Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 20031)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 52000)	% of Background Sequences with Motif
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e-294	-6.791e+02	0.0000	643.0	3.21%	36.4	0.07%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-15	-3.617e+01	0.0000	508.0	2.54%	780.5	1.59%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-8	-2.016e+01	0.0000	242.0	1.21%	360.5	0.73%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-7	-1.746e+01	0.0000	291.0	1.46%	473.9	0.96%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-6	-1.447e+01	0.0001	254.0	1.27%	420.7	0.86%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e-6	-1.436e+01	0.0001	775.0	3.88%	1538.9	3.13%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e-5	-1.371e+01	0.0001	5377.0	26.88%	12361.0	25.14%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e-5	-1.238e+01	0.0005	849.0	4.25%	1733.0	3.53%
bZIP18(bZIP)/colamp-bZIP18-DAP-Seq(GSE60143)/Homer	KGMCAGCTND	1e-5	-1.186e+01	0.0007	9279.0	46.39%	21916.6	44.58%
AT4G18450(AP2EREBP)/col-AT4G18450-DAP-Seq(GSE60143)/Homer	ATGGCGGCKG	1e-5	-1.169e+01	0.0008	395.0	1.98%	740.3	1.51%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e-4	-1.116e+01	0.0012	1025.0	5.12%	2153.4	4.38%
bZIP52(bZIP)/colamp-bZIP52-DAP-Seq(GSE60143)/Homer	NDNHCAGCTGTCANN	1e-4	-1.049e+01	0.0021	2419.0	12.10%	5415.8	11.02%
At5g05790(MYBrelated)/col-At5g05790-DAP-Seq(GSE60143)/Homer	AYCTTATC	1e-4	-1.001e+01	0.0032	2417.0	12.08%	5425.6	11.04%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e-4	-9.620e+00	0.0044	1967.0	9.84%	4376.2	8.90%
ERF10(AP2EREBP)/col-ERF10-DAP-Seq(GSE60143)/Homer	RTGGCGGCGG	1e-4	-9.366e+00	0.0053	620.0	3.10%	1267.1	2.58%
At3g11280(MYBrelated)/col-At3g11280-DAP-Seq(GSE60143)/Homer	GATAAGRT	1e-4	-9.216e+00	0.0057	2291.0	11.46%	5152.5	10.48%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-3	-9.167e+00	0.0057	3046.0	15.23%	6946.1	14.13%
bHLH18(bHLH)/col-bHLH18-DAP-Seq(GSE60143)/Homer	CACGTGTTYCACGTG	1e-3	-8.906e+00	0.0069	26.0	0.13%	21.9	0.04%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e-3	-8.891e+00	0.0069	2158.0	10.79%	4848.3	9.86%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-3	-8.836e+00	0.0069	410.0	2.05%	807.2	1.64%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e-3	-8.831e+00	0.0069	597.0	2.99%	1224.9	2.49%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e-3	-8.625e+00	0.0075	2806.0	14.03%	6394.0	13.01%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-3	-8.594e+00	0.0075	4074.0	20.37%	9429.1	19.18%
SPL9(SBP)/colamp-SPL9-DAP-Seq(GSE60143)/Homer	BTGTACTT	1e-3	-8.366e+00	0.0089	2943.0	14.71%	6730.0	13.69%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e-3	-8.308e+00	0.0091	598.0	2.99%	1235.1	2.51%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-3	-8.188e+00	0.0099	680.0	3.40%	1423.9	2.90%
Unknown2/Drosophila-Promoters/Homer	CATCMCTA	1e-3	-7.992e+00	0.0115	1880.0	9.40%	4220.6	8.59%
DREB26(AP2EREBP)/col-DREB26-DAP-Seq(GSE60143)/Homer	CCACCGACAH	1e-3	-7.906e+00	0.0121	185.0	0.92%	331.4	0.67%
Unknown4/Arabidopsis-Promoters/Homer	CKTCKTCTTY	1e-3	-7.824e+00	0.0127	1339.0	6.69%	2954.1	6.01%
At1g49010(MYBrelated)/col-At1g49010-DAP-Seq(GSE60143)/Homer	RGATAASNTT	1e-3	-7.803e+00	0.0127	4011.0	20.05%	9312.1	18.94%
ANAC062(NAC)/colamp-ANAC062-DAP-Seq(GSE60143)/Homer	TACTTANTNWNYAAG	1e-3	-7.778e+00	0.0127	528.0	2.64%	1086.6	2.21%
NGA4(ABI3VP1)/col-NGA4-DAP-Seq(GSE60143)/Homer	TKNTCAGGTG	1e-3	-7.733e+00	0.0127	3855.0	19.28%	8940.2	18.19%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e-3	-7.624e+00	0.0136	3724.0	18.62%	8630.3	17.55%
Zelda(Zf)/Embryo-zld-ChIP-Seq(GSE65441)/Homer	KBCTACCTGW	1e-3	-7.597e+00	0.0136	551.0	2.76%	1142.0	2.32%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e-3	-7.579e+00	0.0136	2355.0	11.77%	5359.4	10.90%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e-3	-7.520e+00	0.0139	660.0	3.30%	1390.2	2.83%
ERF5(AP2EREBP)/colamp-ERF5-DAP-Seq(GSE60143)/Homer	DCMGCCGCCA	1e-3	-7.487e+00	0.0140	423.0	2.11%	855.2	1.74%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e-3	-7.202e+00	0.0181	1979.0	9.89%	4480.0	9.11%
AT5G61620(MYBrelated)/colamp-AT5G61620-DAP-Seq(GSE60143)/Homer	CTTATCCA	1e-3	-7.008e+00	0.0214	2667.0	13.33%	6124.4	12.46%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-3	-6.975e+00	0.0215	355.0	1.77%	711.2	1.45%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e-2	-6.840e+00	0.0241	2262.0	11.31%	5165.7	10.51%
DEL1(E2FDP)/colamp-DEL1-DAP-Seq(GSE60143)/Homer	TTCCCGCCAA	1e-2	-6.805e+00	0.0243	18.0	0.09%	14.5	0.03%
AGL6(MADS)/col-AGL6-DAP-Seq(GSE60143)/Homer	TTWCCWWAWWDGGWA	1e-2	-6.470e+00	0.0332	245.0	1.23%	475.8	0.97%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e-2	-6.195e+00	0.0427	377.0	1.88%	772.3	1.57%
ESE3(AP2EREBP)/col-ESE3-DAP-Seq(GSE60143)/Homer	GACGGTGG	1e-2	-6.111e+00	0.0455	1091.0	5.46%	2421.6	4.93%
At5g47390(MYBrelated)/col-At5g47390-DAP-Seq(GSE60143)/Homer	CTTATCCA	1e-2	-6.110e+00	0.0455	2367.0	11.83%	5444.1	11.07%
SeqBias: CG-repeat	CGCGCGCGCG	1e-2	-6.082e+00	0.0455	1562.0	7.81%	3531.9	7.18%
At5g58900(MYBrelated)/colamp-At5g58900-DAP-Seq(GSE60143)/Homer	WWWTYTTATCTWWWW	1e-2	-6.003e+00	0.0475	3393.0	16.96%	7909.2	16.09%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e-2	-5.926e+00	0.0502	331.0	1.65%	673.6	1.37%
At1g13300(G2like)/col-At1g13300-DAP-Seq(GSE60143)/Homer	GAATCTWAGATTCYN	1e-2	-5.888e+00	0.0511	18.0	0.09%	16.8	0.03%
ARF16(ARF)/col-ARF16-DAP-Seq(GSE60143)/Homer	ATTTTACGAT	1e-2	-5.796e+00	0.0549	171.0	0.85%	322.3	0.66%
AT5G56840(MYBrelated)/colamp-AT5G56840-DAP-Seq(GSE60143)/Homer	TGGATAAGGT	1e-2	-5.748e+00	0.0566	2517.0	12.58%	5818.0	11.83%
NTM2(NAC)/col-NTM2-DAP-Seq(GSE60143)/Homer	CTTRTNNNAYAAGBH	1e-2	-5.676e+00	0.0596	700.0	3.50%	1521.5	3.09%
AGL15(MADS)/col-AGL15-DAP-Seq(GSE60143)/Homer	TTTCCHWATWDGGAA	1e-2	-5.647e+00	0.0603	292.0	1.46%	590.1	1.20%
ERF9(AP2EREBP)/colamp-ERF9-DAP-Seq(GSE60143)/Homer	AWATGGCGGCGG	1e-2	-5.628e+00	0.0603	184.0	0.92%	353.0	0.72%
ANAC053(NAC)/colamp-ANAC053-DAP-Seq(GSE60143)/Homer	TDCTTGNNNNNCAAG	1e-2	-5.576e+00	0.0624	606.0	3.03%	1306.9	2.66%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e-2	-5.361e+00	0.0759	528.0	2.64%	1131.7	2.30%
VND2(NAC)/col-VND2-DAP-Seq(GSE60143)/Homer	DNCKTNNNNNNNAAG	1e-2	-5.313e+00	0.0783	1146.0	5.73%	2574.7	5.24%
ANAC058(NAC)/col-ANAC058-DAP-Seq(GSE60143)/Homer	TWCTTGTDNNACAAG	1e-2	-5.298e+00	0.0783	656.0	3.28%	1428.2	2.91%
ERF104(AP2EREBP)/col-ERF104-DAP-Seq(GSE60143)/Homer	GGCGGCGG	1e-2	-5.186e+00	0.0860	924.0	4.62%	2056.3	4.18%
MYB101(MYB)/colamp-MYB101-DAP-Seq(GSE60143)/Homer	TAACNRMY	1e-2	-5.103e+00	0.0919	3616.0	18.08%	8493.7	17.28%
ERF15(AP2EREBP)/colamp-ERF15-DAP-Seq(GSE60143)/Homer	WDHAGCMGCCAT	1e-2	-5.095e+00	0.0919	2710.0	13.55%	6311.7	12.84%
Unknown2/Arabidopsis-Promoters/Homer	AAACGACGTCGTTTT	1e-2	-5.060e+00	0.0929	9.0	0.04%	5.9	0.01%
NST1(NAC)/colamp-NST1-DAP-Seq(GSE60143)/Homer	WRCTTRWWNWWYAAG	1e-2	-5.047e+00	0.0929	1139.0	5.70%	2566.6	5.22%
ERF3(AP2EREBP)/colamp-ERF3-DAP-Seq(GSE60143)/Homer	ATGGCGGCGG	1e-2	-4.941e+00	0.1014	518.0	2.59%	1118.0	2.27%
ANAC070(NAC)/colamp-ANAC070-DAP-Seq(GSE60143)/Homer	CTTRHDNHNBAAGHW	1e-2	-4.921e+00	0.1019	1483.0	7.41%	3385.9	6.89%
