTGCT	1e-7	-1.829e+01	0.0000	758.0	3.79%	1346.8	2.94%
PIF7(bHLH)/col-PIF7-DAP-Seq(GSE60143)/Homer	CCACGTGGNH	1e-7	-1.803e+01	0.0000	442.0	2.21%	721.2	1.58%
ABI5(bZIP)/col-ABI5-DAP-Seq(GSE60143)/Homer	GCCACGTG	1e-7	-1.793e+01	0.0000	708.0	3.54%	1249.9	2.73%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e-7	-1.744e+01	0.0000	441.0	2.21%	724.1	1.58%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e-7	-1.729e+01	0.0000	3888.0	19.44%	8083.2	17.66%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e-7	-1.715e+01	0.0000	1269.0	6.35%	2417.7	5.28%
WRKY3(WRKY)/col-WRKY3-DAP-Seq(GSE60143)/Homer	NCKTTGACYDDN	1e-7	-1.698e+01	0.0000	1076.0	5.38%	2016.2	4.40%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-7	-1.686e+01	0.0000	1254.0	6.27%	2390.4	5.22%
ATHB20(Homeobox)/colamp-ATHB20-DAP-Seq(GSE60143)/Homer	CAATHATT	1e-6	-1.590e+01	0.0000	635.0	3.17%	1124.6	2.46%
WRKY29(WRKY)/colamp-WRKY29-DAP-Seq(GSE60143)/Homer	MGTTGACTTT	1e-6	-1.583e+01	0.0000	1735.0	8.67%	3429.0	7.49%
GATA20(C2C2gata)/colamp-GATA20-DAP-Seq(GSE60143)/Homer	TNGATCNDNM	1e-6	-1.559e+01	0.0000	2724.0	13.62%	5572.9	12.17%
WRKY27(WRKY)/colamp-WRKY27-DAP-Seq(GSE60143)/Homer	NHGTTGACYTWD	1e-6	-1.556e+01	0.0000	1511.0	7.56%	2955.3	6.46%
ERF3(AP2EREBP)/colamp-ERF3-DAP-Seq(GSE60143)/Homer	ATGGCGGCGG	1e-6	-1.548e+01	0.0000	1130.0	5.65%	2151.4	4.70%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e-6	-1.517e+01	0.0000	1709.0	8.54%	3385.7	7.40%
ATHB7(Homeobox)/col-ATHB7-DAP-Seq(GSE60143)/Homer	AATGATTG	1e-6	-1.479e+01	0.0000	1151.0	5.75%	2206.1	4.82%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e-6	-1.464e+01	0.0000	895.0	4.47%	1674.0	3.66%
GATA4(C2C2gata)/col-GATA4-DAP-Seq(GSE60143)/Homer	DDWTYAGATCTR	1e-6	-1.447e+01	0.0000	807.0	4.04%	1493.9	3.26%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e-6	-1.447e+01	0.0000	625.0	3.12%	1120.9	2.45%
At4g36780(BZR)/col-At4g36780-DAP-Seq(GSE60143)/Homer	NNNNNNCACGTGNNN	1e-6	-1.428e+01	0.0000	517.0	2.58%	904.8	1.98%
bZIP44(bZIP)/colamp-bZIP44-DAP-Seq(GSE60143)/Homer	NDTGCCACGTCAGCH	1e-5	-1.373e+01	0.0000	75.0	0.38%	78.4	0.17%
LBD13(LOBAS2)/colamp-LBD13-DAP-Seq(GSE60143)/Homer	KCCGTNWTTTBCGGC	1e-5	-1.343e+01	0.0000	1257.0	6.29%	2453.9	5.36%
DREB19(AP2EREBP)/colamp-DREB19-DAP-Seq(GSE60143)/Homer	AATGTCGGTK	1e-5	-1.340e+01	0.0000	652.0	3.26%	1188.5	2.60%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-5	-1.319e+01	0.0000	1617.0	8.09%	3227.5	7.05%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-5	-1.312e+01	0.0000	7094.0	35.47%	15385.4	33.61%
WRKY65(WRKY)/colamp-WRKY65-DAP-Seq(GSE60143)/Homer	AWWWAGTCAACG	1e-5	-1.296e+01	0.0000	794.0	3.97%	1487.0	3.25%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e-5	-1.294e+01	0.0000	592.0	2.96%	1071.2	2.34%
At1g19210(AP2EREBP)/colamp-At1g19210-DAP-Seq(GSE60143)/Homer	HCACCGACCAHN	1e-5	-1.282e+01	0.0000	1633.0	8.16%	3269.7	7.14%
At5g65130(AP2EREBP)/colamp-At5g65130-DAP-Seq(GSE60143)/Homer	CCRCCGACAWTN	1e-5	-1.282e+01	0.0000	320.0	1.60%	528.8	1.16%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e-5	-1.270e+01	0.0000	194.0	0.97%	289.7	0.63%
M1BP(Zf)/S2R+-M1BP-ChIP-Seq(GSE49842)/Homer	CAGTGTGACCGT	1e-5	-1.269e+01	0.0000	376.0	1.88%	639.8	1.40%
At1g36060(AP2EREBP)/colamp-At1g36060-DAP-Seq(GSE60143)/Homer	NNWWKGTCGGTG	1e-5	-1.254e+01	0.0000	795.0	3.98%	1495.1	3.27%
WRKY26(WRKY)/colamp-WRKY26-DAP-Seq(GSE60143)/Homer	CGTTGACTWDKN	1e-5	-1.248e+01	0.0000	832.0	4.16%	1573.9	3.44%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e-5	-1.244e+01	0.0000	2651.0	13.26%	5492.4	12.00%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e-5	-1.236e+01	0.0000	135.0	0.68%	184.5	0.40%
ATHB5(HB)/colamp-ATHB5-DAP-Seq(GSE60143)/Homer	AATGATTG	1e-5	-1.201e+01	0.0000	1385.0	6.93%	2753.7	6.02%
HAT2(Homeobox)/colamp-HAT2-DAP-Seq(GSE60143)/Homer	CYAATSATTR	1e-5	-1.193e+01	0.0000	1332.0	6.66%	2642.0	5.77%
ANAC053(NAC)/colamp-ANAC053-DAP-Seq(GSE60143)/Homer	TDCTTGNNNNNCAAG	1e-5	-1.191e+01	0.0000	614.0	3.07%	1129.4	2.47%
ATHB18(Homeobox)/colamp-ATHB18-DAP-Seq(GSE60143)/Homer	YCAATSATTG	1e-5	-1.184e+01	0.0000	310.0	1.55%	518.0	1.13%
RAP212(AP2EREBP)/col-RAP212-DAP-Seq(GSE60143)/Homer	CGCCGCCATTTT	1e-5	-1.182e+01	0.0000	1176.0	5.88%	2310.2	5.05%
WRKY11(WRKY)/col-WRKY11-DAP-Seq(GSE60143)/Homer	SCGTTGACTTTN	1e-5	-1.181e+01	0.0000	217.0	1.08%	338.7	0.74%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e-5	-1.181e+01	0.0000	497.0	2.48%	892.0	1.95%
ATHB23(ZFHD)/col-ATHB23-DAP-Seq(GSE60143)/Homer	HTAATTARNN	1e-5	-1.180e+01	0.0000	1363.0	6.82%	2710.1	5.92%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e-5	-1.164e+01	0.0000	1808.0	9.04%	3673.3	8.02%
AT1G72740(MYBrelated)/colamp-AT1G72740-DAP-Seq(GSE60143)/Homer	NNWWAMCCTAAHWNN	1e-5	-1.161e+01	0.0000	1337.0	6.69%	2658.0	5.81%
ANAC094(NAC)/col-ANAC094-DAP-Seq(GSE60143)/Homer	DVCGTRNNNNNYACG	1e-4	-1.130e+01	0.0000	465.0	2.33%	832.9	1.82%
BPC1(BBRBPC)/colamp-BPC1-DAP-Seq(GSE60143)/Homer	GARGAGAGAGAA	1e-4	-1.126e+01	0.0000	981.0	4.91%	1906.2	4.16%
ATHB6(Homeobox)/Arabidopsis-HB6-ChIP-Seq(GSE80564)/Homer	CAATNATTBN	1e-4	-1.120e+01	0.0001	1118.0	5.59%	2198.8	4.80%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e-4	-1.111e+01	0.0001	1397.0	6.98%	2797.6	6.11%
GATA14(C2C2gata)/col-GATA14-DAP-Seq(GSE60143)/Homer	AYCAGATCTG	1e-4	-1.100e+01	0.0001	749.0	3.74%	1422.6	3.11%
DPL-1(E2F)/cElegans-Adult-ChIP-Seq(modEncode)/Homer	TAGCGCGC	1e-4	-1.077e+01	0.0001	1498.0	7.49%	3022.2	6.60%
GBF3(bZIP)/Arabidopsis-GBF3-ChIP-Seq(GSE80564)/Homer	TGCCACGTSAYC	1e-4	-1.054e+01	0.0001	683.0	3.42%	1291.8	2.82%
AT4G18450(AP2EREBP)/col-AT4G18450-DAP-Seq(GSE60143)/Homer	ATGGCGGCKG	1e-4	-9.947e+00	0.0002	782.0	3.91%	1508.8	3.30%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-4	-9.940e+00	0.0002	408.0	2.04%	732.3	1.60%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e-4	-9.896e+00	0.0002	2375.0	11.88%	4957.0	10.83%
Knotted(Homeobox)/Corn-KN1-ChIP-Seq(GSE39161)/Homer	GAYGNGACRGGN	1e-4	-9.715e+00	0.0002	2206.0	11.03%	4591.9	10.03%
AT5G47660(Trihelix)/colamp-AT5G47660-DAP-Seq(GSE60143)/Homer	AWTTTTACCG	1e-4	-9.650e+00	0.0002	2263.0	11.31%	4718.8	10.31%
NAP(NAC)/col-NAP-DAP-Seq(GSE60143)/Homer	ARGTTACGTRTN	1e-4	-9.644e+00	0.0002	1237.0	6.19%	2484.6	5.43%
O2(bZIP)/Corn-O2-ChIP-Seq(GSE63991)/Homer	GCTGACGTGGCA	1e-4	-9.493e+00	0.0003	260.0	1.30%	440.8	0.96%
LOB(LOBAS2)/col-LOB-DAP-Seq(GSE60143)/Homer	CGCCGKAWWTTHCGS	1e-4	-9.365e+00	0.0003	386.0	1.93%	694.1	1.52%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-4	-9.337e+00	0.0003	2402.0	12.01%	5033.5	11.00%
DREB26(AP2EREBP)/col-DREB26-DAP-Seq(GSE60143)/Homer	CCACCGACAH	1e-4	-9.333e+00	0.0003	290.0	1.45%	501.0	1.09%
HAT1(Homeobox)/col-HAT1-DAP-Seq(GSE60143)/Homer	SCAATCATTGNN	1e-4	-9.243e+00	0.0004	279.0	1.40%	480.9	1.05%
At5g08750(C3H)/col-At5g08750-DAP-Seq(GSE60143)/Homer	NWDTTGCGGCTR	1e-3	-9.137e+00	0.0004	579.0	2.90%	1095.1	2.39%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-3	-9.132e+00	0.0004	215.0	1.07%	355.3	0.78%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e-3	-9.126e+00	0.0004	199.0	1.00%	324.3	0.71%
ATHB24(ZFHD)/colamp-ATHB24-DAP-Seq(GSE60143)/Homer	TAATTAAS	1e-3	-9.090e+00	0.0004	1119.0	5.59%	2242.5	4.90%
MYB27(MYB)/colamp-MYB27-DAP-Seq(GSE60143)/Homer	TACCTAACWT	1e-3	-9.073e+00	0.0004	206.0	1.03%	338.4	0.74%
bHLH157(bHLH)/col-bHLH157-DAP-Seq(GSE60143)/Homer	KACACGTCTCTY	1e-3	-9.040e+00	0.0004	308.0	1.54%	540.3	1.18%
WRKY40(WRKY)/colamp-WRKY40-DAP-Seq(GSE60143)/Homer	AHWAGTCAAC	1e-3	-9.032e+00	0.0004	957.0	4.78%	1896.8	4.14%
ATHB6(Homeobox)/col-ATHB6-DAP-Seq(GSE60143)/Homer	AATGATTG	1e-3	-8.998e+00	0.0004	1845.0	9.22%	3820.5	8.35%
GATA12(C2C2gata)/col-GATA12-DAP-Seq(GSE60143)/Homer	YAGATCTRAW	1e-3	-8.972e+00	0.0004	628.0	3.14%	1200.3	2.62%
ERF5(AP2EREBP)/colamp-ERF5-DAP-Seq(GSE60143)/Homer	DCMGCCGCCA	1e-3	-8.703e+00	0.0006	880.0	4.40%	1738.9	3.80%
CBF2(AP2EREBP)/colamp-CBF2-DAP-Seq(GSE60143)/Homer	YBRCCGACATNNNNN	1e-3	-8.691e+00	0.0006	441.0	2.21%	815.7	1.78%
PABPC1(?)/MEL-PABC1-CLIP-Seq(GSE69755)/Homer	HAATAAAGNN	1e-3	-8.662e+00	0.0006	2594.0	12.97%	5478.4	11.97%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e-3	-8.659e+00	0.0006	434.0	2.17%	801.2	1.75%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e-3	-8.566e+00	0.0007	394.0	1.97%	720.0	1.57%
CBF3(AP2EREBP)/colamp-CBF3-DAP-Seq(GSE60143)/Homer	YNRCCGACATNN	1e-3	-8.405e+00	0.0008	472.0	2.36%	883.9	1.93%
SUT1?/SacCer-Promoters/Homer	CCCCGCGC	1e-3	-8.329e+00	0.0008	11126.0	55.63%	24789.4	54.15%
ANAC062(NAC)/colamp-ANAC062-DAP-Seq(GSE60143)/Homer	TACTTANTNWNYAAG	1e-3	-8.210e+00	0.0009	434.0	2.17%	807.3	1.76%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-3	-8.121e+00	0.0010	2603.0	13.01%	5517.0	12.05%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-3	-8.052e+00	0.0011	610.0	3.05%	1177.7	2.57%
ATHB34(ZFHD)/colamp-ATHB34-DAP-Seq(GSE60143)/Homer	TRATTARS	1e-3	-8.049e+00	0.0011	1188.0	5.94%	2414.8	5.28%
DEAR2(AP2EREBP)/colamp-DEAR2-DAP-Seq(GSE60143)/Homer	HCACCGACAWHD	1e-3	-7.957e+00	0.0012	1199.0	6.00%	2440.8	5.33%
ANAC057(NAC)/colamp-ANAC057-DAP-Seq(GSE60143)/Homer	DVCKTGNNNNNCAMG	1e-3	-7.942e+00	0.0012	873.0	4.37%	1738.7	3.80%
EMB1789(C3H)/col-EMB1789-DAP-Seq(GSE60143)/Homer	TWTTTACCGYND	1e-3	-7.645e+00	0.0016	575.0	2.88%	1110.7	2.43%
AT1G44830(AP2EREBP)/col-AT1G44830-DAP-Seq(GSE60143)/Homer	NCCACCGACA	1e-3	-7.496e+00	0.0018	363.0	1.81%	671.0	1.47%
GATA1(C2C2gata)/colamp-GATA1-DAP-Seq(GSE60143)/Homer	DDWWYYAGATCTRRW	1e-3	-7.485e+00	0.0019	392.0	1.96%	730.8	1.60%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e-3	-7.383e+00	0.0020	800.0	4.00%	1593.7	3.48%
ANAC013(NAC)/col-ANAC013-DAP-Seq(GSE60143)/Homer	CTTGNNNNNCAAGNA	1e-3	-7.172e+00	0.0025	501.0	2.50%	962.0	2.10%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e-2	-6.846e+00	0.0035	144.0	0.72%	236.5	0.52%