ANAC071(NAC)/col-ANAC071-DAP-Seq(GSE60143)/Homer	DNCKTNDNNNHNAAG	1e-2	-4.918e+00	0.1019	1038.0	5.19%	2332.6	4.74%
ANAC005(NAC)/col-ANAC005-DAP-Seq(GSE60143)/Homer	WVCTTVTWNHABAAG	1e-2	-4.878e+00	0.1032	710.0	3.55%	1564.9	3.18%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e-2	-4.736e+00	0.1173	626.0	3.13%	1372.5	2.79%
ESE1(AP2EREBP)/col-ESE1-DAP-Seq(GSE60143)/Homer	GGCGGCGG	1e-2	-4.676e+00	0.1227	706.0	3.53%	1560.1	3.17%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e-2	-4.652e+00	0.1239	1689.0	8.45%	3886.7	7.91%
SMB(NAC)/colamp-SMB-DAP-Seq(GSE60143)/Homer	CTTVNNNNDBAAGHW	1e-2	-4.621e+00	0.1260	1144.0	5.72%	2592.4	5.27%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e-2	-4.607e+00	0.1260	313.0	1.57%	654.5	1.33%
NAC2(NAC)/colamp-NAC2-DAP-Seq(GSE60143)/Homer	TDCTTGNNNNNCAAG	1e-1	-4.455e+00	0.1448	802.0	4.01%	1791.6	3.64%
ERF73(AP2EREBP)/col-ERF73-DAP-Seq(GSE60143)/Homer	CCGCCGCC	1e-1	-4.345e+00	0.1595	626.0	3.13%	1383.0	2.81%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e-1	-4.273e+00	0.1690	44.0	0.22%	69.9	0.14%
JGL(C2H2)/col-JGL-DAP-Seq(GSE60143)/Homer	ACYTTCAGTT	1e-1	-4.246e+00	0.1714	2964.0	14.82%	6967.9	14.17%
AT3G51470(DBP)/col-AT3G51470-DAP-Seq(GSE60143)/Homer	TTWHGGTGCACC	1e-1	-4.222e+00	0.1733	1831.0	9.16%	4244.7	8.63%
ANAC028(NAC)/col-ANAC028-DAP-Seq(GSE60143)/Homer	WRCTTGNNNNNCAAG	1e-1	-4.171e+00	0.1802	868.0	4.34%	1956.0	3.98%
ANAC020(NAC)/col-ANAC020-DAP-Seq(GSE60143)/Homer	DVCKTGHNNNDCAAG	1e-1	-4.165e+00	0.1802	694.0	3.47%	1547.0	3.15%
MYB56(MYB)/colamp-MYB56-DAP-Seq(GSE60143)/Homer	HTAACGRMHY	1e-1	-4.157e+00	0.1802	1260.0	6.30%	2884.7	5.87%
ERF2(AP2EREBP)/colamp-ERF2-DAP-Seq(GSE60143)/Homer	GGCGGCTG	1e-1	-4.137e+00	0.1802	645.0	3.23%	1432.9	2.91%
SHN3(AP2EREBP)/col-SHN3-DAP-Seq(GSE60143)/Homer	CCGCCGCC	1e-1	-4.113e+00	0.1817	320.0	1.60%	679.8	1.38%
At5g08520(MYBrelated)/colamp-At5g08520-DAP-Seq(GSE60143)/Homer	ADBSTTATCY	1e-1	-4.072e+00	0.1870	2409.0	12.04%	5639.6	11.47%
AT3G57600(AP2EREBP)/col-AT3G57600-DAP-Seq(GSE60143)/Homer	GGCGGTGG	1e-1	-4.025e+00	0.1938	785.0	3.92%	1764.9	3.59%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-1	-4.018e+00	0.1938	2397.0	11.98%	5613.2	11.42%
HAP3(CCAATHAP3)/col-HAP3-DAP-Seq(GSE60143)/Homer	TGATGGAW	1e-1	-3.984e+00	0.1973	414.0	2.07%	899.0	1.83%
WRKY18(WRKY)/col-WRKY18-DAP-Seq(GSE60143)/Homer	NNNTTGACYWNNNNN	1e-1	-3.948e+00	0.2021	2520.0	12.60%	5913.5	12.03%
ANAC050(NAC)/colamp-ANAC050-DAP-Seq(GSE60143)/Homer	WNCTTGNNNNNCAAG	1e-1	-3.935e+00	0.2026	646.0	3.23%	1440.7	2.93%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e-1	-3.930e+00	0.2026	896.0	4.48%	2029.1	4.13%
At2g03500(G2like)/col-At2g03500-DAP-Seq(GSE60143)/Homer	WWAGAATATTCT	1e-1	-3.878e+00	0.2097	318.0	1.59%	679.3	1.38%
ANAC083(NAC)/col-ANAC083-DAP-Seq(GSE60143)/Homer	CKTRWNNNWYAMGTA	1e-1	-3.867e+00	0.2097	849.0	4.25%	1920.7	3.91%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e-1	-3.784e+00	0.2253	371.0	1.85%	803.4	1.63%
ERF1(AP2EREBP)/colamp-ERF1-DAP-Seq(GSE60143)/Homer	GGCGGCTR	1e-1	-3.778e+00	0.2253	575.0	2.88%	1278.4	2.60%
ANAC103(NAC)/col-ANAC103-DAP-Seq(GSE60143)/Homer	AACTTGNWNWNCAAG	1e-1	-3.777e+00	0.2253	446.0	2.23%	977.5	1.99%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-1	-3.776e+00	0.2253	2572.0	12.86%	6048.3	12.30%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e-1	-3.767e+00	0.2253	3074.0	15.37%	7261.4	14.77%
CES-1(Homeobox)/cElegans-L1-CES1-ChIP-Seq(modEncode)/Homer	AAATTSAATTTN	1e-1	-3.747e+00	0.2253	741.0	3.71%	1669.8	3.40%
AT3G42860(zfGRF)/col-AT3G42860-DAP-Seq(GSE60143)/Homer	CGTTGACTTN	1e-1	-3.736e+00	0.2253	374.0	1.87%	811.0	1.65%
AT1G44830(AP2EREBP)/col-AT1G44830-DAP-Seq(GSE60143)/Homer	NCCACCGACA	1e-1	-3.723e+00	0.2253	208.0	1.04%	431.8	0.88%
VND6(NAC)/col-VND6-DAP-Seq(GSE60143)/Homer	DCTTNHTTTTYAMGY	1e-1	-3.697e+00	0.2264	1298.0	6.49%	2993.2	6.09%
WRKY28(WRKY)/col-WRKY28-DAP-Seq(GSE60143)/Homer	BGTTGACTWH	1e-1	-3.636e+00	0.2382	2037.0	10.18%	4767.7	9.70%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e-1	-3.625e+00	0.2385	3072.0	15.36%	7266.0	14.78%
AT3G10030(Trihelix)/colamp-AT3G10030-DAP-Seq(GSE60143)/Homer	GCCGTTAA	1e-1	-3.618e+00	0.2385	837.0	4.18%	1900.4	3.87%
MYB77(MYB)/col-MYB77-DAP-Seq(GSE60143)/Homer	NYAACBGYMC	1e-1	-3.604e+00	0.2389	2060.0	10.30%	4824.7	9.81%
ANAC096(NAC)/colamp-ANAC096-DAP-Seq(GSE60143)/Homer	TACTTGWNNNWCAAG	1e-1	-3.564e+00	0.2464	780.0	3.90%	1767.3	3.59%
VND3(NAC)/colamp-VND3-DAP-Seq(GSE60143)/Homer	TRCTTGWDNHWCAAG	1e-1	-3.559e+00	0.2464	845.0	4.23%	1921.5	3.91%
SEP3(MADS)/Arabidoposis-Flower-Sep3-ChIP-Seq/Homer	CCAAAAAGGG	1e-1	-3.504e+00	0.2568	2005.0	10.03%	4697.4	9.55%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e-1	-3.476e+00	0.2615	314.0	1.57%	678.2	1.38%
At5g08750(C3H)/col-At5g08750-DAP-Seq(GSE60143)/Homer	NWDTTGCGGCTR	1e-1	-3.476e+00	0.2615	396.0	1.98%	868.4	1.77%
ANAC011(NAC)/col-ANAC011-DAP-Seq(GSE60143)/Homer	TDCTTGYRNNDCAAG	1e-1	-3.468e+00	0.2615	432.0	2.16%	952.3	1.94%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e-1	-3.451e+00	0.2615	20.0	0.10%	27.8	0.06%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e-1	-3.411e+00	0.2692	804.0	4.02%	1829.8	3.72%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e-1	-3.402e+00	0.2693	157.0	0.78%	321.8	0.65%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-1	-3.352e+00	0.2807	225.0	1.12%	476.4	0.97%
VND1(NAC)/col-VND1-DAP-Seq(GSE60143)/Homer	CTTRWDNHWYAAGYW	1e-1	-3.346e+00	0.2807	987.0	4.93%	2266.7	4.61%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e-1	-3.295e+00	0.2921	13.0	0.07%	15.7	0.03%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e-1	-3.294e+00	0.2921	2616.0	13.08%	6183.2	12.58%
At1g19000(MYBrelated)/colamp-At1g19000-DAP-Seq(GSE60143)/Homer	WWTGGATAADDT	1e-1	-3.282e+00	0.2921	1525.0	7.62%	3555.1	7.23%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e-1	-3.268e+00	0.2927	149.0	0.74%	305.3	0.62%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e-1	-3.236e+00	0.2995	755.0	3.77%	1719.4	3.50%
GATA14(C2C2gata)/col-GATA14-DAP-Seq(GSE60143)/Homer	AYCAGATCTG	1e-1	-3.229e+00	0.2995	757.0	3.79%	1724.3	3.51%
RAP212(AP2EREBP)/col-RAP212-DAP-Seq(GSE60143)/Homer	CGCCGCCATTTT	1e-1	-3.225e+00	0.2995	561.0	2.80%	1261.0	2.57%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e-1	-3.118e+00	0.3290	217.0	1.08%	462.9	0.94%
ATY13(MYB)/col-ATY13-DAP-Seq(GSE60143)/Homer	YYYAACYRHH	1e-1	-3.118e+00	0.3290	5173.0	25.86%	12408.1	25.24%
WRKY33(WRKY)/col-WRKY33-DAP-Seq(GSE60143)/Homer	CGTTGACYAW	1e-1	-3.112e+00	0.3290	1202.0	6.01%	2789.6	5.67%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e-1	-3.109e+00	0.3290	174.0	0.87%	364.3	0.74%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e-1	-3.106e+00	0.3290	1615.0	8.08%	3781.0	7.69%
DEL2(E2FDP)/col-DEL2-DAP-Seq(GSE60143)/Homer	WTTTCSCGCC	1e-1	-3.083e+00	0.3290	481.0	2.40%	1077.4	2.19%
ERF13(AP2EREBP)/colamp-ERF13-DAP-Seq(GSE60143)/Homer	TYAGCCGCCATT	1e-1	-3.073e+00	0.3290	1062.0	5.31%	2456.6	5.00%
AT1G47655(C2C2dof)/colamp-AT1G47655-DAP-Seq(GSE60143)/Homer	YHACTTTTTS	1e-1	-3.057e+00	0.3309	6777.0	33.88%	16331.0	33.22%
At1g77640(AP2EREBP)/col-At1g77640-DAP-Seq(GSE60143)/Homer	TGTCGGTGGA	1e-1	-3.048e+00	0.3313	128.0	0.64%	261.7	0.53%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-1	-3.045e+00	0.3313	2948.0	14.74%	7003.4	14.25%