WRKY42(WRKY)/colamp-WRKY42-DAP-Seq(GSE60143)/Homer	NAAAGTCAACGN	1e-2	-6.846e+00	0.0035	602.0	3.01%	1181.6	2.58%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e-2	-6.512e+00	0.0048	997.0	4.98%	2037.0	4.45%
ASHR1(ND)/col-ASHR1-DAP-Seq(GSE60143)/Homer	NTGGTGAN	1e-2	-6.423e+00	0.0053	2024.0	10.12%	4293.9	9.38%
AT3G42860(zfGRF)/col-AT3G42860-DAP-Seq(GSE60143)/Homer	CGTTGACTTN	1e-2	-6.394e+00	0.0054	396.0	1.98%	754.4	1.65%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e-2	-6.362e+00	0.0055	283.0	1.42%	520.9	1.14%
TBP3(MYBrelated)/col-TBP3-DAP-Seq(GSE60143)/Homer	VYTAGGGCAN	1e-2	-6.331e+00	0.0057	1075.0	5.38%	2211.2	4.83%
NTM2(NAC)/col-NTM2-DAP-Seq(GSE60143)/Homer	CTTRTNNNAYAAGBH	1e-2	-6.217e+00	0.0064	611.0	3.06%	1212.8	2.65%
CRC(C2C2YABBY)/col-CRC-DAP-Seq(GSE60143)/Homer	TWATSATA	1e-2	-6.210e+00	0.0064	1956.0	9.78%	4150.1	9.07%
CRF4(AP2EREBP)/colamp-CRF4-DAP-Seq(GSE60143)/Homer	CGCCGCCA	1e-2	-6.127e+00	0.0069	1062.0	5.31%	2188.3	4.78%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e-2	-6.037e+00	0.0075	3471.0	17.36%	7533.3	16.46%
CUC2(NAC)/colamp-CUC2-DAP-Seq(GSE60143)/Homer	TRCKTGTNNNWCAMG	1e-2	-5.948e+00	0.0082	332.0	1.66%	627.6	1.37%
MYB44(MYB)/colamp-MYB44-DAP-Seq(GSE60143)/Homer	CVGTTWWKTCNGTTA	1e-2	-5.945e+00	0.0082	135.0	0.68%	226.4	0.49%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-2	-5.902e+00	0.0085	891.0	4.46%	1822.2	3.98%
TATA-box/SacCer-Promoters/Homer	BBHWTATATA	1e-2	-5.806e+00	0.0094	552.0	2.76%	1094.9	2.39%
AGL63(MADS)/col-AGL63-DAP-Seq(GSE60143)/Homer	TTCCAAWWWTGG	1e-2	-5.754e+00	0.0098	1095.0	5.47%	2270.0	4.96%
ANAC087(NAC)/col-ANAC087-DAP-Seq(GSE60143)/Homer	WVCKTGHNNNWCAMG	1e-2	-5.751e+00	0.0098	322.0	1.61%	609.6	1.33%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-2	-5.649e+00	0.0109	941.0	4.71%	1937.2	4.23%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e-2	-5.342e+00	0.0147	3174.0	15.87%	6900.6	15.07%
At1g78700(BZR)/col-At1g78700-DAP-Seq(GSE60143)/Homer	NNNNCACGTGNNNNN	1e-2	-5.293e+00	0.0154	471.0	2.35%	931.0	2.03%
ATHB25(ZFHD)/colamp-ATHB25-DAP-Seq(GSE60143)/Homer	TAATTAVB	1e-2	-5.270e+00	0.0157	1682.0	8.41%	3577.1	7.81%
GATA11(C2C2gata)/col-GATA11-DAP-Seq(GSE60143)/Homer	DDHYYAGATCTR	1e-2	-5.163e+00	0.0174	460.0	2.30%	910.8	1.99%
LBD23(LOBAS2)/colamp-LBD23-DAP-Seq(GSE60143)/Homer	GCGNAWWWTNCGCYW	1e-2	-5.146e+00	0.0177	1404.0	7.02%	2967.2	6.48%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e-2	-5.131e+00	0.0179	621.0	3.10%	1256.1	2.74%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e-2	-5.024e+00	0.0198	312.0	1.56%	599.9	1.31%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-2	-4.997e+00	0.0203	397.0	1.98%	779.5	1.70%
SeqBias: G/A bias	RRRRRRRRRR	1e-2	-4.938e+00	0.0215	19988.0	99.94%	45716.4	99.87%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e-2	-4.871e+00	0.0229	395.0	1.98%	777.0	1.70%
LIN-39(Homeobox)/cElegans.L3-LIN39-ChIP-Seq(modEncode)/Homer	ATGATTRATG	1e-2	-4.856e+00	0.0231	1772.0	8.86%	3792.1	8.28%
ANAC004(NAC)/colamp-ANAC004-DAP-Seq(GSE60143)/Homer	WNCTTVYNNNRBAAG	1e-2	-4.784e+00	0.0248	406.0	2.03%	802.8	1.75%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e-2	-4.760e+00	0.0253	379.0	1.90%	745.3	1.63%
At1g22810(AP2EREBP)/colamp-At1g22810-DAP-Seq(GSE60143)/Homer	BCACCGACANNN	1e-2	-4.637e+00	0.0285	437.0	2.19%	871.4	1.90%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e-1	-4.534e+00	0.0315	156.0	0.78%	283.0	0.62%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-1	-4.518e+00	0.0319	1507.0	7.54%	3217.5	7.03%
LMI1(HB)/colamp-LMI1-DAP-Seq(GSE60143)/Homer	AATTATTG	1e-1	-4.509e+00	0.0321	870.0	4.35%	1813.4	3.96%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e-1	-4.505e+00	0.0322	62.0	0.31%	96.7	0.21%
TATA-box/Drosophila-Promoters/Homer	CTATAAAAGCSV	1e-1	-4.448e+00	0.0339	79.0	0.40%	129.8	0.28%
WUS1(Homeobox)/colamp-WUS1-DAP-Seq(GSE60143)/Homer	CAWTCATTCA	1e-1	-4.418e+00	0.0348	743.0	3.72%	1538.4	3.36%
SRS7(SRS)/colamp-SRS7-DAP-Seq(GSE60143)/Homer	HATAGGTTTH	1e-1	-4.347e+00	0.0373	4506.0	22.53%	9953.6	21.74%
bZIP42(bZIP)/colamp-bZIP42-DAP-Seq(GSE60143)/Homer	GCCACGTCAGCA	1e-1	-4.347e+00	0.0373	13.0	0.07%	11.4	0.02%
WRKY30(WRKY)/colamp-WRKY30-DAP-Seq(GSE60143)/Homer	CGTTGACTTN	1e-1	-4.229e+00	0.0417	415.0	2.08%	832.7	1.82%
MYB118(MYB)/colamp-MYB118-DAP-Seq(GSE60143)/Homer	TAWCCGTTAC	1e-1	-4.061e+00	0.0492	412.0	2.06%	830.0	1.81%
ESE3(AP2EREBP)/col-ESE3-DAP-Seq(GSE60143)/Homer	GACGGTGG	1e-1	-4.026e+00	0.0508	2005.0	10.03%	4346.9	9.50%
At1g76110(ARID)/colamp-At1g76110-DAP-Seq(GSE60143)/Homer	ATTTAATG	1e-1	-3.987e+00	0.0526	733.0	3.67%	1528.1	3.34%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e-1	-3.949e+00	0.0545	227.0	1.14%	437.2	0.96%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e-1	-3.876e+00	0.0585	711.0	3.55%	1483.2	3.24%
CUC3(NAC)/col-CUC3-DAP-Seq(GSE60143)/Homer	TRCKTGWNNNACAMG	1e-1	-3.875e+00	0.0585	331.0	1.65%	659.5	1.44%
AT1G01250(AP2EREBP)/col-AT1G01250-DAP-Seq(GSE60143)/Homer	YCACCGACAHTW	1e-1	-3.833e+00	0.0607	80.0	0.40%	136.0	0.30%
ATHB13(Homeobox)/col-ATHB13-DAP-Seq(GSE60143)/Homer	CAATAATT	1e-1	-3.780e+00	0.0638	1444.0	7.22%	3106.3	6.79%
ANAC047(NAC)/colamp-ANAC047-DAP-Seq(GSE60143)/Homer	WACACGTAACTT	1e-1	-3.754e+00	0.0652	821.0	4.11%	1729.0	3.78%
At5g66730(C2H2)/colamp-At5g66730-DAP-Seq(GSE60143)/Homer	TTTGTCKTTTTK	1e-1	-3.750e+00	0.0653	408.0	2.04%	827.3	1.81%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e-1	-3.741e+00	0.0657	31.0	0.15%	43.4	0.09%
CES-1(Homeobox)/cElegans-L1-CES1-ChIP-Seq(modEncode)/Homer	AAATTSAATTTN	1e-1	-3.673e+00	0.0701	606.0	3.03%	1259.8	2.75%
MS188(MYB)/colamp-MS188-DAP-Seq(GSE60143)/Homer	WARKTAGGTRRA	1e-1	-3.601e+00	0.0751	905.0	4.52%	1918.1	4.19%
CUC1(NAC)/col-CUC1-DAP-Seq(GSE60143)/Homer	TACTTGTNNNACAAG	1e-1	-3.560e+00	0.0780	449.0	2.25%	920.3	2.01%
ATHB21(HB)/colamp-ATHB21-DAP-Seq(GSE60143)/Homer	YCAATWAT	1e-1	-3.533e+00	0.0800	628.0	3.14%	1311.7	2.87%
RKD2(RWPRK)/colamp-RKD2-DAP-Seq(GSE60143)/Homer	GACKTTTCRDCTTCC	1e-1	-3.456e+00	0.0861	981.0	4.91%	2091.4	4.57%
REM16(ABI3VP1)/col-REM16-DAP-Seq(GSE60143)/Homer	DTTTTTSCCGSMAAA	1e-1	-3.431e+00	0.0880	4.0	0.02%	1.1	0.00%
NAC2(NAC)/colamp-NAC2-DAP-Seq(GSE60143)/Homer	TDCTTGNNNNNCAAG	1e-1	-3.396e+00	0.0909	710.0	3.55%	1495.7	3.27%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e-1	-3.395e+00	0.0909	211.0	1.05%	412.6	0.90%
EPR1(MYBrelated)/colamp-EPR1-DAP-Seq(GSE60143)/Homer	AAATATCT	1e-1	-3.393e+00	0.0909	466.0	2.33%	961.4	2.10%
LHY1(MYBrelated)/col-LHY1-DAP-Seq(GSE60143)/Homer	AAATATCT	1e-1	-3.393e+00	0.0909	466.0	2.33%	961.4	2.10%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e-1	-3.359e+00	0.0931	246.0	1.23%	487.6	1.07%
MGP(C2H2)/colamp-MGP-DAP-Seq(GSE60143)/Homer	TTTTGTCGTTTW	1e-1	-3.301e+00	0.0985	334.0	1.67%	677.9	1.48%
ATHB33(ZFHD)/col-ATHB33-DAP-Seq(GSE60143)/Homer	NGTRATTAAK	1e-1	-3.275e+00	0.1008	1869.0	9.35%	4078.1	8.91%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e-1	-3.273e+00	0.1008	1625.0	8.12%	3532.2	7.72%
DREB2(AP2EREBP)/col-DREB2-DAP-Seq(GSE60143)/Homer	TMACCGACATWA	1e-1	-3.258e+00	0.1019	447.0	2.23%	923.6	2.02%
WRKY45(WRKY)/col-WRKY45-DAP-Seq(GSE60143)/Homer	HNNNKTTGACTWWNH	1e-1	-3.234e+00	0.1041	599.0	3.00%	1256.7	2.75%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e-1	-3.229e+00	0.1043	139.0	0.69%	263.3	0.58%
At1g75490(AP2EREBP)/colamp-At1g75490-DAP-Seq(GSE60143)/Homer	CACCGMCT	1e-1	-3.219e+00	0.1051	2392.0	11.96%	5256.0	11.48%
ERF7(AP2EREBP)/col-ERF7-DAP-Seq(GSE60143)/Homer	ATGRCGGCGG	1e-1	-3.218e+00	0.1051	1911.0	9.55%	4175.3	9.12%
GT2(Trihelix)/colamp-GT2-DAP-Seq(GSE60143)/Homer	AMGGTAAAWWWN	1e-1	-3.206e+00	0.1059	1552.0	7.76%	3372.8	7.37%
MYB98(MYB)/col-MYB98-DAP-Seq(GSE60143)/Homer	NWDCCGTTAC	1e-1	-3.122e+00	0.1148	411.0	2.05%	848.6	1.85%
WRKY8(WRKY)/colamp-WRKY8-DAP-Seq(GSE60143)/Homer	CGTTGACTTT	1e-1	-3.118e+00	0.1149	190.0	0.95%	372.4	0.81%
AT3G25990(Trihelix)/colamp-AT3G25990-DAP-Seq(GSE60143)/Homer	TTAACCATAG	1e-1	-3.111e+00	0.1153	982.0	4.91%	2106.7	4.60%
SEP3(MADS)/Arabidoposis-Flower-Sep3-ChIP-Seq/Homer	CCAAAAAGGG	1e-1	-3.104e+00	0.1159	1658.0	8.29%	3614.9	7.90%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e-1	-3.099e+00	0.1161	179.0	0.90%	349.1	0.76%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e-1	-3.080e+00	0.1181	917.0	4.58%	1964.0	4.29%
AT3G57600(AP2EREBP)/col-AT3G57600-DAP-Seq(GSE60143)/Homer	GGCGGTGG	1e-1	-3.068e+00	0.1192	1435.0	7.17%	3117.4	6.81%
ANAC103(NAC)/col-ANAC103-DAP-Seq(GSE60143)/Homer	AACTTGNWNWNCAAG	1e-1	-3.052e+00	0.1207	407.0	2.04%	841.7	1.84%
DDF1(AP2EREBP)/col-DDF1-DAP-Seq(GSE60143)/Homer	GCCGACAT	1e-1	-2.978e+00	0.1297	391.0	1.96%	808.8	1.77%
CAMTA5(CAMTA)/col-CAMTA5-DAP-Seq(GSE60143)/Homer	ACGCGTTTTANACRC	1e-1	-2.961e+00	0.1315	366.0	1.83%	754.9	1.65%
SHN3(AP2EREBP)/col-SHN3-DAP-Seq(GSE60143)/Homer	CCGCCGCC	1e-1	-2.941e+00	0.1338	721.0	3.60%	1534.1	3.35%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-1	-2.922e+00	0.1360	3021.0	15.10%	6691.4	14.62%
VND4(NAC)/colamp-VND4-DAP-Seq(GSE60143)/Homer	WRCTTGWANWWCAAG	1e-1	-2.911e+00	0.1370	754.0	3.77%	1608.9	3.51%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e-1	-2.846e+00	0.1458	103.0	0.52%	193.2	0.42%
SeqBias: CG-repeat	CGCGCGCGCG	1e-1	-2.841e+00	0.1463	3273.0	16.36%	7266.2	15.87%
Pho4(bHLH)/Yeast-Pho4-ChIP-Seq(GSE29506)/Homer	AAGCACGTGBGD	1e-1	-2.826e+00	0.1480	342.0	1.71%	705.4	1.54%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e-1	-2.733e+00	0.1621	915.0	4.58%	1972.9	4.31%
HuR(?)/HEK293-HuR-CLIP-Seq(GSE87887)/Homer	BTTTGGTTTG	1e-1	-2.728e+00	0.1624	6025.0	30.12%	13520.8	29.54%
AT2G28920(ND)/col-AT2G28920-DAP-Seq(GSE60143)/Homer	WAGATATTTWTW	1e-1	-2.726e+00	0.1624	317.0	1.58%	653.4	1.43%
ERF13(AP2EREBP)/colamp-ERF13-DAP-Seq(GSE60143)/Homer	TYAGCCGCCATT	1e-1	-2.693e+00	0.1672	1657.0	8.29%	3633.8	7.94%
At1g77640(AP2EREBP)/col-At1g77640-DAP-Seq(GSE60143)/Homer	TGTCGGTGGA	1e-1	-2.648e+00	0.1746	196.0	0.98%	393.6	0.86%
LBD2(LOBAS2)/colamp-LBD2-DAP-Seq(GSE60143)/Homer	TCCGAWTTTTTCGGN	1e-1	-2.647e+00	0.1746	295.0	1.47%	607.1	1.33%
GTL1(Trihelix)/colamp-GTL1-DAP-Seq(GSE60143)/Homer	WWTTTACCKY	1e-1	-2.522e+00	0.1968	1639.0	8.20%	3602.3	7.87%
ANAC050(NAC)/colamp-ANAC050-DAP-Seq(GSE60143)/Homer	WNCTTGNNNNNCAAG	1e-1	-2.511e+00	0.1986	595.0	2.97%	1271.0	2.78%
At2g44940(AP2EREBP)/colamp-At2g44940-DAP-Seq(GSE60143)/Homer	NYACCGACAHNNNNN	1e-1	-2.490e+00	0.2021	183.0	0.92%	368.8	0.81%
ANAC092(NAC)/colamp-ANAC092-DAP-Seq(GSE60143)/Homer	WRCKTGWNNNWCAMG	1e-1	-2.417e+00	0.2169	397.0	1.98%	836.5	1.83%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e-1	-2.364e+00	0.2282	41.0	0.21%	71.6	0.16%
AT3G58630(Trihelix)/col-AT3G58630-DAP-Seq(GSE60143)/Homer	TCTCCGGCGA	1e-1	-2.340e+00	0.2330	232.0	1.16%	477.8	1.04%
RRTF1(AP2EREBP)/colamp-RRTF1-DAP-Seq(GSE60143)/Homer	CCGCCGCHATTT	1e-1	-2.335e+00	0.2336	287.0	1.44%	597.6	1.31%
ANAC075(NAC)/col-ANAC075-DAP-Seq(GSE60143)/Homer	CTTSWWNWWSAAGYT	1e-1	-2.320e+00	0.2365	322.0	1.61%	674.7	1.47%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-2.281e+00	0.2452	3072.0	15.36%	6853.4	14.97%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-2.223e+00	0.2594	369.0	1.85%	780.4	1.70%
ANAC096(NAC)/colamp-ANAC096-DAP-Seq(GSE60143)/Homer	TACTTGWNNNWCAAG	1e0	-2.221e+00	0.2594	678.0	3.39%	1465.7	3.20%
ERF4(AP2EREBP)/colamp-ERF4-DAP-Seq(GSE60143)/Homer	WDWTGGCGGCGG	1e0	-2.158e+00	0.2753	1542.0	7.71%	3405.1	7.44%
At4g28140(AP2EREBP)/colamp-At4g28140-DAP-Seq(GSE60143)/Homer	DCCACCGACCAW	1e0	-2.150e+00	0.2768	324.0	1.62%	683.0	1.49%
MYB57(MYB)/col-MYB57-DAP-Seq(GSE60143)/Homer	TTACCTAACT	1e0	-2.146e+00	0.2771	581.0	2.90%	1252.3	2.74%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e0	-2.145e+00	0.2771	1527.0	7.63%	3372.1	7.37%
ERF11(AP2EREBP)/col-ERF11-DAP-Seq(GSE60143)/Homer	RTGGCGGCGG	1e0	-2.100e+00	0.2887	1349.0	6.74%	2975.0	6.50%
PCF/Arabidopsis-Promoters/Homer	NNWWWTGGGCYTDDN	1e0	-2.097e+00	0.2890	271.0	1.35%	568.7	1.24%
AT2G28810(C2C2dof)/colamp-AT2G28810-DAP-Seq(GSE60143)/Homer	VAAAAAGTWA	1e0	-2.094e+00	0.2891	3770.0	18.85%	8452.5	18.47%
Trl(Zf)/S2-GAGAfactor-ChIP-Seq(GSE40646)/Homer	RGAGAGAG	1e0	-2.077e+00	0.2933	4323.0	21.62%	9710.4	21.21%
RAV1(RAV)/colamp-RAV1-DAP-Seq(GSE60143)/Homer	TWWTTTCTGTTG	1e0	-2.071e+00	0.2942	1010.0	5.05%	2214.6	4.84%
At4g31060(AP2EREBP)/colamp-At4g31060-DAP-Seq(GSE60143)/Homer	CACCGACAAW	1e0	-2.043e+00	0.3020	348.0	1.74%	739.3	1.62%
WRKY22(WRKY)/colamp-WRKY22-DAP-Seq(GSE60143)/Homer	WWAAAGTCAACK	1e0	-2.021e+00	0.3078	834.0	4.17%	1822.8	3.98%
AT2G33550(Trihelix)/colamp-AT2G33550-DAP-Seq(GSE60143)/Homer	TTTAAGGGCAYTTTT	1e0	-1.996e+00	0.3148	2838.0	14.19%	6347.0	13.87%
WRKY21(WRKY)/colamp-WRKY21-DAP-Seq(GSE60143)/Homer	DCGTTGACTTTT	1e0	-1.992e+00	0.3154	142.0	0.71%	289.4	0.63%
DEAR5(AP2EREBP)/col-DEAR5-DAP-Seq(GSE60143)/Homer	NDWTGTCGGTGRWDN	1e0	-1.974e+00	0.3200	140.0	0.70%	285.7	0.62%
ANAC058(NAC)/col-ANAC058-DAP-Seq(GSE60143)/Homer	TWCTTGTDNNACAAG	1e0	-1.956e+00	0.3251	562.0	2.81%	1217.2	2.66%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e0	-1.939e+00	0.3298	1473.0	7.36%	3263.7	7.13%
ABF1/SacCer-Promoters/Homer	CGTRNAAARTGA	1e0	-1.923e+00	0.3345	258.0	1.29%	544.6	1.19%
TINY(AP2EREBP)/col-TINY-DAP-Seq(GSE60143)/Homer	NNCACCGACA	1e0	-1.893e+00	0.3439	244.0	1.22%	514.4	1.12%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	-1.873e+00	0.3499	47.0	0.24%	88.5	0.19%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-1.865e+00	0.3519	294.0	1.47%	625.9	1.37%
SND2(NAC)/colamp-SND2-DAP-Seq(GSE60143)/Homer	CTTVWNNNWBAAGNW	1e0	-1.856e+00	0.3542	549.0	2.74%	1192.5	2.61%
TF3A(C2H2)/col-TF3A-DAP-Seq(GSE60143)/Homer	NNDDGAGGAGGWNNN	1e0	-1.793e+00	0.3761	2174.0	10.87%	4858.7	10.61%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-1.777e+00	0.3813	3984.0	19.92%	8969.5	19.59%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-1.766e+00	0.3846	78.0	0.39%	155.1	0.34%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-1.748e+00	0.3906	230.0	1.15%	487.3	1.06%
ABR1(AP2EREBP)/colamp-ABR1-DAP-Seq(GSE60143)/Homer	AAATGGCGGCGG	1e0	-1.741e+00	0.3923	1357.0	6.78%	3014.6	6.59%
At2g03500(G2like)/col-At2g03500-DAP-Seq(GSE60143)/Homer	WWAGAATATTCT	1e0	-1.734e+00	0.3942	233.0	1.17%	494.6	1.08%
EFL-1(E2F)/cElegans-L1-EFL1-ChIP-Seq(modEncode)/Homer	TGCAARYGCGCTCYA	1e0	-1.721e+00	0.3986	23.0	0.11%	40.4	0.09%
WRKY47(WRKY)/colamp-WRKY47-DAP-Seq(GSE60143)/Homer	WAAGTCAACGBT	1e0	-1.712e+00	0.4011	377.0	1.88%	814.3	1.78%
VND2(NAC)/col-VND2-DAP-Seq(GSE60143)/Homer	DNCKTNNNNNNNAAG	1e0	-1.707e+00	0.4019	984.0	4.92%	2175.6	4.75%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-1.680e+00	0.4123	101.0	0.51%	206.9	0.45%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	-1.615e+00	0.4386	26.0	0.13%	47.5	0.10%
AT1G23810(Orphan)/col-AT1G23810-DAP-Seq(GSE60143)/Homer	TTCTAGAAGSTTCTA	1e0	-1.614e+00	0.4386	38.0	0.19%	72.2	0.16%
Unknown1(NR/Ini-like)/Drosophila-Promoters/Homer	MYGGTCACACTG	1e0	-1.608e+00	0.4398	272.0	1.36%	584.4	1.28%
ANAC016(NAC)/col-ANAC016-DAP-Seq(GSE60143)/Homer	WNCTTGNNNNNCAMG	1e0	-1.605e+00	0.4398	870.0	4.35%	1924.4	4.20%
AT1G04880(ARID)/colamp-AT1G04880-DAP-Seq(GSE60143)/Homer	AAACTATATADTATA	1e0	-1.575e+00	0.4523	90.0	0.45%	184.2	0.40%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e0	-1.575e+00	0.4523	1463.0	7.32%	3265.7	7.13%
SPL14(SBP)/col-SPL14-DAP-Seq(GSE60143)/Homer	NNWHTGTACGGAHNH	1e0	-1.567e+00	0.4537	138.0	0.69%	289.7	0.63%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-1.561e+00	0.4553	518.0	2.59%	1135.9	2.48%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-1.545e+00	0.4616	415.0	2.08%	905.7	1.98%
CAMTA1(CAMTA)/col-CAMTA1-DAP-Seq(GSE60143)/Homer	WWAACGCGTT	1e0	-1.532e+00	0.4668	574.0	2.87%	1262.2	2.76%
LBD19(LOBAS2)/colamp-LBD19-DAP-Seq(GSE60143)/Homer	CCKGAAWTTCMGGAW	1e0	-1.511e+00	0.4754	2533.0	12.67%	5697.9	12.45%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-1.504e+00	0.4776	203.0	1.01%	434.5	0.95%
AT4G00250(GeBP)/col-AT4G00250-DAP-Seq(GSE60143)/Homer	WDTGGATAAKRT	1e0	-1.500e+00	0.4786	748.0	3.74%	1656.0	3.62%
SPL1(SBP)/colamp-SPL1-DAP-Seq(GSE60143)/Homer	HYGTACDTWH	1e0	-1.491e+00	0.4818	2257.0	11.29%	5072.9	11.08%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-1.474e+00	0.4887	107.0	0.53%	223.6	0.49%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	-1.459e+00	0.4952	54.0	0.27%	108.6	0.24%
MYB121(MYB)/col-MYB121-DAP-Seq(GSE60143)/Homer	YNTACCTAACWW	1e0	-1.450e+00	0.4983	353.0	1.76%	770.8	1.68%
AT3G10113(MYBrelated)/col-AT3G10113-DAP-Seq(GSE60143)/Homer	WNAAATATCWWN	1e0	-1.450e+00	0.4983	522.0	2.61%	1149.5	2.51%
ATHB53(HB)/col-ATHB53-DAP-Seq(GSE60143)/Homer	CAATAATT	1e0	-1.443e+00	0.4996	557.0	2.79%	1228.3	2.68%
ERF10(AP2EREBP)/col-ERF10-DAP-Seq(GSE60143)/Homer	RTGGCGGCGG	1e0	-1.433e+00	0.5033	1082.0	5.41%	2413.9	5.27%
At4g32800(AP2EREBP)/colamp-At4g32800-DAP-Seq(GSE60143)/Homer	DYCACCGACAHWWWH	1e0	-1.432e+00	0.5033	92.0	0.46%	191.6	0.42%
AT1G76880(Trihelix)/col-AT1G76880-DAP-Seq(GSE60143)/Homer	ACGGTAAAAW	1e0	-1.429e+00	0.5033	502.0	2.51%	1105.7	2.42%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-1.423e+00	0.5051	69.0	0.34%	141.8	0.31%
E2FA(E2FDP)/colamp-E2FA-DAP-Seq(GSE60143)/Homer	WWTGGCGCCAWWWNN	1e0	-1.397e+00	0.5173	663.0	3.31%	1469.9	3.21%
SeqBias: polyA-repeat	AAAAAAAAAA	1e0	-1.352e+00	0.5395	18980.0	94.90%	43383.5	94.77%
ERF8(AP2EREBP)/colamp-ERF8-DAP-Seq(GSE60143)/Homer	CGCCGYCATW	1e0	-1.349e+00	0.5398	1537.0	7.69%	3450.7	7.54%
caudal(Homeobox)/Drosophila-Embryos-ChIP-Chip(modEncode)/Homer	GGYCATAAAW	1e0	-1.338e+00	0.5451	1008.0	5.04%	2253.0	4.92%
HSFC1(HSF)/col-HSFC1-DAP-Seq(GSE60143)/Homer	HTTCTAGAADCTTCT	1e0	-1.328e+00	0.5490	158.0	0.79%	339.9	0.74%
CEJ1(AP2EREBP)/col-CEJ1-DAP-Seq(GSE60143)/Homer	WWTGTCGGTG	1e0	-1.315e+00	0.5548	1025.0	5.12%	2292.6	5.01%
ANAC011(NAC)/col-ANAC011-DAP-Seq(GSE60143)/Homer	TDCTTGYRNNDCAAG	1e0	-1.263e+00	0.5833	335.0	1.68%	738.0	1.61%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e0	-1.261e+00	0.5834	634.0	3.17%	1411.7	3.08%
ERF15(AP2EREBP)/colamp-ERF15-DAP-Seq(GSE60143)/Homer	WDHAGCMGCCAT	1e0	-1.258e+00	0.5835	3424.0	17.12%	7752.7	16.94%
ERF1(AP2EREBP)/colamp-ERF1-DAP-Seq(GSE60143)/Homer	GGCGGCTR	1e0	-1.257e+00	0.5835	1152.0	5.76%	2584.7	5.65%
TCP20(TCP)/col-TCP20-DAP-Seq(GSE60143)/Homer	GGDCCCAC	1e0	-1.254e+00	0.5835	524.0	2.62%	1163.1	2.54%
SPL13(SBP)/col-SPL13-DAP-Seq(GSE60143)/Homer	WAHTGTACGGAH	1e0	-1.252e+00	0.5835	89.0	0.45%	188.4	0.41%
MYB33(MYB)/col-MYB33-DAP-Seq(GSE60143)/Homer	DDTYNGTTAN	1e0	-1.240e+00	0.5890	2755.0	13.78%	6230.1	13.61%
RAP211(AP2EREBP)/colamp-RAP211-DAP-Seq(GSE60143)/Homer	RGCCGGCYWW	1e0	-1.227e+00	0.5956	3496.0	17.48%	7921.0	17.30%
SeqBias: GCW-triplet	GCWGCWGCWGCW	1e0	-1.212e+00	0.6030	19972.0	99.86%	45701.1	99.84%
AT1G71450(AP2EREBP)/col-AT1G71450-DAP-Seq(GSE60143)/Homer	DHDWTGTCGGTG	1e0	-1.208e+00	0.6043	1957.0	9.79%	4417.5	9.65%
NTM1(NAC)/col-NTM1-DAP-Seq(GSE60143)/Homer	ACTTRTARAASAAGT	1e0	-1.202e+00	0.6067	552.0	2.76%	1229.3	2.69%
AT4G12670(MYBrelated)/col-AT4G12670-DAP-Seq(GSE60143)/Homer	AGGGTTTAGGGTTTA	1e0	-1.191e+00	0.6121	1.0	0.01%	0.8	0.00%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-1.190e+00	0.6121	402.0	2.01%	891.3	1.95%
ANAC005(NAC)/col-ANAC005-DAP-Seq(GSE60143)/Homer	WVCTTVTWNHABAAG	1e0	-1.168e+00	0.6232	522.0	2.61%	1163.2	2.54%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-1.147e+00	0.6355	2018.0	10.09%	4562.4	9.97%
At5g08330(TCP)/col-At5g08330-DAP-Seq(GSE60143)/Homer	GGRCCCAC	1e0	-1.127e+00	0.6468	852.0	4.26%	1913.3	4.18%