SND2(NAC)/colamp-SND2-DAP-Seq(GSE60143)/Homer	CTTVWNNNWBAAGNW	1e-1	-3.016e+00	0.3371	593.0	2.96%	1343.8	2.73%
CRF4(AP2EREBP)/colamp-CRF4-DAP-Seq(GSE60143)/Homer	CGCCGCCA	1e-1	-2.961e+00	0.3534	488.0	2.44%	1097.6	2.23%
CRF10(AP2EREBP)/col100-CRF10-DAP-Seq(GSE60143)/Homer	DCCGCCGYHA	1e-1	-2.950e+00	0.3547	961.0	4.81%	2220.4	4.52%
MYB83(MYB)/colamp-MYB83-DAP-Seq(GSE60143)/Homer	CACCAACCWH	1e-1	-2.912e+00	0.3658	2362.0	11.81%	5593.3	11.38%
AT3G58630(Trihelix)/col-AT3G58630-DAP-Seq(GSE60143)/Homer	TCTCCGGCGA	1e-1	-2.910e+00	0.3658	128.0	0.64%	263.3	0.54%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-1	-2.902e+00	0.3658	1772.0	8.86%	4169.5	8.48%
WRKY47(WRKY)/colamp-WRKY47-DAP-Seq(GSE60143)/Homer	WAAGTCAACGBT	1e-1	-2.896e+00	0.3658	394.0	1.97%	878.3	1.79%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-1	-2.874e+00	0.3694	963.0	4.81%	2228.1	4.53%
VIP1(bZIP)/col-VIP1-DAP-Seq(GSE60143)/Homer	NTTGACAGCTGTCAN	1e-1	-2.869e+00	0.3694	312.0	1.56%	687.5	1.40%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e-1	-2.810e+00	0.3883	819.0	4.09%	1887.5	3.84%
ABR1(AP2EREBP)/colamp-ABR1-DAP-Seq(GSE60143)/Homer	AAATGGCGGCGG	1e-1	-2.777e+00	0.3984	766.0	3.83%	1762.5	3.59%
ERF11(AP2EREBP)/col-ERF11-DAP-Seq(GSE60143)/Homer	RTGGCGGCGG	1e-1	-2.765e+00	0.4004	699.0	3.50%	1603.9	3.26%
WRKY45(WRKY)/col-WRKY45-DAP-Seq(GSE60143)/Homer	HNNNKTTGACTWWNH	1e-1	-2.763e+00	0.4004	651.0	3.26%	1489.6	3.03%
MYB4(MYB)/col200-MYB4-DAP-Seq(GSE60143)/Homer	WAGKTAGGTARR	1e-1	-2.760e+00	0.4004	759.0	3.79%	1746.3	3.55%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e-1	-2.753e+00	0.4004	1240.0	6.20%	2897.1	5.89%
PLT3(AP2EREBP)/col-PLT3-DAP-Seq(GSE60143)/Homer	GCACGNWTHYCGAGG	1e-1	-2.734e+00	0.4018	59.0	0.29%	112.6	0.23%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e-1	-2.662e+00	0.4292	749.0	3.74%	1726.5	3.51%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e-1	-2.658e+00	0.4292	136.0	0.68%	286.0	0.58%
At1g14580(C2H2)/colamp-At1g14580-DAP-Seq(GSE60143)/Homer	CASAAAAMGACAAAA	1e-1	-2.621e+00	0.4413	335.0	1.68%	747.7	1.52%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e-1	-2.598e+00	0.4483	2246.0	11.23%	5333.1	10.85%
VND4(NAC)/colamp-VND4-DAP-Seq(GSE60143)/Homer	WRCTTGWANWWCAAG	1e-1	-2.593e+00	0.4483	822.0	4.11%	1904.0	3.87%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e-1	-2.586e+00	0.4483	312.0	1.56%	695.0	1.41%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e-1	-2.576e+00	0.4497	189.0	0.95%	408.0	0.83%
MYB88(MYB)/col-MYB88-DAP-Seq(GSE60143)/Homer	HNACGCTCCT	1e-1	-2.562e+00	0.4529	2207.0	11.04%	5241.2	10.66%
NTM1(NAC)/col-NTM1-DAP-Seq(GSE60143)/Homer	ACTTRTARAASAAGT	1e-1	-2.556e+00	0.4529	673.0	3.36%	1549.7	3.15%
AT1G19040(NAC)/col-AT1G19040-DAP-Seq(GSE60143)/Homer	CTTGNDNHNCAAGYW	1e-1	-2.472e+00	0.4897	103.0	0.52%	213.0	0.43%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e-1	-2.452e+00	0.4963	249.0	1.24%	550.2	1.12%
REM19(REM)/colamp-REM19-DAP-Seq(GSE60143)/Homer	AAAAAAAA	1e-1	-2.399e+00	0.5199	1303.0	6.51%	3067.5	6.24%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e-1	-2.393e+00	0.5200	117.0	0.58%	247.0	0.50%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e-1	-2.367e+00	0.5306	820.0	4.10%	1908.7	3.88%
ANAC016(NAC)/col-ANAC016-DAP-Seq(GSE60143)/Homer	WNCTTGNNNNNCAMG	1e-1	-2.344e+00	0.5395	898.0	4.49%	2096.9	4.27%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e-1	-2.323e+00	0.5474	295.0	1.47%	661.8	1.35%
ERF4(AP2EREBP)/colamp-ERF4-DAP-Seq(GSE60143)/Homer	WDWTGGCGGCGG	1e-1	-2.312e+00	0.5501	829.0	4.15%	1932.5	3.93%
WRKY15(WRKY)/col-WRKY15-DAP-Seq(GSE60143)/Homer	VGTTGACTWW	1e0	-2.296e+00	0.5560	1521.0	7.61%	3599.0	7.32%
WRKY46(WRKY)/colamp-WRKY46-DAP-Seq(GSE60143)/Homer	AAAGTCAACGSN	1e0	-2.284e+00	0.5590	85.0	0.43%	175.6	0.36%
SND3(NAC)/col-SND3-DAP-Seq(GSE60143)/Homer	CTTNHNNNDNAAGNH	1e0	-2.281e+00	0.5590	848.0	4.24%	1979.8	4.03%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-2.274e+00	0.5590	325.0	1.62%	733.9	1.49%
ANAC004(NAC)/colamp-ANAC004-DAP-Seq(GSE60143)/Homer	WNCTTVYNNNRBAAG	1e0	-2.272e+00	0.5590	469.0	2.34%	1074.6	2.19%
AT2G20400(G2like)/colamp-AT2G20400-DAP-Seq(GSE60143)/Homer	DNVGAATATTCBNHN	1e0	-2.265e+00	0.5590	166.0	0.83%	361.0	0.73%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e0	-2.264e+00	0.5590	1803.0	9.01%	4283.9	8.71%
MYB30(MYB)/colamp-MYB30-DAP-Seq(GSE60143)/Homer	AGGTAGTTGG	1e0	-2.248e+00	0.5595	1514.0	7.57%	3585.4	7.29%
At1g22810(AP2EREBP)/colamp-At1g22810-DAP-Seq(GSE60143)/Homer	BCACCGACANNN	1e0	-2.246e+00	0.5595	272.0	1.36%	609.6	1.24%
STOP1(C2H2)/colamp-STOP1-DAP-Seq(GSE60143)/Homer	DTATCTGGKGRAGGT	1e0	-2.239e+00	0.5595	589.0	2.94%	1361.3	2.77%
Unknown3/Drosophila-Promoters/Homer	ACVAKCTGGCAGCGC	1e0	-2.232e+00	0.5595	148.0	0.74%	320.3	0.65%
GATA12(C2C2gata)/col-GATA12-DAP-Seq(GSE60143)/Homer	YAGATCTRAW	1e0	-2.230e+00	0.5595	637.0	3.19%	1476.5	3.00%
WRKY25(WRKY)/colamp-WRKY25-DAP-Seq(GSE60143)/Homer	NNNNHRGTCAAMNNN	1e0	-2.219e+00	0.5598	1727.0	8.63%	4102.8	8.35%
WRKY30(WRKY)/colamp-WRKY30-DAP-Seq(GSE60143)/Homer	CGTTGACTTN	1e0	-2.217e+00	0.5598	389.0	1.94%	886.8	1.80%
WRKY42(WRKY)/colamp-WRKY42-DAP-Seq(GSE60143)/Homer	NAAAGTCAACGN	1e0	-2.216e+00	0.5598	540.0	2.70%	1246.0	2.53%
HSFA6B(HSF)/colamp-HSFA6B-DAP-Seq(GSE60143)/Homer	NTTCTAGAANHTTCT	1e0	-2.201e+00	0.5610	616.0	3.08%	1427.1	2.90%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-2.193e+00	0.5620	4371.0	21.86%	10536.7	21.43%
WRKY26(WRKY)/colamp-WRKY26-DAP-Seq(GSE60143)/Homer	CGTTGACTWDKN	1e0	-2.179e+00	0.5667	761.0	3.81%	1775.5	3.61%
At5g22890(C2H2)/col-At5g22890-DAP-Seq(GSE60143)/Homer	NSAGGTKWTATCTGD	1e0	-2.168e+00	0.5702	54.0	0.27%	107.7	0.22%
LEP(AP2EREBP)/col-LEP-DAP-Seq(GSE60143)/Homer	CDCCGCCGTC	1e0	-2.150e+00	0.5771	262.0	1.31%	588.9	1.20%
WRKY8(WRKY)/colamp-WRKY8-DAP-Seq(GSE60143)/Homer	CGTTGACTTT	1e0	-2.147e+00	0.5771	192.0	0.96%	424.8	0.86%
AT4G00250(GeBP)/col-AT4G00250-DAP-Seq(GSE60143)/Homer	WDTGGATAAKRT	1e0	-2.134e+00	0.5804	984.0	4.92%	2313.7	4.71%
GATA1(C2C2gata)/colamp-GATA1-DAP-Seq(GSE60143)/Homer	DDWWYYAGATCTRRW	1e0	-2.117e+00	0.5870	423.0	2.11%	970.5	1.97%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-2.116e+00	0.5870	30.0	0.15%	55.9	0.11%
AT1G28160(AP2EREBP)/colamp-AT1G28160-DAP-Seq(GSE60143)/Homer	GGCGGCGG	1e0	-2.104e+00	0.5886	1628.0	8.14%	3870.5	7.87%
ANAC042(NAC)/col-ANAC042-DAP-Seq(GSE60143)/Homer	CGTNDHNDHNACGKY	1e0	-2.091e+00	0.5936	343.0	1.71%	782.0	1.59%
At1g75490(AP2EREBP)/colamp-At1g75490-DAP-Seq(GSE60143)/Homer	CACCGMCT	1e0	-2.087e+00	0.5936	1573.0	7.87%	3738.8	7.60%
dof45(C2C2dof)/col-dof45-DAP-Seq(GSE60143)/Homer	NVAWAAAGTN	1e0	-2.070e+00	0.5998	4923.0	24.62%	11897.5	24.20%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-2.063e+00	0.6006	3710.0	18.55%	8936.5	18.18%
ZIM(C2C2gata)/col-ZIM-DAP-Seq(GSE60143)/Homer	ATCSRACGGTYRAGA	1e0	-2.057e+00	0.6012	11.0	0.06%	16.2	0.03%
TRP2(MYBrelated)/colamp-TRP2-DAP-Seq(GSE60143)/Homer	TAAACCCT	1e0	-2.025e+00	0.6177	230.0	1.15%	517.0	1.05%
At1g74840(MYBrelated)/col100-At1g74840-DAP-Seq(GSE60143)/Homer	YHTTATCCAWWT	1e0	-1.985e+00	0.6397	1276.0	6.38%	3026.7	6.16%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-1.985e+00	0.6397	1656.0	8.28%	3946.2	8.03%
At4g31060(AP2EREBP)/colamp-At4g31060-DAP-Seq(GSE60143)/Homer	CACCGACAAW	1e0	-1.979e+00	0.6397	249.0	1.24%	562.3	1.14%
Adof1(C2C2dof)/col-Adof1-DAP-Seq(GSE60143)/Homer	NRWAAAGYDV	1e0	-1.954e+00	0.6499	5247.0	26.24%	12702.2	25.84%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	-1.939e+00	0.6568	6.0	0.03%	7.7	0.02%
SPL3(SBP)/colamp-SPL3-DAP-Seq(GSE60143)/Homer	WDTTGTACGGAH	1e0	-1.882e+00	0.6914	30.0	0.15%	57.6	0.12%
AGL63(MADS)/col-AGL63-DAP-Seq(GSE60143)/Homer	TTCCAAWWWTGG	1e0	-1.868e+00	0.6979	1306.0	6.53%	3106.9	6.32%
GT1(Trihelix)/col-GT1-DAP-Seq(GSE60143)/Homer	TTAACCATGGTTAAD	1e0	-1.862e+00	0.6987	23.0	0.11%	42.4	0.09%
WRKY40(WRKY)/colamp-WRKY40-DAP-Seq(GSE60143)/Homer	AHWAGTCAAC	1e0	-1.843e+00	0.7089	890.0	4.45%	2102.5	4.28%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-1.825e+00	0.7181	3290.0	16.45%	7935.7	16.14%
CAMTA1(CAMTA)/col-CAMTA1-DAP-Seq(GSE60143)/Homer	WWAACGCGTT	1e0	-1.821e+00	0.7181	320.0	1.60%	735.8	1.50%
RAP26(AP2EREBP)/colamp-RAP26-DAP-Seq(GSE60143)/Homer	HDATGGCGGCGG	1e0	-1.814e+00	0.7192	961.0	4.81%	2275.1	4.63%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-1.812e+00	0.7192	239.0	1.20%	543.7	1.11%
WRKY24(WRKY)/colamp-WRKY24-DAP-Seq(GSE60143)/Homer	CGTTGACTWW	1e0	-1.773e+00	0.7423	1310.0	6.55%	3122.9	6.35%
CUC1(NAC)/col-CUC1-DAP-Seq(GSE60143)/Homer	TACTTGTNNNACAAG	1e0	-1.755e+00	0.7518	463.0	2.31%	1079.8	2.20%
HLH-1(bHLH)/cElegans-Embryo-HLH1-ChIP-Seq(modEncode)/Homer	RACAGCTGTTBH	1e0	-1.753e+00	0.7518	1314.0	6.57%	3133.8	6.37%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e0	-1.752e+00	0.7518	1579.0	7.90%	3776.0	7.68%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-1.727e+00	0.7626	722.0	3.61%	1703.2	3.46%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e0	-1.718e+00	0.7662	2449.0	12.25%	5895.5	11.99%
HDG7(HB)/col-HDG7-DAP-Seq(GSE60143)/Homer	WGCATTTAATGC	1e0	-1.705e+00	0.7726	236.0	1.18%	539.7	1.10%
PUCHI(AP2EREBP)/colamp-PUCHI-DAP-Seq(GSE60143)/Homer	GCGCCGTY	1e0	-1.702e+00	0.7726	572.0	2.86%	1343.7	2.73%
DPL-1(E2F)/cElegans-Adult-ChIP-Seq(modEncode)/Homer	TAGCGCGC	1e0	-1.701e+00	0.7726	692.0	3.46%	1632.3	3.32%
ERF8(AP2EREBP)/colamp-ERF8-DAP-Seq(GSE60143)/Homer	CGCCGYCATW	1e0	-1.696e+00	0.7726	827.0	4.13%	1958.7	3.98%
BPC6(BBRBPC)/col-BPC6-DAP-Seq(GSE60143)/Homer	YTYTCTCTCTCTCTA	1e0	-1.696e+00	0.7726	91.0	0.46%	198.3	0.40%
BPC1(BBRBPC)/colamp-BPC1-DAP-Seq(GSE60143)/Homer	GARGAGAGAGAA	1e0	-1.694e+00	0.7726	1080.0	5.40%	2570.4	5.23%
ELT-3(Gata)/cElegans-L1-ELT3-ChIP-Seq(modEncode)/Homer	AWTGATAAGA	1e0	-1.681e+00	0.7726	1168.0	5.84%	2784.7	5.66%
At4g18890(BZR)/col-At4g18890-DAP-Seq(GSE60143)/Homer	NDBRCACGTGYR	1e0	-1.681e+00	0.7726	166.0	0.83%	374.7	0.76%
EIN3(EIL)/col-EIN3-DAP-Seq(GSE60143)/Homer	ARATTCAATGWATYT	1e0	-1.680e+00	0.7726	199.0	1.00%	452.3	0.92%
At2g41835(C2H2)/col-At2g41835-DAP-Seq(GSE60143)/Homer	TTTGAAAA	1e0	-1.634e+00	0.7960	833.0	4.17%	1976.8	4.02%
ANAC075(NAC)/col-ANAC075-DAP-Seq(GSE60143)/Homer	CTTSWWNWWSAAGYT	1e0	-1.622e+00	0.8023	346.0	1.73%	804.0	1.64%
ANAC057(NAC)/colamp-ANAC057-DAP-Seq(GSE60143)/Homer	DVCKTGNNNNNCAMG	1e0	-1.621e+00	0.8023	812.0	4.06%	1926.5	3.92%
MYB70(MYB)/col-MYB70-DAP-Seq(GSE60143)/Homer	WTAACNGTTA	1e0	-1.619e+00	0.8023	2713.0	13.56%	6548.4	13.32%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e0	-1.609e+00	0.8023	1635.0	8.18%	3923.2	7.98%
AT1G24250(Orphan)/col-AT1G24250-DAP-Seq(GSE60143)/Homer	KTDGTTGGTDGTTGG	1e0	-1.606e+00	0.8023	415.0	2.08%	970.9	1.97%
REM16(ABI3VP1)/col-REM16-DAP-Seq(GSE60143)/Homer	DTTTTTSCCGSMAAA	1e0	-1.597e+00	0.8048	2.0	0.01%	1.4	0.00%
MYB73(MYB)/col-MYB73-DAP-Seq(GSE60143)/Homer	NNNNHAACNGHHDHN	1e0	-1.595e+00	0.8048	3552.0	17.76%	8599.8	17.49%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-1.586e+00	0.8065	423.0	2.11%	990.2	2.01%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-1.581e+00	0.8071	415.0	2.08%	971.0	1.98%
AT1G01250(AP2EREBP)/col-AT1G01250-DAP-Seq(GSE60143)/Homer	YCACCGACAHTW	1e0	-1.568e+00	0.8147	52.0	0.26%	110.4	0.22%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-1.561e+00	0.8169	1029.0	5.15%	2456.0	5.00%
MYB44(MYB)/colamp-MYB44-DAP-Seq(GSE60143)/Homer	CVGTTWWKTCNGTTA	1e0	-1.557e+00	0.8169	104.0	0.52%	231.2	0.47%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-1.533e+00	0.8326	238.0	1.19%	549.4	1.12%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e0	-1.526e+00	0.8349	2968.0	14.84%	7180.0	14.60%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-1.525e+00	0.8349	136.0	0.68%	307.1	0.62%
OBP1(C2C2dof)/col-OBP1-DAP-Seq(GSE60143)/Homer	NHHACTTTWT	1e0	-1.516e+00	0.8367	5436.0	27.18%	13219.7	26.89%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-1.511e+00	0.8371	197.0	0.98%	452.2	0.92%
HSF21(HSF)/col-HSF21-DAP-Seq(GSE60143)/Homer	CTTCTAGAAGMTTYW	1e0	-1.505e+00	0.8388	35.0	0.18%	72.2	0.15%
DREF/Drosophila-Promoters/Homer	AVYTATCGATAD	1e0	-1.501e+00	0.8388	18.0	0.09%	34.6	0.07%
WRKY75(WRKY)/col-WRKY75-DAP-Seq(GSE60143)/Homer	CGTTGACTWW	1e0	-1.497e+00	0.8388	1450.0	7.25%	3482.8	7.08%
WRKY21(WRKY)/colamp-WRKY21-DAP-Seq(GSE60143)/Homer	DCGTTGACTTTT	1e0	-1.492e+00	0.8400	142.0	0.71%	322.7	0.66%
WRKY50(WRKY)/col-WRKY50-DAP-Seq(GSE60143)/Homer	NNTTGACTWNNGNNN	1e0	-1.488e+00	0.8400	1506.0	7.53%	3619.1	7.36%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e0	-1.477e+00	0.8458	792.0	3.96%	1886.6	3.84%
MYB94(MYB)/col-MYB94-DAP-Seq(GSE60143)/Homer	WGGTRGTTGGKA	1e0	-1.471e+00	0.8474	511.0	2.56%	1207.1	2.46%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-1.456e+00	0.8562	1675.0	8.38%	4033.7	8.20%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e0	-1.454e+00	0.8562	5905.0	29.53%	14377.1	29.24%
AT3G25990(Trihelix)/colamp-AT3G25990-DAP-Seq(GSE60143)/Homer	TTAACCATAG	1e0	-1.442e+00	0.8616	1148.0	5.74%	2752.4	5.60%
BAM8(BES1)/col-BAM8-DAP-Seq(GSE60143)/Homer	NNWSACACGTGTSWN	1e0	-1.437e+00	0.8622	122.0	0.61%	276.7	0.56%
ANAC045(NAC)/col-ANAC045-DAP-Seq(GSE60143)/Homer	DNCKTVNNNNNNAMG	1e0	-1.435e+00	0.8622	2636.0	13.18%	6379.8	12.98%
KAN2(G2like)/colamp-KAN2-DAP-Seq(GSE60143)/Homer	ATATTCTY	1e0	-1.434e+00	0.8622	2366.0	11.83%	5720.9	11.64%
JKD(C2H2)/col-JKD-DAP-Seq(GSE60143)/Homer	TTTTGTCGTTTT	1e0	-1.418e+00	0.8687	319.0	1.59%	747.7	1.52%
WRKY22(WRKY)/colamp-WRKY22-DAP-Seq(GSE60143)/Homer	WWAAAGTCAACK	1e0	-1.411e+00	0.8716	865.0	4.32%	2067.5	4.21%
RAV1(RAV)/colamp-RAV1-DAP-Seq(GSE60143)/Homer	TWWTTTCTGTTG	1e0	-1.396e+00	0.8815	1205.0	6.02%	2894.8	5.89%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-1.393e+00	0.8815	1449.0	7.25%	3488.7	7.10%
WRKY20(WRKY)/col-WRKY20-DAP-Seq(GSE60143)/Homer	CKTTGACYWD	1e0	-1.385e+00	0.8845	1122.0	5.61%	2693.1	5.48%
MYB61(MYB)/colamp-MYB61-DAP-Seq(GSE60143)/Homer	HCYACCTACC	1e0	-1.379e+00	0.8865	1956.0	9.78%	4725.8	9.61%
PLT1(AP2EREBP)/colamp-PLT1-DAP-Seq(GSE60143)/Homer	GCACGAWTYCCGAGG	1e0	-1.368e+00	0.8930	90.0	0.45%	202.4	0.41%
WUS1(Homeobox)/colamp-WUS1-DAP-Seq(GSE60143)/Homer	CAWTCATTCA	1e0	-1.348e+00	0.9071	750.0	3.75%	1792.4	3.65%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e0	-1.347e+00	0.9071	1621.0	8.11%	3911.9	7.96%
EGL-5(Homeobox)/cElegans-L3-EGL5-ChIP-Seq(modEncode)/Homer	ATTTAATGGG	1e0	-1.345e+00	0.9071	2232.0	11.16%	5402.4	10.99%
SeqBias: GA-repeat	GAGAGAGAGA	1e0	-1.339e+00	0.9071	11753.0	58.77%	28759.7	58.50%
GATA11(C2C2gata)/col-GATA11-DAP-Seq(GSE60143)/Homer	DDHYYAGATCTR	1e0	-1.331e+00	0.9088	492.0	2.46%	1168.9	2.38%