bHLH10(bHLH)/colamp-bHLH10-DAP-Seq(GSE60143)/Homer	YACCGACA	1e0	-1.121e+00	0.6489	256.0	1.28%	565.8	1.24%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e0	-1.106e+00	0.6577	528.0	2.64%	1180.2	2.58%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-1.076e+00	0.6761	381.0	1.91%	849.4	1.86%
ZML2(C2C2gata)/col-ZML2-DAP-Seq(GSE60143)/Homer	CATCATCATC	1e0	-1.057e+00	0.6875	250.0	1.25%	554.7	1.21%
ANAC028(NAC)/col-ANAC028-DAP-Seq(GSE60143)/Homer	WRCTTGNNNNNCAAG	1e0	-1.053e+00	0.6887	744.0	3.72%	1673.6	3.66%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e0	-1.049e+00	0.6899	706.0	3.53%	1587.3	3.47%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-1.042e+00	0.6933	458.0	2.29%	1025.3	2.24%
CBF4(AP2EREBP)/colamp-CBF4-DAP-Seq(GSE60143)/Homer	NRCCGACDWNNNNNN	1e0	-1.028e+00	0.7018	597.0	2.99%	1341.1	2.93%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-1.008e+00	0.7142	1502.0	7.51%	3402.0	7.43%
GAGA-repeat/SacCer-Promoters/Homer	CTYTCTYTCTCTCTC	1e0	-9.746e-01	0.7371	6533.0	32.66%	14894.1	32.54%
ANAC020(NAC)/col-ANAC020-DAP-Seq(GSE60143)/Homer	DVCKTGHNNNDCAAG	1e0	-9.640e-01	0.7434	615.0	3.08%	1386.4	3.03%
MYB107(MYB)/col-MYB107-DAP-Seq(GSE60143)/Homer	RGTWGGTRRR	1e0	-9.600e-01	0.7447	2091.0	10.46%	4749.3	10.38%
bZIP69(bZIP)/col-bZIP69-DAP-Seq(GSE60143)/Homer	GACAGCTGKCAW	1e0	-9.575e-01	0.7451	173.0	0.86%	385.0	0.84%
TCP16(TCP)/colamp-TCP16-DAP-Seq(GSE60143)/Homer	GTGGDCCYNNNNNNN	1e0	-9.538e-01	0.7463	762.0	3.81%	1721.5	3.76%
WRKY17(WRKY)/colamp-WRKY17-DAP-Seq(GSE60143)/Homer	GCGTTGACTTTT	1e0	-9.413e-01	0.7541	9.0	0.04%	17.2	0.04%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-9.325e-01	0.7591	1396.0	6.98%	3167.5	6.92%
WIP5(C2H2)/colamp-WIP5-DAP-Seq(GSE60143)/Homer	TDTTCTCMAGGT	1e0	-9.276e-01	0.7612	1512.0	7.56%	3432.9	7.50%
AT1G10720(BSD)/col-AT1G10720-DAP-Seq(GSE60143)/Homer	TTCTAGAAKCTTCTA	1e0	-9.266e-01	0.7612	19.0	0.10%	39.5	0.09%
DEL1(E2FDP)/colamp-DEL1-DAP-Seq(GSE60143)/Homer	TTCCCGCCAA	1e0	-9.201e-01	0.7638	8.0	0.04%	15.2	0.03%
ASL18(LOBAS2)/colamp-ASL18-DAP-Seq(GSE60143)/Homer	CCGGAAAWTCMGGAR	1e0	-9.168e-01	0.7648	2345.0	11.72%	5334.3	11.65%
AtHB32(ZFHD)/col200-AtHB32-DAP-Seq(GSE60143)/Homer	CGAATTAT	1e0	-9.148e-01	0.7648	1557.0	7.79%	3537.0	7.73%
Adof1(C2C2dof)/col-Adof1-DAP-Seq(GSE60143)/Homer	NRWAAAGYDV	1e0	-9.114e-01	0.7657	4270.0	21.35%	9732.3	21.26%
Replumless(BLH)/Arabidopsis-RPL.GFP-ChIP-Seq(GSE78727)/Homer	HGTCWHATCA	1e0	-9.107e-01	0.7657	1655.0	8.28%	3760.9	8.22%
AS2(LOBAS2)/col-AS2-DAP-Seq(GSE60143)/Homer	CCGDAAWWHMCGSCG	1e0	-9.099e-01	0.7657	132.0	0.66%	293.5	0.64%
At1g19000(MYBrelated)/colamp-At1g19000-DAP-Seq(GSE60143)/Homer	WWTGGATAADDT	1e0	-9.064e-01	0.7657	1101.0	5.50%	2497.9	5.46%
Unknown4/Drosophila-Promoters/Homer	AAAAATACCRMA	1e0	-9.018e-01	0.7668	131.0	0.66%	292.0	0.64%
ANAC045(NAC)/col-ANAC045-DAP-Seq(GSE60143)/Homer	DNCKTVNNNNNNAMG	1e0	-8.986e-01	0.7676	2499.0	12.50%	5688.9	12.43%
HSF7(HSF)/colamp-HSF7-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e0	-8.984e-01	0.7676	180.0	0.90%	402.4	0.88%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-8.924e-01	0.7693	313.0	1.57%	704.9	1.54%
At5g52660(MYBrelated)/colamp-At5g52660-DAP-Seq(GSE60143)/Homer	HAAAAATATCTW	1e0	-8.840e-01	0.7742	483.0	2.42%	1091.1	2.38%
CRF10(AP2EREBP)/col100-CRF10-DAP-Seq(GSE60143)/Homer	DCCGCCGYHA	1e0	-8.700e-01	0.7835	1925.0	9.62%	4381.9	9.57%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-8.597e-01	0.7900	829.0	4.15%	1881.7	4.11%
ATHB40(HB)/col-ATHB40-DAP-Seq(GSE60143)/Homer	HCAATWATTG	1e0	-8.503e-01	0.7959	901.0	4.50%	2046.6	4.47%
DEL2(E2FDP)/col-DEL2-DAP-Seq(GSE60143)/Homer	WTTTCSCGCC	1e0	-8.494e-01	0.7959	547.0	2.73%	1239.4	2.71%
AT2G31460(REMB3)/col-AT2G31460-DAP-Seq(GSE60143)/Homer	WNWARWDGAAATGAT	1e0	-8.454e-01	0.7966	546.0	2.73%	1237.9	2.70%
AtIDD11(C2H2)/colamp-AtIDD11-DAP-Seq(GSE60143)/Homer	TTTGTCGTTT	1e0	-8.442e-01	0.7966	517.0	2.58%	1171.5	2.56%
SPL9(SBP)/colamp-SPL9-DAP-Seq(GSE60143)/Homer	BTGTACTT	1e0	-8.428e-01	0.7966	2609.0	13.05%	5947.9	12.99%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-8.401e-01	0.7966	296.0	1.48%	668.6	1.46%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-8.358e-01	0.7978	436.0	2.18%	987.2	2.16%
FRS9(ND)/col-FRS9-DAP-Seq(GSE60143)/Homer	RGAGAGAGAAAG	1e0	-8.358e-01	0.7978	400.0	2.00%	905.9	1.98%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e0	-8.197e-01	0.8075	1086.0	5.43%	2471.3	5.40%
REB1/SacCer-Promoters/Homer	KCCGGGTAAYRR	1e0	-7.959e-01	0.8254	187.0	0.94%	422.2	0.92%
VND1(NAC)/col-VND1-DAP-Seq(GSE60143)/Homer	CTTRWDNHWYAAGYW	1e0	-7.916e-01	0.8273	819.0	4.09%	1864.1	4.07%
At1g72010(TCP)/colamp-At1g72010-DAP-Seq(GSE60143)/Homer	GGDCCCAC	1e0	-7.807e-01	0.8347	657.0	3.28%	1495.5	3.27%
Unknown2/Arabidopsis-Promoters/Homer	AAACGACGTCGTTTT	1e0	-7.797e-01	0.8347	3.0	0.01%	5.1	0.01%
HDG1(Homeobox)/col100-HDG1-DAP-Seq(GSE60143)/Homer	DDYAATTAATGH	1e0	-7.787e-01	0.8347	547.0	2.73%	1244.4	2.72%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-7.638e-01	0.8439	603.0	3.02%	1373.4	3.00%
FHY3(FAR1)/Arabidopsis-FHY3-ChIP-Seq(GSE30711)/Homer	HHCACGCGCBTN	1e0	-7.607e-01	0.8449	419.0	2.10%	953.1	2.08%
PLT3(AP2EREBP)/col-PLT3-DAP-Seq(GSE60143)/Homer	GCACGNWTHYCGAGG	1e0	-7.522e-01	0.8504	55.0	0.27%	124.0	0.27%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-7.455e-01	0.8545	158.0	0.79%	358.5	0.78%
RVE1(MYBrelated)/col-RVE1-DAP-Seq(GSE60143)/Homer	AAATATCT	1e0	-7.366e-01	0.8604	627.0	3.14%	1430.4	3.12%
ANAC038(NAC)/col-ANAC038-DAP-Seq(GSE60143)/Homer	ACACGTWAYC	1e0	-7.264e-01	0.8676	2965.0	14.82%	6779.5	14.81%
MYB119(MYB)/colamp-MYB119-DAP-Seq(GSE60143)/Homer	YRACCGTTACDD	1e0	-7.172e-01	0.8739	381.0	1.91%	869.4	1.90%
At4g01280(MYBrelated)/colamp-At4g01280-DAP-Seq(GSE60143)/Homer	AAATATCT	1e0	-7.171e-01	0.8739	611.0	3.06%	1395.2	3.05%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-7.110e-01	0.8759	160.0	0.80%	365.0	0.80%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-7.049e-01	0.8796	795.0	3.98%	1817.3	3.97%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-6.945e-01	0.8870	1093.0	5.46%	2500.4	5.46%
SPL11(SBP)/col100-SPL11-DAP-Seq(GSE60143)/Homer	YTGTACTTBH	1e0	-6.764e-01	0.9015	796.0	3.98%	1822.5	3.98%
OBP3(C2C2dof)/col-OBP3-DAP-Seq(GSE60143)/Homer	NYWACTTTTT	1e0	-6.749e-01	0.9015	4927.0	24.64%	11279.8	24.64%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-6.719e-01	0.9021	1540.0	7.70%	3526.8	7.70%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e0	-6.689e-01	0.9031	164.0	0.82%	376.0	0.82%
SND3(NAC)/col-SND3-DAP-Seq(GSE60143)/Homer	CTTNHNNNDNAAGNH	1e0	-6.682e-01	0.9031	714.0	3.57%	1635.8	3.57%
AT1G28160(AP2EREBP)/colamp-AT1G28160-DAP-Seq(GSE60143)/Homer	GGCGGCGG	1e0	-6.505e-01	0.9164	2954.0	14.77%	6767.7	14.78%
At1g13300(G2like)/col-At1g13300-DAP-Seq(GSE60143)/Homer	GAATCTWAGATTCYN	1e0	-6.490e-01	0.9164	7.0	0.03%	15.2	0.03%
AT3G16280(AP2EREBP)/colamp-AT3G16280-DAP-Seq(GSE60143)/Homer	HCACCGACAHHDHHN	1e0	-6.441e-01	0.9187	262.0	1.31%	601.7	1.31%
PQM-1(?)/cElegans-L3-ChIP-Seq(modEncode)/Homer	ACTGATAAGA	1e0	-6.358e-01	0.9246	861.0	4.30%	1975.1	4.31%
AGL95(ND)/col-AGL95-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e0	-6.323e-01	0.9261	88.0	0.44%	202.3	0.44%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-6.310e-01	0.9261	661.0	3.31%	1517.4	3.31%
LBD18(LOBAS2)/colamp-LBD18-DAP-Seq(GSE60143)/Homer	CKGAWWTTCHGS	1e0	-6.245e-01	0.9299	3630.0	18.15%	8320.5	18.18%
HSFA6A(HSF)/col-HSFA6A-DAP-Seq(GSE60143)/Homer	RGAAGNTTCTAGAAN	1e0	-5.896e-01	0.9611	26.0	0.13%	60.3	0.13%
AT1G47655(C2C2dof)/colamp-AT1G47655-DAP-Seq(GSE60143)/Homer	YHACTTTTTS	1e0	-5.893e-01	0.9611	5502.0	27.51%	12615.9	27.56%
OBP4(C2C2dof)/col-OBP4-DAP-Seq(GSE60143)/Homer	WTTHACTTTTTB	1e0	-5.830e-01	0.9638	2157.0	10.79%	4953.5	10.82%
SeqBias: GA-repeat	GAGAGAGAGA	1e0	-5.591e-01	0.9853	11040.0	55.20%	25301.9	55.27%
SeqBias: TA-repeat	TATATATATA	1e0	-5.590e-01	0.9853	3775.0	18.88%	8666.2	18.93%
RAP26(AP2EREBP)/colamp-RAP26-DAP-Seq(GSE60143)/Homer	HDATGGCGGCGG	1e0	-5.572e-01	0.9853	1733.0	8.67%	3985.5	8.71%
MYB3(MYB)/Arabidopsis-MYB3-ChIP-Seq(GSE80564)/Homer	GKTAGGTRGG	1e0	-5.469e-01	0.9918	2265.0	11.33%	5207.6	11.38%
CCA(Myb)/Arabidopsis-CCA.GFP-ChIP-Seq(GSE70533)/Homer	AGATATYTTT	1e0	-5.456e-01	0.9918	898.0	4.49%	2070.2	4.52%
RAP21(AP2EREBP)/colamp-RAP21-DAP-Seq(GSE60143)/Homer	BCACCGACAHNN	1e0	-5.368e-01	0.9982	137.0	0.69%	319.5	0.70%
AT3G10580(MYBrelated)/colamp-AT3G10580-DAP-Seq(GSE60143)/Homer	TACCTAACWNHW	1e0	-5.264e-01	1.0000	408.0	2.04%	945.5	2.07%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-5.214e-01	1.0000	160.0	0.80%	373.4	0.82%
At2g33710(AP2EREBP)/colamp-At2g33710-DAP-Seq(GSE60143)/Homer	WTKGCGGCKR	1e0	-5.208e-01	1.0000	2609.0	13.05%	6001.4	13.11%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-5.207e-01	1.0000	100.0	0.50%	235.0	0.51%
SMB(NAC)/colamp-SMB-DAP-Seq(GSE60143)/Homer	CTTVNNNNDBAAGHW	1e0	-5.157e-01	1.0000	946.0	4.73%	2184.8	4.77%
At1g74840(MYBrelated)/col100-At1g74840-DAP-Seq(GSE60143)/Homer	YHTTATCCAWWT	1e0	-5.087e-01	1.0000	943.0	4.71%	2178.5	4.76%
At3g60580(C2H2)/col-At3g60580-DAP-Seq(GSE60143)/Homer	WTTYTACT	1e0	-5.040e-01	1.0000	8851.0	44.26%	20307.5	44.36%
At5g47390(MYBrelated)/col-At5g47390-DAP-Seq(GSE60143)/Homer	CTTATCCA	1e0	-4.929e-01	1.0000	1771.0	8.86%	4083.2	8.92%
AZF1(C2H2)/colamp-AZF1-DAP-Seq(GSE60143)/Homer	DKSWCACT	1e0	-4.927e-01	1.0000	9299.0	46.49%	21336.8	46.61%
CBF1(AP2EREBP)/colamp-CBF1-DAP-Seq(GSE60143)/Homer	YRCCGACATN	1e0	-4.924e-01	1.0000	641.0	3.21%	1485.7	3.25%
MYB74(MYB)/colamp-MYB74-DAP-Seq(GSE60143)/Homer	YYYACCTACCWH	1e0	-4.822e-01	1.0000	634.0	3.17%	1470.8	3.21%
AT3G10030(Trihelix)/colamp-AT3G10030-DAP-Seq(GSE60143)/Homer	GCCGTTAA	1e0	-4.664e-01	1.0000	697.0	3.48%	1617.5	3.53%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e0	-4.655e-01	1.0000	172.0	0.86%	404.7	0.88%