Knotted(Homeobox)/Corn-KN1-ChIP-Seq(GSE39161)/Homer	GAYGNGACRGGN	1e0	-1.330e+00	0.9088	1818.0	9.09%	4393.8	8.94%
ERF105(AP2EREBP)/colamp-ERF105-DAP-Seq(GSE60143)/Homer	TGGCGGCT	1e0	-1.330e+00	0.9088	1329.0	6.64%	3201.3	6.51%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-1.327e+00	0.9088	1514.0	7.57%	3652.0	7.43%
CRC(C2C2YABBY)/col-CRC-DAP-Seq(GSE60143)/Homer	TWATSATA	1e0	-1.306e+00	0.9182	2094.0	10.47%	5069.8	10.31%
At5g62940(C2C2dof)/col-At5g62940-DAP-Seq(GSE60143)/Homer	WHWHHACTTTTT	1e0	-1.297e+00	0.9231	6580.0	32.90%	16056.2	32.66%
MYB39(MYB)/col-MYB39-DAP-Seq(GSE60143)/Homer	WWAARKTAGGTGRAA	1e0	-1.294e+00	0.9231	175.0	0.88%	406.5	0.83%
ASHR1(ND)/col-ASHR1-DAP-Seq(GSE60143)/Homer	NTGGTGAN	1e0	-1.293e+00	0.9231	1878.0	9.39%	4543.4	9.24%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e0	-1.284e+00	0.9251	57.0	0.29%	126.8	0.26%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-1.283e+00	0.9251	1667.0	8.33%	4029.0	8.20%
SeqBias: polyC-repeat	CCCCCCCCCC	1e0	-1.283e+00	0.9251	19373.0	96.86%	47576.3	96.77%
GATA6(C2C2gata)/col200-GATA6-DAP-Seq(GSE60143)/Homer	TAGATCTARAHH	1e0	-1.278e+00	0.9251	143.0	0.71%	330.2	0.67%
At5g52660(MYBrelated)/colamp-At5g52660-DAP-Seq(GSE60143)/Homer	HAAAAATATCTW	1e0	-1.277e+00	0.9251	653.0	3.26%	1561.0	3.18%
ANAC092(NAC)/colamp-ANAC092-DAP-Seq(GSE60143)/Homer	WRCKTGWNNNWCAMG	1e0	-1.277e+00	0.9251	397.0	1.98%	941.1	1.91%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-1.276e+00	0.9251	509.0	2.54%	1212.7	2.47%
TF3A(C2H2)/col-TF3A-DAP-Seq(GSE60143)/Homer	NNDDGAGGAGGWNNN	1e0	-1.273e+00	0.9251	2215.0	11.07%	5368.2	10.92%
MYB27(MYB)/colamp-MYB27-DAP-Seq(GSE60143)/Homer	TACCTAACWT	1e0	-1.272e+00	0.9251	201.0	1.00%	469.7	0.96%
ATHB6(Homeobox)/col-ATHB6-DAP-Seq(GSE60143)/Homer	AATGATTG	1e0	-1.267e+00	0.9251	1999.0	9.99%	4841.0	9.85%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e0	-1.261e+00	0.9251	284.0	1.42%	669.3	1.36%
At4g28140(AP2EREBP)/colamp-At4g28140-DAP-Seq(GSE60143)/Homer	DCCACCGACCAW	1e0	-1.261e+00	0.9251	185.0	0.92%	431.9	0.88%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-1.256e+00	0.9251	97.0	0.48%	221.9	0.45%
dof24(C2C2dof)/col-dof24-DAP-Seq(GSE60143)/Homer	TWMCTTTTTG	1e0	-1.254e+00	0.9251	3696.0	18.48%	8993.9	18.29%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e0	-1.248e+00	0.9251	1473.0	7.36%	3559.1	7.24%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-1.242e+00	0.9251	176.0	0.88%	410.6	0.84%
WRKY71(WRKY)/col-WRKY71-DAP-Seq(GSE60143)/Homer	CKTTGACYWW	1e0	-1.239e+00	0.9251	1172.0	5.86%	2826.4	5.75%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e0	-1.217e+00	0.9314	316.0	1.58%	748.9	1.52%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-1.213e+00	0.9327	151.0	0.76%	351.5	0.72%
MGP(C2H2)/colamp-MGP-DAP-Seq(GSE60143)/Homer	TTTTGTCGTTTW	1e0	-1.208e+00	0.9341	382.0	1.91%	908.1	1.85%
WRKY31(WRKY)/colamp-WRKY31-DAP-Seq(GSE60143)/Homer	NCGTTGACTWWK	1e0	-1.188e+00	0.9492	1062.0	5.31%	2562.3	5.21%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-1.179e+00	0.9546	161.0	0.80%	376.4	0.77%
AT5G23930(mTERF)/col-AT5G23930-DAP-Seq(GSE60143)/Homer	GGCGGCTG	1e0	-1.177e+00	0.9546	1935.0	9.68%	4694.5	9.55%
At1g72010(TCP)/colamp-At1g72010-DAP-Seq(GSE60143)/Homer	GGDCCCAC	1e0	-1.173e+00	0.9546	531.0	2.66%	1271.2	2.59%
AT1G71450(AP2EREBP)/col-AT1G71450-DAP-Seq(GSE60143)/Homer	DHDWTGTCGGTG	1e0	-1.166e+00	0.9580	1181.0	5.91%	2854.9	5.81%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e0	-1.165e+00	0.9580	824.0	4.12%	1984.5	4.04%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e0	-1.165e+00	0.9580	2822.0	14.11%	6865.1	13.96%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e0	-1.162e+00	0.9580	2450.0	12.25%	5955.9	12.11%
Initiator/Drosophila-Promoters/Homer	NTCAGTYG	1e0	-1.162e+00	0.9580	3839.0	19.20%	9356.9	19.03%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e0	-1.156e+00	0.9580	631.0	3.16%	1516.0	3.08%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-1.155e+00	0.9580	1081.0	5.41%	2612.0	5.31%
SPL13(SBP)/col-SPL13-DAP-Seq(GSE60143)/Homer	WAHTGTACGGAH	1e0	-1.149e+00	0.9580	64.0	0.32%	145.8	0.30%
DEAR5(AP2EREBP)/col-DEAR5-DAP-Seq(GSE60143)/Homer	NDWTGTCGGTGRWDN	1e0	-1.133e+00	0.9639	92.0	0.46%	213.0	0.43%
MYB93(MYB)/colamp-MYB93-DAP-Seq(GSE60143)/Homer	GGTAGGTGRD	1e0	-1.114e+00	0.9792	1526.0	7.63%	3701.8	7.53%
MS188(MYB)/colamp-MS188-DAP-Seq(GSE60143)/Homer	WARKTAGGTRRA	1e0	-1.113e+00	0.9792	1023.0	5.12%	2474.0	5.03%
ERF7(AP2EREBP)/col-ERF7-DAP-Seq(GSE60143)/Homer	ATGRCGGCGG	1e0	-1.108e+00	0.9792	1079.0	5.39%	2610.6	5.31%
SPL1(SBP)/colamp-SPL1-DAP-Seq(GSE60143)/Homer	HYGTACDTWH	1e0	-1.103e+00	0.9806	2434.0	12.17%	5923.3	12.05%
WRKY11(WRKY)/col-WRKY11-DAP-Seq(GSE60143)/Homer	SCGTTGACTTTN	1e0	-1.100e+00	0.9806	167.0	0.83%	393.7	0.80%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e0	-1.075e+00	1.0000	1373.0	6.87%	3331.1	6.78%
ATHB53(HB)/col-ATHB53-DAP-Seq(GSE60143)/Homer	CAATAATT	1e0	-1.069e+00	1.0000	696.0	3.48%	1679.5	3.42%
TSO1(CPP)/col-TSO1-DAP-Seq(GSE60143)/Homer	RAATTTRAAW	1e0	-1.061e+00	1.0000	207.0	1.03%	491.7	1.00%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e0	-1.051e+00	1.0000	848.0	4.24%	2051.5	4.17%
At1g25550(G2like)/colamp-At1g25550-DAP-Seq(GSE60143)/Homer	NAGATTCY	1e0	-1.049e+00	1.0000	1628.0	8.14%	3957.9	8.05%
LBD13(LOBAS2)/colamp-LBD13-DAP-Seq(GSE60143)/Homer	KCCGTNWTTTBCGGC	1e0	-1.044e+00	1.0000	692.0	3.46%	1671.5	3.40%
AT2G33550(Trihelix)/colamp-AT2G33550-DAP-Seq(GSE60143)/Homer	TTTAAGGGCAYTTTT	1e0	-1.040e+00	1.0000	3520.0	17.60%	8592.6	17.48%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-1.030e+00	1.0000	456.0	2.28%	1097.3	2.23%
At5g18450(AP2EREBP)/col-At5g18450-DAP-Seq(GSE60143)/Homer	CACCGCTT	1e0	-1.022e+00	1.0000	1599.0	7.99%	3889.1	7.91%
caudal(Homeobox)/Drosophila-Embryos-ChIP-Chip(modEncode)/Homer	GGYCATAAAW	1e0	-1.022e+00	1.0000	1213.0	6.07%	2945.3	5.99%
At1g68670(G2like)/colamp-At1g68670-DAP-Seq(GSE60143)/Homer	WNWWHNRAAGATTCT	1e0	-1.021e+00	1.0000	686.0	3.43%	1658.5	3.37%
At4g01280(MYBrelated)/colamp-At4g01280-DAP-Seq(GSE60143)/Homer	AAATATCT	1e0	-1.020e+00	1.0000	804.0	4.02%	1946.4	3.96%
At3g60580(C2H2)/col-At3g60580-DAP-Seq(GSE60143)/Homer	WTTYTACT	1e0	-1.020e+00	1.0000	9754.0	48.77%	23901.9	48.62%
SGR5(C2H2)/colamp-SGR5-DAP-Seq(GSE60143)/Homer	TTTGTCTTTTTT	1e0	-1.019e+00	1.0000	1235.0	6.17%	2999.1	6.10%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e0	-1.009e+00	1.0000	1199.0	6.00%	2912.3	5.92%
AT1G69570(C2C2dof)/col-AT1G69570-DAP-Seq(GSE60143)/Homer	WAAAAGTGHH	1e0	-1.005e+00	1.0000	2115.0	10.57%	5154.4	10.48%
TATA-box/Drosophila-Promoters/Homer	CTATAAAAGCSV	1e0	-1.004e+00	1.0000	69.0	0.34%	160.1	0.33%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-1.004e+00	1.0000	2306.0	11.53%	5622.8	11.44%
ATY19(MYB)/col-ATY19-DAP-Seq(GSE60143)/Homer	YYCACCWACCAT	1e0	-9.990e-01	1.0000	850.0	4.25%	2060.5	4.19%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-9.974e-01	1.0000	408.0	2.04%	982.9	2.00%
At3g24120(G2like)/col-At3g24120-DAP-Seq(GSE60143)/Homer	NWWAGMATMW	1e0	-9.969e-01	1.0000	5125.0	25.62%	12536.6	25.50%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-9.945e-01	1.0000	1187.0	5.93%	2884.4	5.87%
WRKY65(WRKY)/colamp-WRKY65-DAP-Seq(GSE60143)/Homer	AWWWAGTCAACG	1e0	-9.916e-01	1.0000	697.0	3.48%	1687.1	3.43%
WRKY6(WRKY)/colamp-WRKY6-DAP-Seq(GSE60143)/Homer	NCGTTGACTWWD	1e0	-9.900e-01	1.0000	1287.0	6.44%	3129.3	6.37%
GATA4(C2C2gata)/col-GATA4-DAP-Seq(GSE60143)/Homer	DDWTYAGATCTR	1e0	-9.860e-01	1.0000	764.0	3.82%	1851.3	3.77%
AT5G02460(C2C2dof)/col-AT5G02460-DAP-Seq(GSE60143)/Homer	CHCCTTTT	1e0	-9.853e-01	1.0000	4173.0	20.87%	10202.7	20.75%
ANAC013(NAC)/col-ANAC013-DAP-Seq(GSE60143)/Homer	CTTGNNNNNCAAGNA	1e0	-9.842e-01	1.0000	459.0	2.30%	1107.9	2.25%
HAT2(Homeobox)/colamp-HAT2-DAP-Seq(GSE60143)/Homer	CYAATSATTR	1e0	-9.777e-01	1.0000	1338.0	6.69%	3255.3	6.62%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-9.764e-01	1.0000	2682.0	13.41%	6547.4	13.32%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-9.720e-01	1.0000	827.0	4.13%	2006.4	4.08%
ATHB21(HB)/colamp-ATHB21-DAP-Seq(GSE60143)/Homer	YCAATWAT	1e0	-9.660e-01	1.0000	704.0	3.52%	1706.9	3.47%
MYB121(MYB)/col-MYB121-DAP-Seq(GSE60143)/Homer	YNTACCTAACWW	1e0	-9.581e-01	1.0000	412.0	2.06%	994.5	2.02%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-9.501e-01	1.0000	1354.0	6.77%	3297.1	6.71%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-9.468e-01	1.0000	1170.0	5.85%	2847.2	5.79%
At1g36060(AP2EREBP)/colamp-At1g36060-DAP-Seq(GSE60143)/Homer	NNWWKGTCGGTG	1e0	-9.455e-01	1.0000	424.0	2.12%	1024.8	2.08%
PABPC1(?)/MEL-PABC1-CLIP-Seq(GSE69755)/Homer	HAATAAAGNN	1e0	-9.452e-01	1.0000	3066.0	15.33%	7493.9	15.24%
SeqBias: A/T bias	WWWWWWWWWW	1e0	-9.445e-01	1.0000	16676.0	83.38%	40946.7	83.29%
Trl(Zf)/S2-GAGAfactor-ChIP-Seq(GSE40646)/Homer	RGAGAGAG	1e0	-9.438e-01	1.0000	4226.0	21.13%	10339.7	21.03%
ANAC079(NAC)/colamp-ANAC079-DAP-Seq(GSE60143)/Homer	TACACGCAACCT	1e0	-9.359e-01	1.0000	450.0	2.25%	1088.5	2.21%
GAGA-repeat/SacCer-Promoters/Homer	CTYTCTYTCTCTCTC	1e0	-9.358e-01	1.0000	7593.0	37.96%	18608.8	37.85%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-9.340e-01	1.0000	452.0	2.26%	1093.5	2.22%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e0	-9.241e-01	1.0000	5217.0	26.09%	12775.4	25.99%
LBD2(LOBAS2)/colamp-LBD2-DAP-Seq(GSE60143)/Homer	TCCGAWTTTTTCGGN	1e0	-9.232e-01	1.0000	215.0	1.07%	516.8	1.05%
At5g65130(AP2EREBP)/colamp-At5g65130-DAP-Seq(GSE60143)/Homer	CCRCCGACAWTN	1e0	-9.208e-01	1.0000	138.0	0.69%	329.7	0.67%
Unknown1/Arabidopsis-Promoters/Homer	RGGGTAWWWTHGTAA	1e0	-9.088e-01	1.0000	130.0	0.65%	310.9	0.63%
bHLH157(bHLH)/col-bHLH157-DAP-Seq(GSE60143)/Homer	KACACGTCTCTY	1e0	-9.054e-01	1.0000	204.0	1.02%	491.0	1.00%
GEI-11(Myb?)/cElegans-L4-GEI11-ChIP-Seq(modEncode)/Homer	CCGACAYYTYACGGG	1e0	-8.981e-01	1.0000	41.0	0.21%	95.4	0.19%
LIN-39(Homeobox)/cElegans.L3-LIN39-ChIP-Seq(modEncode)/Homer	ATGATTRATG	1e0	-8.967e-01	1.0000	1936.0	9.68%	4729.7	9.62%
ATHB6(Homeobox)/Arabidopsis-HB6-ChIP-Seq(GSE80564)/Homer	CAATNATTBN	1e0	-8.967e-01	1.0000	1150.0	5.75%	2803.5	5.70%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-8.956e-01	1.0000	5789.0	28.95%	14185.4	28.85%
WRKY14(WRKY)/colamp-WRKY14-DAP-Seq(GSE60143)/Homer	NCGTTGACTTTN	1e0	-8.952e-01	1.0000	750.0	3.75%	1825.0	3.71%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e0	-8.878e-01	1.0000	1712.0	8.56%	4181.1	8.50%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-8.864e-01	1.0000	273.0	1.36%	659.4	1.34%
CDF3(C2C2dof)/colamp-CDF3-DAP-Seq(GSE60143)/Homer	AAAAGTRM	1e0	-8.816e-01	1.0000	3289.0	16.45%	8050.9	16.38%
SOC1(MADS)/Seedling-SOC1-ChIP-Seq(GSE45846)/Homer	TWCCAWWTWTGG	1e0	-8.769e-01	1.0000	563.0	2.81%	1369.0	2.78%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-8.766e-01	1.0000	240.0	1.20%	579.2	1.18%
MYB81(MYB)/col-MYB81-DAP-Seq(GSE60143)/Homer	NWAACSGWTWNN	1e0	-8.711e-01	1.0000	2536.0	12.68%	6204.8	12.62%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-8.702e-01	1.0000	1064.0	5.32%	2595.3	5.28%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-8.656e-01	1.0000	1123.0	5.62%	2740.8	5.58%
AT2G31460(REMB3)/col-AT2G31460-DAP-Seq(GSE60143)/Homer	WNWARWDGAAATGAT	1e0	-8.617e-01	1.0000	612.0	3.06%	1489.8	3.03%
WRKY29(WRKY)/colamp-WRKY29-DAP-Seq(GSE60143)/Homer	MGTTGACTTT	1e0	-8.617e-01	1.0000	1581.0	7.90%	3863.7	7.86%
MYB40(MYB)/col-MYB40-DAP-Seq(GSE60143)/Homer	TGGTAGGTRARA	1e0	-8.535e-01	1.0000	400.0	2.00%	971.8	1.98%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-8.483e-01	1.0000	53.0	0.27%	126.0	0.26%
SPL15(SBP)/colamp-SPL15-DAP-Seq(GSE60143)/Homer	WDWMMGTACADW	1e0	-8.359e-01	1.0000	1828.0	9.14%	4472.9	9.10%
AT5G25475(ABI3VP1)/col-AT5G25475-DAP-Seq(GSE60143)/Homer	RNNRNCAAGCADNDB	1e0	-8.337e-01	1.0000	1706.0	8.53%	4173.5	8.49%
At3g04030(G2like)/col-At3g04030-DAP-Seq(GSE60143)/Homer	DRGAATCT	1e0	-8.208e-01	1.0000	1389.0	6.94%	3397.9	6.91%
LBD18(LOBAS2)/colamp-LBD18-DAP-Seq(GSE60143)/Homer	CKGAWWTTCHGS	1e0	-8.133e-01	1.0000	3940.0	19.70%	9661.0	19.65%
WRKY55(WRKY)/col-WRKY55-DAP-Seq(GSE60143)/Homer	NCGTTGACTT	1e0	-8.127e-01	1.0000	1775.0	8.88%	4345.1	8.84%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-8.092e-01	1.0000	156.0	0.78%	377.8	0.77%
ATHB40(HB)/col-ATHB40-DAP-Seq(GSE60143)/Homer	HCAATWATTG	1e0	-8.065e-01	1.0000	1116.0	5.58%	2729.9	5.55%
TCP20(TCP)/col-TCP20-DAP-Seq(GSE60143)/Homer	GGDCCCAC	1e0	-8.026e-01	1.0000	395.0	1.98%	962.2	1.96%
AT1G72740(MYBrelated)/colamp-AT1G72740-DAP-Seq(GSE60143)/Homer	NNWWAMCCTAAHWNN	1e0	-8.011e-01	1.0000	1439.0	7.20%	3522.2	7.16%
AT2G28810(C2C2dof)/colamp-AT2G28810-DAP-Seq(GSE60143)/Homer	VAAAAAGTWA	1e0	-7.944e-01	1.0000	4386.0	21.93%	10759.0	21.88%
At1g19210(AP2EREBP)/colamp-At1g19210-DAP-Seq(GSE60143)/Homer	HCACCGACCAHN	1e0	-7.919e-01	1.0000	936.0	4.68%	2289.3	4.66%
ERF115(AP2EREBP)/colamp-ERF115-DAP-Seq(GSE60143)/Homer	WTKRCGGCGB	1e0	-7.915e-01	1.0000	1269.0	6.35%	3106.3	6.32%
PCF/Arabidopsis-Promoters/Homer	NNWWWTGGGCYTDDN	1e0	-7.894e-01	1.0000	284.0	1.42%	691.9	1.41%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	-7.781e-01	1.0000	1281.0	6.40%	3137.7	6.38%
MYB17(MYB)/colamp-MYB17-DAP-Seq(GSE60143)/Homer	GGTAGGTGRG	1e0	-7.771e-01	1.0000	637.0	3.19%	1557.9	3.17%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e0	-7.761e-01	1.0000	90.0	0.45%	217.3	0.44%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e0	-7.730e-01	1.0000	912.0	4.56%	2232.1	4.54%
MYB55(MYB)/colamp-MYB55-DAP-Seq(GSE60143)/Homer	YACCWAMC	1e0	-7.652e-01	1.0000	1370.0	6.85%	3357.5	6.83%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	-7.535e-01	1.0000	3379.0	16.89%	8293.5	16.87%
MYB65(MYB)/colamp-MYB65-DAP-Seq(GSE60143)/Homer	RACNGTTA	1e0	-7.482e-01	1.0000	1951.0	9.75%	4786.6	9.74%
MYB57(MYB)/col-MYB57-DAP-Seq(GSE60143)/Homer	TTACCTAACT	1e0	-7.481e-01	1.0000	658.0	3.29%	1611.2	3.28%
At3g12730(G2like)/colamp-At3g12730-DAP-Seq(GSE60143)/Homer	AAGATTCT	1e0	-7.434e-01	1.0000	2208.0	11.04%	5418.9	11.02%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-7.391e-01	1.0000	1091.0	5.46%	2675.3	5.44%
AT3G10580(MYBrelated)/colamp-AT3G10580-DAP-Seq(GSE60143)/Homer	TACCTAACWNHW	1e0	-7.301e-01	1.0000	514.0	2.57%	1259.1	2.56%
EFL-1(E2F)/cElegans-L1-EFL1-ChIP-Seq(modEncode)/Homer	TGCAARYGCGCTCYA	1e0	-7.214e-01	1.0000	15.0	0.07%	35.7	0.07%
AT1G49560(G2like)/colamp-AT1G49560-DAP-Seq(GSE60143)/Homer	GAWTCTNWDA	1e0	-7.197e-01	1.0000	1979.0	9.89%	4859.5	9.88%
SVP(MADS)/col-SVP-DAP-Seq(GSE60143)/Homer	ANTTWCCHAATTTGG	1e0	-7.197e-01	1.0000	819.0	4.09%	2009.2	4.09%
RVE1(MYBrelated)/col-RVE1-DAP-Seq(GSE60143)/Homer	AAATATCT	1e0	-7.177e-01	1.0000	812.0	4.06%	1992.0	4.05%