MYB88(MYB)/col-MYB88-DAP-Seq(GSE60143)/Homer	HNACGCTCCT	1e0	-4.603e-01	1.0000	3023.0	15.12%	6964.3	15.21%
At5g05790(MYBrelated)/col-At5g05790-DAP-Seq(GSE60143)/Homer	AYCTTATC	1e0	-4.540e-01	1.0000	1744.0	8.72%	4028.7	8.80%
GATA19(C2C2gata)/colamp-GATA19-DAP-Seq(GSE60143)/Homer	ATCSGATCVG	1e0	-4.386e-01	1.0000	66.0	0.33%	158.0	0.35%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-4.295e-01	1.0000	295.0	1.47%	692.9	1.51%
At5g08520(MYBrelated)/colamp-At5g08520-DAP-Seq(GSE60143)/Homer	ADBSTTATCY	1e0	-4.256e-01	1.0000	1796.0	8.98%	4153.5	9.07%
AT5G61620(MYBrelated)/colamp-AT5G61620-DAP-Seq(GSE60143)/Homer	CTTATCCA	1e0	-4.235e-01	1.0000	1995.0	9.98%	4611.3	10.07%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e0	-4.215e-01	1.0000	1117.0	5.58%	2591.9	5.66%
AT3G60490(AP2EREBP)/colamp-AT3G60490-DAP-Seq(GSE60143)/Homer	NNRCCGACANNNNNN	1e0	-4.162e-01	1.0000	245.0	1.23%	577.5	1.26%
VND6(NAC)/col-VND6-DAP-Seq(GSE60143)/Homer	DCTTNHTTTTYAMGY	1e0	-4.145e-01	1.0000	1133.0	5.67%	2629.2	5.74%
ERF73(AP2EREBP)/col-ERF73-DAP-Seq(GSE60143)/Homer	CCGCCGCC	1e0	-4.135e-01	1.0000	1195.0	5.97%	2772.5	6.06%
IDD7(C2H2)/col-IDD7-DAP-Seq(GSE60143)/Homer	TTTGTCKTTTTN	1e0	-4.123e-01	1.0000	537.0	2.69%	1254.8	2.74%
PUCHI(AP2EREBP)/colamp-PUCHI-DAP-Seq(GSE60143)/Homer	GCGCCGTY	1e0	-4.103e-01	1.0000	1236.0	6.18%	2867.1	6.26%
HSF6(HSF)/col-HSF6-DAP-Seq(GSE60143)/Homer	TTYTAGAAGCTTCTA	1e0	-4.088e-01	1.0000	234.0	1.17%	552.3	1.21%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-4.077e-01	1.0000	173.0	0.86%	410.4	0.90%
ANAC046(NAC)/colamp-ANAC046-DAP-Seq(GSE60143)/Homer	ACACGYWAYC	1e0	-4.061e-01	1.0000	2622.0	13.11%	6056.4	13.23%
LCL1(MYBrelated)/colamp-LCL1-DAP-Seq(GSE60143)/Homer	NAAAATATCTWHWWN	1e0	-3.922e-01	1.0000	158.0	0.79%	376.1	0.82%
MYB41(MYB)/col-MYB41-DAP-Seq(GSE60143)/Homer	BYTYACCTAA	1e0	-3.903e-01	1.0000	434.0	2.17%	1018.2	2.22%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-3.809e-01	1.0000	678.0	3.39%	1584.7	3.46%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-3.804e-01	1.0000	4187.0	20.94%	9657.5	21.10%
AT3G52440(C2C2dof)/colamp-AT3G52440-DAP-Seq(GSE60143)/Homer	DTHACTTTTT	1e0	-3.744e-01	1.0000	3593.0	17.96%	8295.8	18.12%
SOC1(MADS)/Seedling-SOC1-ChIP-Seq(GSE45846)/Homer	TWCCAWWTWTGG	1e0	-3.674e-01	1.0000	423.0	2.11%	995.6	2.17%
TOD6?/SacCer-Promoters/Homer	GCGATGAGMT	1e0	-3.627e-01	1.0000	205.0	1.03%	488.5	1.07%
CDF3(C2C2dof)/colamp-CDF3-DAP-Seq(GSE60143)/Homer	AAAAGTRM	1e0	-3.594e-01	1.0000	2743.0	13.71%	6346.2	13.86%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-3.565e-01	1.0000	180.0	0.90%	430.3	0.94%
At3g11280(MYBrelated)/col-At3g11280-DAP-Seq(GSE60143)/Homer	GATAAGRT	1e0	-3.540e-01	1.0000	1641.0	8.21%	3812.0	8.33%
ANAC083(NAC)/col-ANAC083-DAP-Seq(GSE60143)/Homer	CKTRWNNNWYAMGTA	1e0	-3.412e-01	1.0000	695.0	3.48%	1629.2	3.56%
HSFB4(HSF)/col-HSFB4-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e0	-3.398e-01	1.0000	28.0	0.14%	71.0	0.16%
NST1(NAC)/colamp-NST1-DAP-Seq(GSE60143)/Homer	WRCTTRWWNWWYAAG	1e0	-3.377e-01	1.0000	884.0	4.42%	2067.7	4.52%
MYB96(MYB)/colamp-MYB96-DAP-Seq(GSE60143)/Homer	WGGTRGTTGG	1e0	-3.350e-01	1.0000	1175.0	5.88%	2740.5	5.99%
VRN1(ABI3VP1)/col-VRN1-DAP-Seq(GSE60143)/Homer	TTTTTTTTTT	1e0	-3.286e-01	1.0000	400.0	2.00%	946.5	2.07%
dof43(C2C2dof)/colamp-dof43-DAP-Seq(GSE60143)/Homer	NAAAAAGTDA	1e0	-3.270e-01	1.0000	2216.0	11.08%	5142.6	11.23%
EIN3(EIL)/col-EIN3-DAP-Seq(GSE60143)/Homer	ARATTCAATGWATYT	1e0	-3.254e-01	1.0000	139.0	0.69%	336.8	0.74%
STOP1(C2H2)/colamp-STOP1-DAP-Seq(GSE60143)/Homer	DTATCTGGKGRAGGT	1e0	-3.224e-01	1.0000	533.0	2.67%	1256.5	2.74%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	-3.217e-01	1.0000	16.0	0.08%	42.8	0.09%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-3.195e-01	1.0000	20.0	0.10%	52.1	0.11%
VND3(NAC)/colamp-VND3-DAP-Seq(GSE60143)/Homer	TRCTTGWDNHWCAAG	1e0	-3.180e-01	1.0000	665.0	3.33%	1563.2	3.41%
AT2G38300(G2like)/col-AT2G38300-DAP-Seq(GSE60143)/Homer	ADRGAATGTT	1e0	-3.128e-01	1.0000	2016.0	10.08%	4685.9	10.24%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-3.073e-01	1.0000	264.0	1.32%	632.0	1.38%
GAGA-repeat/Arabidopsis-Promoters/Homer	CTCTCTCTCY	1e0	-3.068e-01	1.0000	1697.0	8.48%	3951.8	8.63%
DEAR3(AP2EREBP)/colamp-DEAR3-DAP-Seq(GSE60143)/Homer	BCACCGACAWNNNNN	1e0	-3.058e-01	1.0000	246.0	1.23%	589.2	1.29%
HSF3(HSF)/colamp-HSF3-DAP-Seq(GSE60143)/Homer	NTTCTAGAAKCTTCT	1e0	-2.985e-01	1.0000	919.0	4.59%	2155.1	4.71%
BBX31(Orphan)/col-BBX31-DAP-Seq(GSE60143)/Homer	NAAAAAGTDA	1e0	-2.965e-01	1.0000	2386.0	11.93%	5542.4	12.11%
LHY(Myb)/Seedling-LHY-ChIP-Seq(GSE52175)/Homer	ADAAATATCT	1e0	-2.953e-01	1.0000	1114.0	5.57%	2607.8	5.70%
IDD4(C2H2)/col-IDD4-DAP-Seq(GSE60143)/Homer	TTTGTCTTTWTB	1e0	-2.950e-01	1.0000	1351.0	6.75%	3155.1	6.89%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e0	-2.853e-01	1.0000	624.0	3.12%	1473.2	3.22%
FAR1(FAR1)/col-FAR1-DAP-Seq(GSE60143)/Homer	TKNNNYYCACGCGCY	1e0	-2.852e-01	1.0000	120.0	0.60%	294.5	0.64%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-2.843e-01	1.0000	257.0	1.29%	617.8	1.35%
SVP(MADS)/col-SVP-DAP-Seq(GSE60143)/Homer	ANTTWCCHAATTTGG	1e0	-2.835e-01	1.0000	620.0	3.10%	1464.8	3.20%
ERF105(AP2EREBP)/colamp-ERF105-DAP-Seq(GSE60143)/Homer	TGGCGGCT	1e0	-2.832e-01	1.0000	2222.0	11.11%	5169.0	11.29%
At5g22890(C2H2)/col-At5g22890-DAP-Seq(GSE60143)/Homer	NSAGGTKWTATCTGD	1e0	-2.804e-01	1.0000	30.0	0.15%	78.7	0.17%
PLT1(AP2EREBP)/colamp-PLT1-DAP-Seq(GSE60143)/Homer	GCACGAWTYCCGAGG	1e0	-2.739e-01	1.0000	84.0	0.42%	209.1	0.46%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	-2.678e-01	1.0000	4.0	0.02%	12.1	0.03%
WRKY7(WRKY)/colamp-WRKY7-DAP-Seq(GSE60143)/Homer	AAAAGTCAACGSHWD	1e0	-2.673e-01	1.0000	1.0	0.01%	3.3	0.01%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-2.626e-01	1.0000	13.0	0.07%	37.0	0.08%
AT5G66940(C2C2dof)/col-AT5G66940-DAP-Seq(GSE60143)/Homer	NNHACTTTWT	1e0	-2.604e-01	1.0000	2994.0	14.97%	6954.8	15.19%
MYB93(MYB)/colamp-MYB93-DAP-Seq(GSE60143)/Homer	GGTAGGTGRD	1e0	-2.582e-01	1.0000	1425.0	7.12%	3335.7	7.29%
MYB94(MYB)/col-MYB94-DAP-Seq(GSE60143)/Homer	WGGTRGTTGGKA	1e0	-2.539e-01	1.0000	490.0	2.45%	1166.2	2.55%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e0	-2.502e-01	1.0000	266.0	1.33%	642.7	1.40%
AT2G01818(PLATZ)/col-AT2G01818-DAP-Seq(GSE60143)/Homer	TCTAGAABSTTC	1e0	-2.477e-01	1.0000	115.0	0.57%	285.9	0.62%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e0	-2.460e-01	1.0000	1114.0	5.57%	2618.2	5.72%
HSFA1E(HSF)/col-HSFA1E-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e0	-2.422e-01	1.0000	55.0	0.27%	141.4	0.31%
REM19(REM)/colamp-REM19-DAP-Seq(GSE60143)/Homer	AAAAAAAA	1e0	-2.398e-01	1.0000	1006.0	5.03%	2369.1	5.18%
AT3G51470(DBP)/col-AT3G51470-DAP-Seq(GSE60143)/Homer	TTWHGGTGCACC	1e0	-2.388e-01	1.0000	1741.0	8.71%	4071.5	8.89%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-2.370e-01	1.0000	2900.0	14.50%	6747.0	14.74%
MYB83(MYB)/colamp-MYB83-DAP-Seq(GSE60143)/Homer	CACCAACCWH	1e0	-2.343e-01	1.0000	2117.0	10.59%	4941.3	10.79%
AT5G63260(C3H)/col-AT5G63260-DAP-Seq(GSE60143)/Homer	RAAAAAGTRA	1e0	-2.330e-01	1.0000	3707.0	18.54%	8606.2	18.80%
Unknown3/Arabidopsis-Promoters/Homer	AYTAAACCGG	1e0	-2.327e-01	1.0000	156.0	0.78%	384.2	0.84%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-2.311e-01	1.0000	65.0	0.33%	166.2	0.36%
AT5G59990(C2C2COlike)/colamp-AT5G59990-DAP-Seq(GSE60143)/Homer	TCTCAACCGTTCATT	1e0	-2.291e-01	1.0000	20.0	0.10%	55.3	0.12%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-2.205e-01	1.0000	2270.0	11.35%	5299.5	11.58%
AT3G09735(S1Falike)/col-AT3G09735-DAP-Seq(GSE60143)/Homer	TTCTAGAANMTTCTA	1e0	-2.094e-01	1.0000	341.0	1.70%	824.6	1.80%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e0	-1.994e-01	1.0000	1407.0	7.03%	3310.2	7.23%
ERF2(AP2EREBP)/colamp-ERF2-DAP-Seq(GSE60143)/Homer	GGCGGCTG	1e0	-1.935e-01	1.0000	1245.0	6.22%	2936.4	6.41%
SeqBias: A/T bias	WWWWWWWWWW	1e0	-1.933e-01	1.0000	14639.0	73.19%	33663.1	73.54%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-1.926e-01	1.0000	1611.0	8.05%	3785.9	8.27%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-1.899e-01	1.0000	349.0	1.75%	846.6	1.85%
TRP2(MYBrelated)/colamp-TRP2-DAP-Seq(GSE60143)/Homer	TAAACCCT	1e0	-1.858e-01	1.0000	161.0	0.80%	401.9	0.88%
BPC6(BBRBPC)/col-BPC6-DAP-Seq(GSE60143)/Homer	YTYTCTCTCTCTCTA	1e0	-1.834e-01	1.0000	49.0	0.24%	130.7	0.29%
OBP1(C2C2dof)/col-OBP1-DAP-Seq(GSE60143)/Homer	NHHACTTTWT	1e0	-1.831e-01	1.0000	4312.0	21.56%	10022.6	21.90%
dof42(C2C2dof)/col-dof42-DAP-Seq(GSE60143)/Homer	AAAAAGGC	1e0	-1.695e-01	1.0000	859.0	4.29%	2045.5	4.47%
WRKY46(WRKY)/colamp-WRKY46-DAP-Seq(GSE60143)/Homer	AAAGTCAACGSN	1e0	-1.677e-01	1.0000	70.0	0.35%	183.2	0.40%
AT2G20400(G2like)/colamp-AT2G20400-DAP-Seq(GSE60143)/Homer	DNVGAATATTCBNHN	1e0	-1.668e-01	1.0000	104.0	0.52%	266.8	0.58%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	-1.661e-01	1.0000	3.0	0.01%	11.8	0.03%
EGL-5(Homeobox)/cElegans-L3-EGL5-ChIP-Seq(modEncode)/Homer	ATTTAATGGG	1e0	-1.659e-01	1.0000	1829.0	9.14%	4300.7	9.40%
TCP7(TCP)/col-TCP7-DAP-Seq(GSE60143)/Homer	GTGGGSCCCACHHNN	1e0	-1.579e-01	1.0000	689.0	3.45%	1651.2	3.61%
MYB17(MYB)/colamp-MYB17-DAP-Seq(GSE60143)/Homer	GGTAGGTGRG	1e0	-1.560e-01	1.0000	632.0	3.16%	1518.7	3.32%
ERF115(AP2EREBP)/colamp-ERF115-DAP-Seq(GSE60143)/Homer	WTKRCGGCGB	1e0	-1.544e-01	1.0000	2222.0	11.11%	5215.2	11.39%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-1.478e-01	1.0000	166.0	0.83%	418.5	0.91%
RLR1?/SacCer-Promoters/Homer	WTTTTCYYTTTT	1e0	-1.446e-01	1.0000	914.0	4.57%	2181.7	4.77%