MYB92(MYB)/colamp-MYB92-DAP-Seq(GSE60143)/Homer	GGTAGGTR	1e0	-7.168e-01	1.0000	1173.0	5.87%	2879.1	5.86%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-7.126e-01	1.0000	408.0	2.04%	1000.7	2.04%
WRKY3(WRKY)/col-WRKY3-DAP-Seq(GSE60143)/Homer	NCKTTGACYDDN	1e0	-7.075e-01	1.0000	941.0	4.71%	2310.3	4.70%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-7.020e-01	1.0000	100.0	0.50%	245.0	0.50%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-6.965e-01	1.0000	3384.0	16.92%	8316.7	16.92%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-6.920e-01	1.0000	348.0	1.74%	854.3	1.74%
SRS7(SRS)/colamp-SRS7-DAP-Seq(GSE60143)/Homer	HATAGGTTTH	1e0	-6.884e-01	1.0000	4760.0	23.80%	11700.6	23.80%
HDG1(Homeobox)/col100-HDG1-DAP-Seq(GSE60143)/Homer	DDYAATTAATGH	1e0	-6.791e-01	1.0000	688.0	3.44%	1691.4	3.44%
Unknown5/Drosophila-Promoters/Homer	GCTGATAASV	1e0	-6.752e-01	1.0000	1186.0	5.93%	2916.2	5.93%
bHLH28(bHLH)/col-bHLH28-DAP-Seq(GSE60143)/Homer	NHHTGTACGGAH	1e0	-6.744e-01	1.0000	139.0	0.69%	341.0	0.69%
bHLH130(bHLH)/col-bHLH130-DAP-Seq(GSE60143)/Homer	GCAACTTG	1e0	-6.739e-01	1.0000	909.0	4.54%	2235.7	4.55%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-6.729e-01	1.0000	2105.0	10.53%	5176.8	10.53%
ATHB7(Homeobox)/col-ATHB7-DAP-Seq(GSE60143)/Homer	AATGATTG	1e0	-6.695e-01	1.0000	1093.0	5.46%	2688.5	5.47%
DEAR3(AP2EREBP)/colamp-DEAR3-DAP-Seq(GSE60143)/Homer	BCACCGACAWNNNNN	1e0	-6.676e-01	1.0000	173.0	0.86%	425.1	0.86%
Unknown1(NR/Ini-like)/Drosophila-Promoters/Homer	MYGGTCACACTG	1e0	-6.634e-01	1.0000	231.0	1.16%	568.6	1.16%
IDD7(C2H2)/col-IDD7-DAP-Seq(GSE60143)/Homer	TTTGTCKTTTTN	1e0	-6.612e-01	1.0000	656.0	3.28%	1614.2	3.28%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e0	-6.586e-01	1.0000	851.0	4.25%	2094.3	4.26%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-6.583e-01	1.0000	4331.0	21.65%	10652.7	21.67%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-6.551e-01	1.0000	3144.0	15.72%	7734.5	15.73%
ABF1/SacCer-Promoters/Homer	CGTRNAAARTGA	1e0	-6.503e-01	1.0000	169.0	0.84%	416.3	0.85%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-6.499e-01	1.0000	98.0	0.49%	241.8	0.49%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-6.495e-01	1.0000	736.0	3.68%	1812.1	3.69%
bHLH122(bHLH)/col100-bHLH122-DAP-Seq(GSE60143)/Homer	NDDCAASTTGHHNWW	1e0	-6.446e-01	1.0000	1056.0	5.28%	2600.1	5.29%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-6.265e-01	1.0000	476.0	2.38%	1174.1	2.39%
PQM-1(?)/cElegans-L3-ChIP-Seq(modEncode)/Homer	ACTGATAAGA	1e0	-6.234e-01	1.0000	1072.0	5.36%	2642.6	5.38%
bHLH80(bHLH)/col-bHLH80-DAP-Seq(GSE60143)/Homer	NNNNDCAASTTGHNN	1e0	-6.133e-01	1.0000	1251.0	6.25%	3084.3	6.27%
GATA20(C2C2gata)/colamp-GATA20-DAP-Seq(GSE60143)/Homer	TNGATCNDNM	1e0	-6.125e-01	1.0000	2591.0	12.96%	6382.6	12.98%
AT3G09735(S1Falike)/col-AT3G09735-DAP-Seq(GSE60143)/Homer	TTCTAGAANMTTCTA	1e0	-6.090e-01	1.0000	447.0	2.23%	1104.9	2.25%
ATHB25(ZFHD)/colamp-ATHB25-DAP-Seq(GSE60143)/Homer	TAATTAVB	1e0	-6.079e-01	1.0000	1897.0	9.49%	4675.1	9.51%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e0	-6.007e-01	1.0000	669.0	3.35%	1652.9	3.36%
MYB49(MYB)/col-MYB49-DAP-Seq(GSE60143)/Homer	ARKTAGGTRR	1e0	-5.985e-01	1.0000	1372.0	6.86%	3384.7	6.88%
At5g66730(C2H2)/colamp-At5g66730-DAP-Seq(GSE60143)/Homer	TTTGTCKTTTTK	1e0	-5.933e-01	1.0000	442.0	2.21%	1093.8	2.22%
At4g16750(AP2EREBP)/col-At4g16750-DAP-Seq(GSE60143)/Homer	HACCGACAHA	1e0	-5.909e-01	1.0000	433.0	2.17%	1071.8	2.18%
Tal1	CATCTG	1e0	-5.883e-01	1.0000	2375.0	11.88%	5855.9	11.91%
AT5G45580(G2like)/colamp-AT5G45580-DAP-Seq(GSE60143)/Homer	ADRGAATCTH	1e0	-5.841e-01	1.0000	2278.0	11.39%	5617.1	11.43%
BIM1(bHLH)/colamp-BIM1-DAP-Seq(GSE60143)/Homer	NNNNNNVTCACGTGM	1e0	-5.797e-01	1.0000	86.0	0.43%	214.3	0.44%
AT5G05550(Trihelix)/col-AT5G05550-DAP-Seq(GSE60143)/Homer	HDNHDTCKCCGGMGA	1e0	-5.735e-01	1.0000	1487.0	7.43%	3671.9	7.47%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-5.672e-01	1.0000	114.0	0.57%	284.2	0.58%
At5g08330(TCP)/col-At5g08330-DAP-Seq(GSE60143)/Homer	GGRCCCAC	1e0	-5.671e-01	1.0000	670.0	3.35%	1658.4	3.37%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-5.654e-01	1.0000	320.0	1.60%	794.0	1.62%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e0	-5.648e-01	1.0000	1648.0	8.24%	4069.8	8.28%
AGL25(MADS)/colamp-AGL25-DAP-Seq(GSE60143)/Homer	TTTCCATWTWTGGAA	1e0	-5.603e-01	1.0000	103.0	0.52%	257.3	0.52%
AT3G12130(C3H)/colamp-AT3G12130-DAP-Seq(GSE60143)/Homer	TMACTTTTTV	1e0	-5.591e-01	1.0000	4500.0	22.50%	11091.5	22.56%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	-5.568e-01	1.0000	5.0	0.03%	12.0	0.02%
AT1G76880(Trihelix)/col-AT1G76880-DAP-Seq(GSE60143)/Homer	ACGGTAAAAW	1e0	-5.558e-01	1.0000	614.0	3.07%	1521.5	3.09%
AT1G23810(Orphan)/col-AT1G23810-DAP-Seq(GSE60143)/Homer	TTCTAGAAGSTTCTA	1e0	-5.459e-01	1.0000	33.0	0.17%	83.8	0.17%
ANL2(HB)/col-ANL2-DAP-Seq(GSE60143)/Homer	CATTAATTGC	1e0	-5.391e-01	1.0000	672.0	3.36%	1666.1	3.39%
At2g33710(AP2EREBP)/colamp-At2g33710-DAP-Seq(GSE60143)/Homer	WTKGCGGCKR	1e0	-5.379e-01	1.0000	1634.0	8.17%	4039.3	8.22%
PHV(HB)/col-PHV-DAP-Seq(GSE60143)/Homer	RTAATSATTA	1e0	-5.325e-01	1.0000	562.0	2.81%	1395.7	2.84%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e0	-5.321e-01	1.0000	747.0	3.74%	1852.1	3.77%
At3g09600(MYBrelated)/colamp-At3g09600-DAP-Seq(GSE60143)/Homer	AAAATATCTT	1e0	-5.297e-01	1.0000	657.0	3.28%	1630.1	3.32%
AT1G76870(Trihelix)/col-AT1G76870-DAP-Seq(GSE60143)/Homer	AAAACCRGWW	1e0	-5.287e-01	1.0000	610.0	3.05%	1514.2	3.08%
RAP21(AP2EREBP)/colamp-RAP21-DAP-Seq(GSE60143)/Homer	BCACCGACAHNN	1e0	-5.263e-01	1.0000	104.0	0.52%	261.3	0.53%
At5g29000(G2like)/col-At5g29000-DAP-Seq(GSE60143)/Homer	RGAATATTCYHH	1e0	-5.242e-01	1.0000	328.0	1.64%	817.0	1.66%
REB1/SacCer-Promoters/Homer	KCCGGGTAAYRR	1e0	-5.226e-01	1.0000	190.0	0.95%	475.1	0.97%
MYB74(MYB)/colamp-MYB74-DAP-Seq(GSE60143)/Homer	YYYACCTACCWH	1e0	-5.219e-01	1.0000	704.0	3.52%	1747.8	3.56%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e0	-5.191e-01	1.0000	2098.0	10.49%	5186.1	10.55%
At1g78700(BZR)/col-At1g78700-DAP-Seq(GSE60143)/Homer	NNNNCACGTGNNNNN	1e0	-5.168e-01	1.0000	287.0	1.44%	716.9	1.46%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-5.148e-01	1.0000	1456.0	7.28%	3604.4	7.33%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-5.131e-01	1.0000	488.0	2.44%	1214.9	2.47%
ATHB5(HB)/colamp-ATHB5-DAP-Seq(GSE60143)/Homer	AATGATTG	1e0	-5.080e-01	1.0000	1430.0	7.15%	3541.7	7.20%
ANAC017(NAC)/colamp-ANAC017-DAP-Seq(GSE60143)/Homer	TMCTTGNNNNNCAAG	1e0	-5.060e-01	1.0000	84.0	0.42%	213.0	0.43%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e0	-5.021e-01	1.0000	1670.0	8.35%	4134.4	8.41%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-4.968e-01	1.0000	573.0	2.86%	1426.4	2.90%
MYB63(MYB)/col-MYB63-DAP-Seq(GSE60143)/Homer	BHYACCWACCHH	1e0	-4.951e-01	1.0000	541.0	2.71%	1347.8	2.74%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-4.945e-01	1.0000	91.0	0.46%	230.8	0.47%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-4.945e-01	1.0000	91.0	0.46%	230.8	0.47%
DREB2(AP2EREBP)/col-DREB2-DAP-Seq(GSE60143)/Homer	TMACCGACATWA	1e0	-4.884e-01	1.0000	270.0	1.35%	676.3	1.38%
WRKY17(WRKY)/colamp-WRKY17-DAP-Seq(GSE60143)/Homer	GCGTTGACTTTT	1e0	-4.864e-01	1.0000	7.0	0.03%	18.3	0.04%