SeqBias: polyC-repeat	CCCCCCCCCC	1e0	-1.387e-01	1.0000	19424.0	97.12%	44527.4	97.27%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-1.341e-01	1.0000	2374.0	11.87%	5577.5	12.18%
ELT-3(Gata)/cElegans-L1-ELT3-ChIP-Seq(modEncode)/Homer	AWTGATAAGA	1e0	-1.340e-01	1.0000	856.0	4.28%	2050.0	4.48%
AT5G56840(MYBrelated)/colamp-AT5G56840-DAP-Seq(GSE60143)/Homer	TGGATAAGGT	1e0	-1.318e-01	1.0000	1813.0	9.06%	4278.7	9.35%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e0	-1.263e-01	1.0000	1382.0	6.91%	3280.0	7.17%
At4g38000(C2C2dof)/col-At4g38000-DAP-Seq(GSE60143)/Homer	WWWTWACTTTTT	1e0	-1.260e-01	1.0000	1649.0	8.24%	3900.8	8.52%
ESE1(AP2EREBP)/col-ESE1-DAP-Seq(GSE60143)/Homer	GGCGGCGG	1e0	-1.216e-01	1.0000	1333.0	6.67%	3167.6	6.92%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e0	-1.215e-01	1.0000	1987.0	9.93%	4687.8	10.24%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-1.210e-01	1.0000	2190.0	10.95%	5158.7	11.27%
AGL6(MADS)/col-AGL6-DAP-Seq(GSE60143)/Homer	TTWCCWWAWWDGGWA	1e0	-1.206e-01	1.0000	123.0	0.61%	318.4	0.70%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-1.194e-01	1.0000	172.0	0.86%	437.0	0.95%
AT3G12130(C3H)/colamp-AT3G12130-DAP-Seq(GSE60143)/Homer	TMACTTTTTV	1e0	-1.176e-01	1.0000	3743.0	18.71%	8751.2	19.12%
STZ(C2H2)/colamp-STZ-DAP-Seq(GSE60143)/Homer	HNBTCACT	1e0	-1.128e-01	1.0000	10169.0	50.84%	23514.2	51.37%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e0	-1.128e-01	1.0000	336.0	1.68%	831.1	1.82%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-1.112e-01	1.0000	113.0	0.56%	295.3	0.65%
At1g69690(TCP)/colamp-At1g69690-DAP-Seq(GSE60143)/Homer	NHGTGGGGCCCACHW	1e0	-1.079e-01	1.0000	263.0	1.31%	658.6	1.44%
MYB40(MYB)/col-MYB40-DAP-Seq(GSE60143)/Homer	TGGTAGGTRARA	1e0	-1.076e-01	1.0000	343.0	1.71%	849.6	1.86%
At2g41835(C2H2)/col-At2g41835-DAP-Seq(GSE60143)/Homer	TTTGAAAA	1e0	-1.060e-01	1.0000	671.0	3.36%	1625.3	3.55%
Unknown2/Drosophila-Promoters/Homer	CATCMCTA	1e0	-1.059e-01	1.0000	1663.0	8.31%	3944.0	8.62%
At3g09600(MYBrelated)/colamp-At3g09600-DAP-Seq(GSE60143)/Homer	AAAATATCTT	1e0	-9.855e-02	1.0000	464.0	2.32%	1139.3	2.49%
DAG2(C2C2dof)/col-DAG2-DAP-Seq(GSE60143)/Homer	WWTTHACTTTTT	1e0	-9.846e-02	1.0000	2523.0	12.62%	5944.5	12.99%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-9.276e-02	1.0000	126.0	0.63%	331.0	0.72%
HDG7(HB)/col-HDG7-DAP-Seq(GSE60143)/Homer	WGCATTTAATGC	1e0	-8.942e-02	1.0000	156.0	0.78%	404.1	0.88%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	-8.757e-02	1.0000	478.0	2.39%	1176.4	2.57%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-8.729e-02	1.0000	178.0	0.89%	458.8	1.00%
ERF104(AP2EREBP)/col-ERF104-DAP-Seq(GSE60143)/Homer	GGCGGCGG	1e0	-8.486e-02	1.0000	1688.0	8.44%	4014.3	8.77%
HAT5(Homeobox)/colamp-HAT5-DAP-Seq(GSE60143)/Homer	DCAATWATTG	1e0	-8.338e-02	1.0000	144.0	0.72%	376.2	0.82%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-8.180e-02	1.0000	2769.0	13.84%	6527.7	14.26%
At5g29000(G2like)/col-At5g29000-DAP-Seq(GSE60143)/Homer	RGAATATTCYHH	1e0	-8.160e-02	1.0000	234.0	1.17%	595.3	1.30%
SPL5(SBP)/colamp-SPL5-DAP-Seq(GSE60143)/Homer	NNHGTACGGHNN	1e0	-8.078e-02	1.0000	305.0	1.52%	766.0	1.67%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-7.292e-02	1.0000	782.0	3.91%	1901.9	4.15%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-7.156e-02	1.0000	1272.0	6.36%	3052.5	6.67%
At1g14580(C2H2)/colamp-At1g14580-DAP-Seq(GSE60143)/Homer	CASAAAAMGACAAAA	1e0	-7.059e-02	1.0000	231.0	1.16%	591.9	1.29%
BOS1(MYB)/col-BOS1-DAP-Seq(GSE60143)/Homer	NNRCCTAACT	1e0	-6.951e-02	1.0000	1090.0	5.45%	2627.4	5.74%
Rap210(AP2EREBP)/col-Rap210-DAP-Seq(GSE60143)/Homer	TGTCGGCA	1e0	-6.921e-02	1.0000	522.0	2.61%	1288.8	2.82%
HAP3(CCAATHAP3)/col-HAP3-DAP-Seq(GSE60143)/Homer	TGATGGAW	1e0	-6.909e-02	1.0000	330.0	1.65%	830.4	1.81%
MYB61(MYB)/colamp-MYB61-DAP-Seq(GSE60143)/Homer	HCYACCTACC	1e0	-6.670e-02	1.0000	1753.0	8.77%	4179.9	9.13%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	-6.549e-02	1.0000	1762.0	8.81%	4201.1	9.18%
bHLH28(bHLH)/col-bHLH28-DAP-Seq(GSE60143)/Homer	NHHTGTACGGAH	1e0	-6.418e-02	1.0000	160.0	0.80%	420.5	0.92%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-6.228e-02	1.0000	658.0	3.29%	1614.7	3.53%
AT1G20910(ARID)/col-AT1G20910-DAP-Seq(GSE60143)/Homer	THAATTRAWN	1e0	-6.205e-02	1.0000	1708.0	8.54%	4078.4	8.91%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-6.147e-02	1.0000	238.0	1.19%	611.2	1.34%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-6.120e-02	1.0000	5563.0	27.82%	13003.4	28.41%
MYB77(MYB)/col-MYB77-DAP-Seq(GSE60143)/Homer	NYAACBGYMC	1e0	-6.069e-02	1.0000	1873.0	9.37%	4464.1	9.75%
IDD5(C2H2)/colamp-IDD5-DAP-Seq(GSE60143)/Homer	TTTTGTCTTTTTBTK	1e0	-5.855e-02	1.0000	994.0	4.97%	2409.6	5.26%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e0	-5.574e-02	1.0000	376.0	1.88%	946.5	2.07%
MYB3R5(MYB)/col-MYB3R5-DAP-Seq(GSE60143)/Homer	THYAACGGTHAWAWT	1e0	-5.561e-02	1.0000	72.0	0.36%	203.3	0.44%
AIL7(AP2EREBP)/colamp-AIL7-DAP-Seq(GSE60143)/Homer	KCACRAWTYYCGAGG	1e0	-5.511e-02	1.0000	485.0	2.43%	1207.2	2.64%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-5.439e-02	1.0000	1681.0	8.40%	4022.4	8.79%
Zelda(Zf)/Embryo-zld-ChIP-Seq(GSE65441)/Homer	KBCTACCTGW	1e0	-5.281e-02	1.0000	400.0	2.00%	1005.7	2.20%
bHLH122(bHLH)/col100-bHLH122-DAP-Seq(GSE60143)/Homer	NDDCAASTTGHHNWW	1e0	-5.157e-02	1.0000	951.0	4.75%	2313.0	5.05%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e0	-5.078e-02	1.0000	802.0	4.01%	1962.4	4.29%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e0	-4.897e-02	1.0000	193.0	0.97%	506.9	1.11%
At4g18890(BZR)/col-At4g18890-DAP-Seq(GSE60143)/Homer	NDBRCACGTGYR	1e0	-4.872e-02	1.0000	195.0	0.97%	511.9	1.12%
HSFA6B(HSF)/colamp-HSFA6B-DAP-Seq(GSE60143)/Homer	NTTCTAGAANHTTCT	1e0	-4.759e-02	1.0000	413.0	2.07%	1039.7	2.27%
ZIM(C2C2gata)/col-ZIM-DAP-Seq(GSE60143)/Homer	ATCSRACGGTYRAGA	1e0	-4.726e-02	1.0000	6.0	0.03%	26.5	0.06%
BZR1(BZR)/col-BZR1-DAP-Seq(GSE60143)/Homer	NNCRCACGTGCG	1e0	-4.607e-02	1.0000	105.0	0.53%	289.9	0.63%
MYB13(MYB)/col-MYB13-DAP-Seq(GSE60143)/Homer	HYCACCWACCHH	1e0	-4.475e-02	1.0000	792.0	3.96%	1943.6	4.25%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-4.380e-02	1.0000	698.0	3.49%	1721.9	3.76%
MYB56(MYB)/colamp-MYB56-DAP-Seq(GSE60143)/Homer	HTAACGRMHY	1e0	-4.347e-02	1.0000	985.0	4.92%	2400.1	5.24%
AGL13(MADS)/col-AGL13-DAP-Seq(GSE60143)/Homer	TWCCAWWTWTGGWAA	1e0	-4.299e-02	1.0000	53.0	0.27%	157.8	0.34%
MYB81(MYB)/col-MYB81-DAP-Seq(GSE60143)/Homer	NWAACSGWTWNN	1e0	-4.157e-02	1.0000	2114.0	10.57%	5047.1	11.03%
MYB92(MYB)/colamp-MYB92-DAP-Seq(GSE60143)/Homer	GGTAGGTR	1e0	-4.123e-02	1.0000	1094.0	5.47%	2659.8	5.81%
MYB30(MYB)/colamp-MYB30-DAP-Seq(GSE60143)/Homer	AGGTAGTTGG	1e0	-4.057e-02	1.0000	1363.0	6.82%	3292.2	7.19%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-3.993e-02	1.0000	103.0	0.52%	286.3	0.63%
dof45(C2C2dof)/col-dof45-DAP-Seq(GSE60143)/Homer	NVAWAAAGTN	1e0	-3.740e-02	1.0000	3803.0	19.02%	8977.5	19.61%
ARF2(ARF)/col-ARF2-DAP-Seq(GSE60143)/Homer	TTGTCGGMWN	1e0	-3.695e-02	1.0000	3997.0	19.98%	9427.9	20.60%
FUS3(ABI3VP1)/col-FUS3-DAP-Seq(GSE60143)/Homer	DNNWTNTGCATGKNN	1e0	-3.614e-02	1.0000	1231.0	6.16%	2987.7	6.53%
AT5G22990(C2H2)/col-AT5G22990-DAP-Seq(GSE60143)/Homer	WCGAHDTCGWHN	1e0	-3.446e-02	1.0000	36.0	0.18%	114.9	0.25%
Unknown1/Arabidopsis-Promoters/Homer	RGGGTAWWWTHGTAA	1e0	-3.242e-02	1.0000	85.0	0.43%	243.1	0.53%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-3.205e-02	1.0000	1259.0	6.30%	3058.8	6.68%
ANAC017(NAC)/colamp-ANAC017-DAP-Seq(GSE60143)/Homer	TMCTTGNNNNNCAAG	1e0	-3.173e-02	1.0000	81.0	0.40%	233.4	0.51%
AT1G69570(C2C2dof)/col-AT1G69570-DAP-Seq(GSE60143)/Homer	WAAAAGTGHH	1e0	-3.154e-02	1.0000	1706.0	8.53%	4108.9	8.98%
GATA6(C2C2gata)/col200-GATA6-DAP-Seq(GSE60143)/Homer	TAGATCTARAHH	1e0	-3.099e-02	1.0000	84.0	0.42%	241.2	0.53%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-2.888e-02	1.0000	815.0	4.08%	2013.8	4.40%
MYB49(MYB)/col-MYB49-DAP-Seq(GSE60143)/Homer	ARKTAGGTRR	1e0	-2.854e-02	1.0000	1150.0	5.75%	2806.3	6.13%
ERF38(AP2EREBP)/col-ERF38-DAP-Seq(GSE60143)/Homer	CACCGACA	1e0	-2.813e-02	1.0000	392.0	1.96%	1002.6	2.19%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-2.701e-02	1.0000	433.0	2.17%	1102.0	2.41%
At3g45610(C2C2dof)/col-At3g45610-DAP-Seq(GSE60143)/Homer	TWACTTTTTS	1e0	-2.660e-02	1.0000	2311.0	11.55%	5531.3	12.08%
VIP1(bZIP)/col-VIP1-DAP-Seq(GSE60143)/Homer	NTTGACAGCTGTCAN	1e0	-2.548e-02	1.0000	227.0	1.14%	603.0	1.32%
MYB55(MYB)/colamp-MYB55-DAP-Seq(GSE60143)/Homer	YACCWAMC	1e0	-2.510e-02	1.0000	1183.0	5.92%	2889.0	6.31%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-2.290e-02	1.0000	2192.0	10.96%	5261.9	11.50%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e0	-2.205e-02	1.0000	1144.0	5.72%	2802.7	6.12%
dof24(C2C2dof)/col-dof24-DAP-Seq(GSE60143)/Homer	TWMCTTTTTG	1e0	-2.060e-02	1.0000	2979.0	14.89%	7102.6	15.52%
bHLH130(bHLH)/col-bHLH130-DAP-Seq(GSE60143)/Homer	GCAACTTG	1e0	-2.053e-02	1.0000	819.0	4.09%	2034.2	4.44%
GEI-11(Myb?)/cElegans-L4-GEI11-ChIP-Seq(modEncode)/Homer	CCGACAYYTYACGGG	1e0	-1.952e-02	1.0000	53.0	0.27%	165.2	0.36%
GT1(Trihelix)/col-GT1-DAP-Seq(GSE60143)/Homer	TTAACCATGGTTAAD	1e0	-1.926e-02	1.0000	6.0	0.03%	30.9	0.07%
ANAC079(NAC)/colamp-ANAC079-DAP-Seq(GSE60143)/Homer	TACACGCAACCT	1e0	-1.871e-02	1.0000	409.0	2.04%	1053.7	2.30%
Tal1	CATCTG	1e0	-1.851e-02	1.0000	2110.0	10.55%	5080.5	11.10%
bHLH80(bHLH)/col-bHLH80-DAP-Seq(GSE60143)/Homer	NNNNDCAASTTGHNN	1e0	-1.850e-02	1.0000	1112.0	5.56%	2733.2	5.97%
MYB116(MYB)/colamp-MYB116-DAP-Seq(GSE60143)/Homer	AGTTAGGCAN	1e0	-1.787e-02	1.0000	776.0	3.88%	1936.5	4.23%
ANAC070(NAC)/colamp-ANAC070-DAP-Seq(GSE60143)/Homer	CTTRHDNHNBAAGHW	1e0	-1.715e-02	1.0000	1137.0	5.68%	2795.8	6.11%
HSFB3(HSF)/colamp-HSFB3-DAP-Seq(GSE60143)/Homer	TTCTAGAAGMTTHTW	1e0	-1.693e-02	1.0000	5.0	0.03%	27.2	0.06%
At1g49010(MYBrelated)/col-At1g49010-DAP-Seq(GSE60143)/Homer	RGATAASNTT	1e0	-1.669e-02	1.0000	2885.0	14.42%	6895.5	15.06%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-1.668e-02	1.0000	1263.0	6.31%	3094.2	6.76%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-1.589e-02	1.0000	1313.0	6.57%	3214.2	7.02%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-1.545e-02	1.0000	192.0	0.96%	524.3	1.15%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-1.535e-02	1.0000	1479.0	7.40%	3607.8	7.88%
AT1G77200(AP2EREBP)/colamp-AT1G77200-DAP-Seq(GSE60143)/Homer	ACCGACAHWD	1e0	-1.532e-02	1.0000	662.0	3.31%	1668.0	3.64%
AGL16(MADS)/col-AGL16-DAP-Seq(GSE60143)/Homer	TWCCHWATWDGGAAA	1e0	-1.510e-02	1.0000	88.0	0.44%	260.2	0.57%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-1.491e-02	1.0000	2602.0	13.01%	6242.0	13.64%
AT1G12630(AP2EREBP)/colamp-AT1G12630-DAP-Seq(GSE60143)/Homer	TGTCGGCA	1e0	-1.329e-02	1.0000	458.0	2.29%	1180.8	2.58%
AT4G27900(C2C2COlike)/col-AT4G27900-DAP-Seq(GSE60143)/Homer	TCTCVACCGTTSATT	1e0	-1.299e-02	1.0000	1.0	0.01%	11.3	0.02%
JGL(C2H2)/col-JGL-DAP-Seq(GSE60143)/Homer	ACYTTCAGTT	1e0	-1.279e-02	1.0000	2377.0	11.88%	5723.3	12.50%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-1.277e-02	1.0000	689.0	3.45%	1738.9	3.80%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e0	-1.264e-02	1.0000	1360.0	6.80%	3334.0	7.28%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-1.182e-02	1.0000	2925.0	14.62%	7007.2	15.31%
KAN2(G2like)/colamp-KAN2-DAP-Seq(GSE60143)/Homer	ATATTCTY	1e0	-1.155e-02	1.0000	1781.0	8.91%	4330.6	9.46%
MYB65(MYB)/colamp-MYB65-DAP-Seq(GSE60143)/Homer	RACNGTTA	1e0	-1.146e-02	1.0000	1577.0	7.89%	3850.0	8.41%
COG1(C2C2dof)/col-COG1-DAP-Seq(GSE60143)/Homer	DAAAAAGTGA	1e0	-1.133e-02	1.0000	2126.0	10.63%	5141.1	11.23%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	-1.074e-02	1.0000	3.0	0.01%	21.4	0.05%
MYB4(MYB)/col200-MYB4-DAP-Seq(GSE60143)/Homer	WAGKTAGGTARR	1e0	-1.001e-02	1.0000	560.0	2.80%	1434.4	3.13%
AT4G26030(C2H2)/col-AT4G26030-DAP-Seq(GSE60143)/Homer	BYYACCWACY	1e0	-9.737e-03	1.0000	1059.0	5.29%	2630.2	5.75%
CDM1(C3H)/colamp-CDM1-DAP-Seq(GSE60143)/Homer	CCGAWAWTWTCGGAN	1e0	-8.999e-03	1.0000	50.0	0.25%	164.8	0.36%
ANAC071(NAC)/col-ANAC071-DAP-Seq(GSE60143)/Homer	DNCKTNDNNNHNAAG	1e0	-8.862e-03	1.0000	788.0	3.94%	1986.6	4.34%
PTF1(TCP)/colamp-PTF1-DAP-Seq(GSE60143)/Homer	RDDGGGACCACA	1e0	-8.537e-03	1.0000	69.0	0.34%	216.5	0.47%
At5g18450(AP2EREBP)/col-At5g18450-DAP-Seq(GSE60143)/Homer	CACCGCTT	1e0	-8.248e-03	1.0000	2359.0	11.79%	5702.5	12.46%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-7.711e-03	1.0000	604.0	3.02%	1547.7	3.38%
AGL25(MADS)/colamp-AGL25-DAP-Seq(GSE60143)/Homer	TTTCCATWTWTGGAA	1e0	-7.369e-03	1.0000	53.0	0.27%	174.4	0.38%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-7.294e-03	1.0000	127.0	0.64%	370.0	0.81%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	-6.952e-03	1.0000	909.0	4.54%	2283.8	4.99%
HSF21(HSF)/col-HSF21-DAP-Seq(GSE60143)/Homer	CTTCTAGAAGMTTYW	1e0	-6.827e-03	1.0000	9.0	0.04%	45.3	0.10%
AGL15(MADS)/col-AGL15-DAP-Seq(GSE60143)/Homer	TTTCCHWATWDGGAA	1e0	-6.642e-03	1.0000	144.0	0.72%	415.2	0.91%
KANADI1(Myb)/Seedling-KAN1-ChIP-Seq(GSE48081)/Homer	ARGAATAWWN	1e0	-6.442e-03	1.0000	1215.0	6.08%	3015.3	6.59%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-5.966e-03	1.0000	371.0	1.85%	985.6	2.15%
bZIP52(bZIP)/colamp-bZIP52-DAP-Seq(GSE60143)/Homer	NDNHCAGCTGTCANN	1e0	-5.873e-03	1.0000	1814.0	9.07%	4436.8	9.69%
MYB39(MYB)/col-MYB39-DAP-Seq(GSE60143)/Homer	WWAARKTAGGTGRAA	1e0	-5.464e-03	1.0000	116.0	0.58%	345.2	0.75%
MYB73(MYB)/col-MYB73-DAP-Seq(GSE60143)/Homer	NNNNHAACNGHHDHN	1e0	-5.070e-03	1.0000	2857.0	14.29%	6891.2	15.05%
SeqBias: CA-repeat	CACACACACA	1e0	-4.818e-03	1.0000	8320.0	41.60%	19538.0	42.68%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e0	-4.758e-03	1.0000	2270.0	11.35%	5518.7	12.06%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e0	-4.657e-03	1.0000	421.0	2.10%	1113.1	2.43%
At5g58900(MYBrelated)/colamp-At5g58900-DAP-Seq(GSE60143)/Homer	WWWTYTTATCTWWWW	1e0	-4.575e-03	1.0000	2331.0	11.65%	5663.9	12.37%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e0	-4.039e-03	1.0000	1784.0	8.92%	4380.4	9.57%
LEP(AP2EREBP)/col-LEP-DAP-Seq(GSE60143)/Homer	CDCCGCCGTC	1e0	-3.750e-03	1.0000	495.0	2.48%	1299.5	2.84%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-3.111e-03	1.0000	112.0	0.56%	341.4	0.75%
Unknown4/Arabidopsis-Promoters/Homer	CKTCKTCTTY	1e0	-3.110e-03	1.0000	1038.0	5.19%	2616.0	5.71%
MYB99(MYB)/colamp-MYB99-DAP-Seq(GSE60143)/Homer	GGTAGGTG	1e0	-3.108e-03	1.0000	960.0	4.80%	2429.1	5.31%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-2.995e-03	1.0000	65.0	0.33%	215.1	0.47%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-2.867e-03	1.0000	352.0	1.76%	952.6	2.08%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-2.782e-03	1.0000	6.0	0.03%	38.1	0.08%
TSO1(CPP)/col-TSO1-DAP-Seq(GSE60143)/Homer	RAATTTRAAW	1e0	-2.565e-03	1.0000	118.0	0.59%	359.8	0.79%
SGR5(C2H2)/colamp-SGR5-DAP-Seq(GSE60143)/Homer	TTTGTCTTTTTT	1e0	-2.234e-03	1.0000	932.0	4.66%	2371.3	5.18%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-2.200e-03	1.0000	3906.0	19.53%	9381.7	20.49%
AT1G19040(NAC)/col-AT1G19040-DAP-Seq(GSE60143)/Homer	CTTGNDNHNCAAGYW	1e0	-2.188e-03	1.0000	64.0	0.32%	215.2	0.47%
DDF2(AP2EREBP)/col-DDF2-DAP-Seq(GSE60143)/Homer	GATGTCGRCR	1e0	-2.063e-03	1.0000	15.0	0.07%	71.1	0.16%
E-box/Drosophila-Promoters/Homer	AACAGCTGTTHN	1e0	-2.049e-03	1.0000	300.0	1.50%	828.2	1.81%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e0	-2.034e-03	1.0000	4926.0	24.63%	11757.1	25.68%
At5g04390(C2H2)/col200-At5g04390-DAP-Seq(GSE60143)/Homer	AGTGANDN	1e0	-1.957e-03	1.0000	9849.0	49.24%	23100.8	50.47%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-1.727e-03	1.0000	1640.0	8.20%	4070.6	8.89%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-1.577e-03	1.0000	454.0	2.27%	1216.1	2.66%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-1.506e-03	1.0000	1378.0	6.89%	3451.4	7.54%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-1.506e-03	1.0000	298.0	1.49%	828.2	1.81%
MYB113(MYB)/col-MYB113-DAP-Seq(GSE60143)/Homer	HNDAWTCMGTTAYWN	1e0	-1.360e-03	1.0000	638.0	3.19%	1671.9	3.65%
MYB70(MYB)/col-MYB70-DAP-Seq(GSE60143)/Homer	WTAACNGTTA	1e0	-1.321e-03	1.0000	2141.0	10.71%	5266.4	11.50%
ANL2(HB)/col-ANL2-DAP-Seq(GSE60143)/Homer	CATTAATTGC	1e0	-1.289e-03	1.0000	486.0	2.43%	1299.8	2.84%
DREF/Drosophila-Promoters/Homer	AVYTATCGATAD	1e0	-1.272e-03	1.0000	5.0	0.03%	37.5	0.08%
AT1G76870(Trihelix)/col-AT1G76870-DAP-Seq(GSE60143)/Homer	AAAACCRGWW	1e0	-1.247e-03	1.0000	455.0	2.27%	1223.9	2.67%
MYB67(MYB)/col-MYB67-DAP-Seq(GSE60143)/Homer	YYYACCTAAC	1e0	-1.227e-03	1.0000	1012.0	5.06%	2580.2	5.64%
ATY19(MYB)/col-ATY19-DAP-Seq(GSE60143)/Homer	YYCACCWACCAT	1e0	-1.199e-03	1.0000	702.0	3.51%	1830.3	4.00%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-1.148e-03	1.0000	271.0	1.35%	764.6	1.67%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-1.086e-03	1.0000	647.0	3.23%	1698.5	3.71%
SPL3(SBP)/colamp-SPL3-DAP-Seq(GSE60143)/Homer	WDTTGTACGGAH	1e0	-1.067e-03	1.0000	17.0	0.08%	81.1	0.18%
SeqBias: C/A-bias	MMMMMMMMMM	1e0	-1.010e-03	1.0000	19932.0	99.66%	45679.8	99.79%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-1.005e-03	1.0000	67.0	0.34%	230.2	0.50%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-9.680e-04	1.0000	597.0	2.99%	1578.4	3.45%
At2g45680(TCP)/colamp-At2g45680-DAP-Seq(GSE60143)/Homer	GTGGGNCCCACNDND	1e0	-8.920e-04	1.0000	67.0	0.34%	231.8	0.51%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-8.500e-04	1.0000	438.0	2.19%	1188.7	2.60%
HLH-1(bHLH)/cElegans-Embryo-HLH1-ChIP-Seq(modEncode)/Homer	RACAGCTGTTBH	1e0	-7.760e-04	1.0000	1077.0	5.38%	2749.2	6.01%
ZML1(C2C2gata)/colamp-ZML1-DAP-Seq(GSE60143)/Homer	ATCWYRACCGTTSRW	1e0	-5.940e-04	1.0000	7.0	0.03%	48.1	0.11%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-5.620e-04	1.0000	179.0	0.90%	537.6	1.17%
At1g64620(C2C2dof)/colamp-At1g64620-DAP-Seq(GSE60143)/Homer	CACTTTTT	1e0	-5.310e-04	1.0000	2116.0	10.58%	5240.3	11.45%
AT5G23930(mTERF)/col-AT5G23930-DAP-Seq(GSE60143)/Homer	GGCGGCTG	1e0	-4.300e-04	1.0000	2637.0	13.18%	6479.1	14.15%
MYB10(MYB)/col-MYB10-DAP-Seq(GSE60143)/Homer	YCCACCTACCHH	1e0	-4.110e-04	1.0000	379.0	1.90%	1053.4	2.30%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-3.830e-04	1.0000	96.0	0.48%	320.0	0.70%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	-3.730e-04	1.0000	4.0	0.02%	37.2	0.08%
Unknown3/Drosophila-Promoters/Homer	ACVAKCTGGCAGCGC	1e0	-3.720e-04	1.0000	93.0	0.46%	311.6	0.68%
CELF2(RRM)/JSL1-CELF2-CLIP-Seq(GSE71264)/Homer	RGTGTCAG	1e0	-3.300e-04	1.0000	407.0	2.04%	1127.8	2.46%
JKD(C2H2)/col-JKD-DAP-Seq(GSE60143)/Homer	TTTTGTCGTTTT	1e0	-3.160e-04	1.0000	192.0	0.96%	578.3	1.26%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e0	-3.010e-04	1.0000	1016.0	5.08%	2626.8	5.74%
SeqBias: CG bias	SSSSSSSSSS	1e0	-3.000e-04	1.0000	13717.0	68.58%	32008.0	69.92%
AT5G60130(ABI3VP1)/col-AT5G60130-DAP-Seq(GSE60143)/Homer	WTTYTAAGVAAA	1e0	-2.990e-04	1.0000	2630.0	13.15%	6476.4	14.15%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-2.890e-04	1.0000	598.0	2.99%	1605.2	3.51%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e0	-2.850e-04	1.0000	168.0	0.84%	516.5	1.13%
At3g04030(G2like)/col-At3g04030-DAP-Seq(GSE60143)/Homer	DRGAATCT	1e0	-2.610e-04	1.0000	954.0	4.77%	2479.1	5.42%
SPL15(SBP)/colamp-SPL15-DAP-Seq(GSE60143)/Homer	WDWMMGTACADW	1e0	-2.590e-04	1.0000	1513.0	7.56%	3827.7	8.36%
Unknown6/Drosophila-Promoters/Homer	AATTTTAAAA	1e0	-2.350e-04	1.0000	861.0	4.30%	2255.4	4.93%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-2.300e-04	1.0000	292.0	1.46%	841.7	1.84%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-1.860e-04	1.0000	176.0	0.88%	542.4	1.18%
AT2G20110(CPP)/colamp-AT2G20110-DAP-Seq(GSE60143)/Homer	ATTYAAATHY	1e0	-1.820e-04	1.0000	1749.0	8.74%	4402.6	9.62%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-1.810e-04	1.0000	1487.0	7.43%	3776.0	8.25%
MYB105(MYB)/colamp-MYB105-DAP-Seq(GSE60143)/Homer	RATWCCGTTA	1e0	-1.740e-04	1.0000	664.0	3.32%	1778.7	3.89%
At4g16750(AP2EREBP)/col-At4g16750-DAP-Seq(GSE60143)/Homer	HACCGACAHA	1e0	-1.600e-04	1.0000	591.0	2.96%	1599.6	3.49%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-1.420e-04	1.0000	3177.0	15.88%	7793.6	17.03%
ARF16(ARF)/col-ARF16-DAP-Seq(GSE60143)/Homer	ATTTTACGAT	1e0	-1.330e-04	1.0000	93.0	0.46%	320.9	0.70%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-1.330e-04	1.0000	1110.0	5.55%	2874.8	6.28%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-1.290e-04	1.0000	3372.0	16.86%	8255.2	18.03%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e0	-9.700e-05	1.0000	43.0	0.21%	177.6	0.39%
AT2G15740(C2H2)/col-AT2G15740-DAP-Seq(GSE60143)/Homer	DHNDWATCGATD	1e0	-8.500e-05	1.0000	664.0	3.32%	1792.1	3.92%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-6.900e-05	1.0000	146.0	0.73%	472.9	1.03%
MYB62(MYB)/colamp-MYB62-DAP-Seq(GSE60143)/Homer	NTACCTAACT	1e0	-6.200e-05	1.0000	1482.0	7.41%	3792.4	8.28%
AT2G40260(G2like)/colamp-AT2G40260-DAP-Seq(GSE60143)/Homer	WAAAYATTCTTT	1e0	-5.400e-05	1.0000	2149.0	10.75%	5393.8	11.78%
MYB101(MYB)/colamp-MYB101-DAP-Seq(GSE60143)/Homer	TAACNRMY	1e0	-5.100e-05	1.0000	2865.0	14.32%	7094.0	15.50%
NUC(C2H2)/col-NUC-DAP-Seq(GSE60143)/Homer	HAVAAAACGACAAAA	1e0	-5.000e-05	1.0000	81.0	0.40%	294.9	0.64%
SFP1/SacCer-Promoters/Homer	DDAAAAATTTTY	1e0	-4.000e-05	1.0000	65.0	0.33%	249.9	0.55%
At5g62940(C2C2dof)/col-At5g62940-DAP-Seq(GSE60143)/Homer	WHWHHACTTTTT	1e0	-3.500e-05	1.0000	5130.0	25.65%	12420.0	27.13%
TCP17(TCP)/col-TCP17-DAP-Seq(GSE60143)/Homer	GTGGTCCCCA	1e0	-3.500e-05	1.0000	27.0	0.14%	132.4	0.29%
MYB58(MYB)/colamp-MYB58-DAP-Seq(GSE60143)/Homer	YYYACCWACC	1e0	-3.400e-05	1.0000	1001.0	5.00%	2640.8	5.77%
MYB63(MYB)/col-MYB63-DAP-Seq(GSE60143)/Homer	BHYACCWACCHH	1e0	-3.100e-05	1.0000	431.0	2.15%	1225.8	2.68%
LIN-15B(Zf)/cElegans-L3-LIN15B-ChIP-Seq(modEncode)/Homer	CARTGGAGCGCRYTTGCATT	1e0	-2.700e-05	1.0000	1.0	0.01%	28.9	0.06%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-2.700e-05	1.0000	992.0	4.96%	2623.3	5.73%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-2.500e-05	1.0000	246.0	1.23%	750.8	1.64%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	-2.500e-05	1.0000	2624.0	13.12%	6547.5	14.30%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-1.800e-05	1.0000	1764.0	8.82%	4504.4	9.84%
TCP1(TCP)/col-TCP1-DAP-Seq(GSE60143)/Homer	GGGGGCCCMMCN	1e0	-1.700e-05	1.0000	331.0	1.65%	977.5	2.14%
TCX2(CPP)/colamp-TCX2-DAP-Seq(GSE60143)/Homer	NNWWTTYRAAHN	1e0	-1.100e-05	1.0000	1867.0	9.34%	4763.9	10.41%
AT5G25475(ABI3VP1)/col-AT5G25475-DAP-Seq(GSE60143)/Homer	RNNRNCAAGCADNDB	1e0	-9.000e-06	1.0000	1375.0	6.88%	3582.7	7.83%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e0	-9.000e-06	1.0000	1376.0	6.88%	3585.7	7.83%
TCP3(TCP)/colamp-TCP3-DAP-Seq(GSE60143)/Homer	WGTGGTCCCAAHWWW	1e0	-7.000e-06	1.0000	174.0	0.87%	571.1	1.25%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e0	-6.000e-06	1.0000	1086.0	5.43%	2885.3	6.30%
AT1G49560(G2like)/colamp-AT1G49560-DAP-Seq(GSE60143)/Homer	GAWTCTNWDA	1e0	-5.000e-06	1.0000	1470.0	7.35%	3824.8	8.36%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-3.000e-06	1.0000	304.0	1.52%	929.7	2.03%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e0	-2.000e-06	1.0000	2240.0	11.20%	5708.9	12.47%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-1.000e-06	1.0000	50.0	0.25%	225.8	0.49%
Unknown5/Drosophila-Promoters/Homer	GCTGATAASV	1e0	-1.000e-06	1.0000	839.0	4.20%	2307.9	5.04%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e0	-1.000e-06	1.0000	814.0	4.07%	2250.4	4.92%
At1g68670(G2like)/colamp-At1g68670-DAP-Seq(GSE60143)/Homer	WNWWHNRAAGATTCT	1e0	-0.000e+00	1.0000	381.0	1.91%	1154.0	2.52%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-0.000e+00	1.0000	1003.0	5.01%	2735.6	5.98%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-0.000e+00	1.0000	885.0	4.42%	2442.5	5.34%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-0.000e+00	1.0000	2898.0	14.49%	7327.3	16.01%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-0.000e+00	1.0000	330.0	1.65%	1023.2	2.24%
Initiator/Drosophila-Promoters/Homer	NTCAGTYG	1e0	-0.000e+00	1.0000	3268.0	16.34%	8212.7	17.94%
AT4G37180(G2like)/col-AT4G37180-DAP-Seq(GSE60143)/Homer	AGAATCTTNN	1e0	-0.000e+00	1.0000	1264.0	6.32%	3387.3	7.40%
At1g25550(G2like)/colamp-At1g25550-DAP-Seq(GSE60143)/Homer	NAGATTCY	1e0	-0.000e+00	1.0000	1091.0	5.46%	2964.1	6.48%
MYB51(MYB)/col-MYB51-DAP-Seq(GSE60143)/Homer	GGTAGGTG	1e0	-0.000e+00	1.0000	840.0	4.20%	2339.0	5.11%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-0.000e+00	1.0000	1077.0	5.38%	2932.1	6.41%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-0.000e+00	1.0000	2294.0	11.47%	5900.1	12.89%
SOL1(CPP)/colamp-SOL1-DAP-Seq(GSE60143)/Homer	ATTTAAATHN	1e0	-0.000e+00	1.0000	1796.0	8.98%	4697.1	10.26%
AT1G24250(Orphan)/col-AT1G24250-DAP-Seq(GSE60143)/Homer	KTDGTTGGTDGTTGG	1e0	-0.000e+00	1.0000	247.0	1.23%	811.7	1.77%
IDD2(C2H2)/colamp-IDD2-DAP-Seq(GSE60143)/Homer	HAVAAAAMGACAAAA	1e0	-0.000e+00	1.0000	110.0	0.55%	427.0	0.93%
ATY13(MYB)/col-ATY13-DAP-Seq(GSE60143)/Homer	YYYAACYRHH	1e0	-0.000e+00	1.0000	4423.0	22.12%	10989.6	24.01%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-0.000e+00	1.0000	830.0	4.15%	2336.0	5.10%
AT5G02460(C2C2dof)/col-AT5G02460-DAP-Seq(GSE60143)/Homer	CHCCTTTT	1e0	-0.000e+00	1.0000	3143.0	15.72%	7963.6	17.40%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-0.000e+00	1.0000	2748.0	13.74%	7025.2	15.35%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e0	-0.000e+00	1.0000	364.0	1.82%	1141.1	2.49%
NGA4(ABI3VP1)/col-NGA4-DAP-Seq(GSE60143)/Homer	TKNTCAGGTG	1e0	-0.000e+00	1.0000	3371.0	16.86%	8534.1	18.64%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-0.000e+00	1.0000	1377.0	6.88%	3726.4	8.14%
MYB3R4(MYB)/col-MYB3R4-DAP-Seq(GSE60143)/Homer	AWWTAACCGTTR	1e0	-0.000e+00	1.0000	108.0	0.54%	435.6	0.95%
At3g12730(G2like)/colamp-At3g12730-DAP-Seq(GSE60143)/Homer	AAGATTCT	1e0	-0.000e+00	1.0000	1518.0	7.59%	4080.2	8.91%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-0.000e+00	1.0000	384.0	1.92%	1213.2	2.65%
AT5G45580(G2like)/colamp-AT5G45580-DAP-Seq(GSE60143)/Homer	ADRGAATCTH	1e0	-0.000e+00	1.0000	1611.0	8.05%	4323.6	9.45%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-0.000e+00	1.0000	2768.0	13.84%	7145.7	15.61%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-0.000e+00	1.0000	4525.0	22.62%	11332.1	24.76%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-0.000e+00	1.0000	575.0	2.88%	1732.2	3.78%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e0	-0.000e+00	1.0000	913.0	4.57%	2603.8	5.69%
AtGRF6(GRF)/col-AtGRF6-DAP-Seq(GSE60143)/Homer	NTGTCAGADNNNNNN	1e0	-0.000e+00	1.0000	1491.0	7.46%	4052.5	8.85%
MYB3R1(MYB)/col-MYB3R1-DAP-Seq(GSE60143)/Homer	WWDTDACCGTTR	1e0	-0.000e+00	1.0000	226.0	1.13%	799.7	1.75%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-0.000e+00	1.0000	6168.0	30.84%	15236.7	33.29%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e0	-0.000e+00	1.0000	1938.0	9.69%	5176.6	11.31%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e0	-0.000e+00	1.0000	1735.0	8.67%	5123.4	11.19%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-0.000e+00	1.0000	431.0	2.15%	1382.7	3.02%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e0	-0.000e+00	1.0000	5237.0	26.19%	13162.8	28.76%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e0	-0.000e+00	1.0000	1349.0	6.74%	3859.1	8.43%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e0	-0.000e+00	1.0000	2504.0	12.52%	7195.3	15.72%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	-0.000e+00	1.0000	2874.0	14.37%	7521.9	16.43%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-0.000e+00	1.0000	1445.0	7.22%	4638.5	10.13%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e0	-0.000e+00	1.0000	7287.0	36.44%	18149.0	39.65%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-0.000e+00	1.0000	1702.0	8.51%	5182.4	11.32%
At2g01060(G2like)/colamp-At2g01060-DAP-Seq(GSE60143)/Homer	AGATKCBNWW	1e0	-0.000e+00	1.0000	3592.0	17.96%	9521.6	20.80%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	-0.000e+00	1.0000	1141.0	5.71%	3672.9	8.02%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-0.000e+00	1.0000	3654.0	18.27%	10120.3	22.11%
GRF9(GRF)/colamp-GRF9-DAP-Seq(GSE60143)/Homer	NWCTGACANNNNNNN	1e0	-0.000e+00	1.0000	1135.0	5.67%	3234.7	7.07%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e0	-0.000e+00	1.0000	2127.0	10.63%	5924.5	12.94%
bZIP18(bZIP)/colamp-bZIP18-DAP-Seq(GSE60143)/Homer	KGMCAGCTND	1e0	-0.000e+00	1.0000	8128.0	40.64%	20194.6	44.12%
At3g24120(G2like)/col-At3g24120-DAP-Seq(GSE60143)/Homer	NWWAGMATMW	1e0	-0.000e+00	1.0000	3786.0	18.93%	10038.3	21.93%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e0	-0.000e+00	1.0000	396.0	1.98%	1631.0	3.56%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-0.000e+00	1.0000	350.0	1.75%	1160.5	2.54%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e0	-0.000e+00	1.0000	1000.0	5.00%	3305.5	7.22%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	-0.000e+00	1.0000	0.0	0.00%	4.1	0.01%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-0.000e+00	1.0000	2382.0	11.91%	6552.2	14.31%
 Ik-1	NHTTGGGAATRCC	1e0	0.000e+00	1.0000	20000.0	100.00%	45775.4	100.00%