KANADI1(Myb)/Seedling-KAN1-ChIP-Seq(GSE48081)/Homer	ARGAATAWWN	1e0	-4.761e-01	1.0000	1694.0	8.47%	4198.1	8.54%
ANAC087(NAC)/col-ANAC087-DAP-Seq(GSE60143)/Homer	WVCKTGHNNNWCAMG	1e0	-4.760e-01	1.0000	268.0	1.34%	672.6	1.37%
Unknown3/Arabidopsis-Promoters/Homer	AYTAAACCGG	1e0	-4.732e-01	1.0000	139.0	0.69%	351.5	0.72%
HSF3(HSF)/colamp-HSF3-DAP-Seq(GSE60143)/Homer	NTTCTAGAAKCTTCT	1e0	-4.698e-01	1.0000	1133.0	5.67%	2815.0	5.73%
WRKY43(WRKY)/colamp-WRKY43-DAP-Seq(GSE60143)/Homer	NCGTTGACTTTT	1e0	-4.681e-01	1.0000	516.0	2.58%	1288.5	2.62%
TCP1(TCP)/col-TCP1-DAP-Seq(GSE60143)/Homer	GGGGGCCCMMCN	1e0	-4.654e-01	1.0000	324.0	1.62%	812.4	1.65%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-4.646e-01	1.0000	118.0	0.59%	300.0	0.61%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-4.614e-01	1.0000	184.0	0.92%	464.2	0.94%
AT5G59990(C2C2COlike)/colamp-AT5G59990-DAP-Seq(GSE60143)/Homer	TCTCAACCGTTCATT	1e0	-4.587e-01	1.0000	18.0	0.09%	47.7	0.10%
MYB99(MYB)/colamp-MYB99-DAP-Seq(GSE60143)/Homer	GGTAGGTG	1e0	-4.551e-01	1.0000	1128.0	5.64%	2804.4	5.70%
bZIP69(bZIP)/col-bZIP69-DAP-Seq(GSE60143)/Homer	GACAGCTGKCAW	1e0	-4.547e-01	1.0000	173.0	0.86%	437.6	0.89%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-4.496e-01	1.0000	383.0	1.92%	960.5	1.95%
BIM2(bHLH)/col-BIM2-DAP-Seq(GSE60143)/Homer	NNNNCACGTGNN	1e0	-4.493e-01	1.0000	1179.0	5.90%	2931.9	5.96%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-4.444e-01	1.0000	471.0	2.35%	1179.1	2.40%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-4.429e-01	1.0000	98.0	0.49%	250.5	0.51%
ATHB23(ZFHD)/col-ATHB23-DAP-Seq(GSE60143)/Homer	HTAATTARNN	1e0	-4.423e-01	1.0000	1429.0	7.14%	3550.4	7.22%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e0	-4.423e-01	1.0000	1378.0	6.89%	3424.5	6.97%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e0	-4.406e-01	1.0000	1931.0	9.65%	4790.8	9.74%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-4.406e-01	1.0000	618.0	3.09%	1544.1	3.14%
AT1G10720(BSD)/col-AT1G10720-DAP-Seq(GSE60143)/Homer	TTCTAGAAKCTTCTA	1e0	-4.398e-01	1.0000	19.0	0.10%	50.3	0.10%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	-4.368e-01	1.0000	2942.0	14.71%	7285.2	14.82%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-4.318e-01	1.0000	3356.0	16.78%	8307.8	16.90%
At4g32800(AP2EREBP)/colamp-At4g32800-DAP-Seq(GSE60143)/Homer	DYCACCGACAHWWWH	1e0	-4.275e-01	1.0000	62.0	0.31%	160.9	0.33%
ATHB15(HB)/col-ATHB15-DAP-Seq(GSE60143)/Homer	GYAATSATTA	1e0	-4.220e-01	1.0000	437.0	2.19%	1097.7	2.23%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-4.170e-01	1.0000	240.0	1.20%	607.2	1.24%
ZML1(C2C2gata)/colamp-ZML1-DAP-Seq(GSE60143)/Homer	ATCWYRACCGTTSRW	1e0	-4.152e-01	1.0000	10.0	0.05%	27.1	0.06%
MYB13(MYB)/col-MYB13-DAP-Seq(GSE60143)/Homer	HYCACCWACCHH	1e0	-4.147e-01	1.0000	826.0	4.13%	2063.9	4.20%
AtIDD11(C2H2)/colamp-AtIDD11-DAP-Seq(GSE60143)/Homer	TTTGTCGTTT	1e0	-4.083e-01	1.0000	597.0	2.99%	1496.1	3.04%
SPL14(SBP)/col-SPL14-DAP-Seq(GSE60143)/Homer	NNWHTGTACGGAHNH	1e0	-4.023e-01	1.0000	92.0	0.46%	237.3	0.48%
FAR1(FAR1)/col-FAR1-DAP-Seq(GSE60143)/Homer	TKNNNYYCACGCGCY	1e0	-4.003e-01	1.0000	58.0	0.29%	151.8	0.31%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-3.982e-01	1.0000	84.0	0.42%	217.2	0.44%
ATHB20(Homeobox)/colamp-ATHB20-DAP-Seq(GSE60143)/Homer	CAATHATT	1e0	-3.980e-01	1.0000	588.0	2.94%	1475.7	3.00%
At4g36780(BZR)/col-At4g36780-DAP-Seq(GSE60143)/Homer	NNNNNNCACGTGNNN	1e0	-3.979e-01	1.0000	279.0	1.40%	706.7	1.44%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-3.928e-01	1.0000	1314.0	6.57%	3275.5	6.66%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e0	-3.871e-01	1.0000	1696.0	8.48%	4221.5	8.59%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e0	-3.853e-01	1.0000	566.0	2.83%	1422.4	2.89%
DREB19(AP2EREBP)/colamp-DREB19-DAP-Seq(GSE60143)/Homer	AATGTCGGTK	1e0	-3.849e-01	1.0000	333.0	1.67%	842.9	1.71%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-3.757e-01	1.0000	135.0	0.68%	347.6	0.71%
STZ(C2H2)/colamp-STZ-DAP-Seq(GSE60143)/Homer	HNBTCACT	1e0	-3.688e-01	1.0000	10707.0	53.53%	26420.1	53.74%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-3.640e-01	1.0000	2068.0	10.34%	5146.0	10.47%
ATHB18(Homeobox)/colamp-ATHB18-DAP-Seq(GSE60143)/Homer	YCAATSATTG	1e0	-3.604e-01	1.0000	260.0	1.30%	662.6	1.35%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-3.577e-01	1.0000	2107.0	10.54%	5244.5	10.67%
bHLH34(bHLH)/colamp-bHLH34-DAP-Seq(GSE60143)/Homer	HGWGRHWGACACGTG	1e0	-3.558e-01	1.0000	275.0	1.38%	700.6	1.42%
LBD19(LOBAS2)/colamp-LBD19-DAP-Seq(GSE60143)/Homer	CCKGAAWTTCMGGAW	1e0	-3.519e-01	1.0000	2609.0	13.05%	6486.0	13.19%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-3.515e-01	1.0000	302.0	1.51%	768.4	1.56%
IDD5(C2H2)/colamp-IDD5-DAP-Seq(GSE60143)/Homer	TTTTGTCTTTTTBTK	1e0	-3.479e-01	1.0000	1226.0	6.13%	3066.7	6.24%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-3.475e-01	1.0000	79.0	0.40%	207.1	0.42%
ATHB24(ZFHD)/colamp-ATHB24-DAP-Seq(GSE60143)/Homer	TAATTAAS	1e0	-3.472e-01	1.0000	1161.0	5.80%	2905.4	5.91%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-3.468e-01	1.0000	135.0	0.68%	349.6	0.71%
CEJ1(AP2EREBP)/col-CEJ1-DAP-Seq(GSE60143)/Homer	WWTGTCGGTG	1e0	-3.468e-01	1.0000	637.0	3.19%	1604.9	3.26%
MYB116(MYB)/colamp-MYB116-DAP-Seq(GSE60143)/Homer	AGTTAGGCAN	1e0	-3.463e-01	1.0000	938.0	4.69%	2352.3	4.78%
At1g69690(TCP)/colamp-At1g69690-DAP-Seq(GSE60143)/Homer	NHGTGGGGCCCACHW	1e0	-3.423e-01	1.0000	231.0	1.16%	591.5	1.20%
At1g76110(ARID)/colamp-At1g76110-DAP-Seq(GSE60143)/Homer	ATTTAATG	1e0	-3.413e-01	1.0000	810.0	4.05%	2036.0	4.14%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-3.409e-01	1.0000	93.0	0.46%	243.2	0.49%
AT1G77200(AP2EREBP)/colamp-AT1G77200-DAP-Seq(GSE60143)/Homer	ACCGACAHWD	1e0	-3.409e-01	1.0000	444.0	2.22%	1124.7	2.29%
DEAR2(AP2EREBP)/colamp-DEAR2-DAP-Seq(GSE60143)/Homer	HCACCGACAWHD	1e0	-3.407e-01	1.0000	672.0	3.36%	1692.4	3.44%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-3.392e-01	1.0000	692.0	3.46%	1742.2	3.54%
CUC2(NAC)/colamp-CUC2-DAP-Seq(GSE60143)/Homer	TRCKTGTNNNWCAMG	1e0	-3.368e-01	1.0000	289.0	1.44%	737.0	1.50%
HAT5(Homeobox)/colamp-HAT5-DAP-Seq(GSE60143)/Homer	DCAATWATTG	1e0	-3.363e-01	1.0000	191.0	0.95%	491.2	1.00%
bZIP3(bZIP)/col-bZIP3-DAP-Seq(GSE60143)/Homer	DWKNHSACGTGGCAD	1e0	-3.351e-01	1.0000	562.0	2.81%	1419.4	2.89%
SeqBias: C/A-bias	MMMMMMMMMM	1e0	-3.338e-01	1.0000	19954.0	99.77%	49058.9	99.79%
CUC3(NAC)/col-CUC3-DAP-Seq(GSE60143)/Homer	TRCKTGWNNNACAMG	1e0	-3.330e-01	1.0000	308.0	1.54%	785.8	1.60%
Replumless(BLH)/Arabidopsis-RPL.GFP-ChIP-Seq(GSE78727)/Homer	HGTCWHATCA	1e0	-3.307e-01	1.0000	1637.0	8.19%	4088.8	8.32%
EPR1(MYBrelated)/colamp-EPR1-DAP-Seq(GSE60143)/Homer	AAATATCT	1e0	-3.301e-01	1.0000	524.0	2.62%	1325.8	2.70%
LHY1(MYBrelated)/col-LHY1-DAP-Seq(GSE60143)/Homer	AAATATCT	1e0	-3.301e-01	1.0000	524.0	2.62%	1325.8	2.70%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	-3.281e-01	1.0000	623.0	3.12%	1572.6	3.20%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e0	-3.266e-01	1.0000	2500.0	12.50%	6224.5	12.66%
SeqBias: TA-repeat	TATATATATA	1e0	-3.248e-01	1.0000	4857.0	24.29%	12042.4	24.50%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e0	-3.225e-01	1.0000	2197.0	10.98%	5476.7	11.14%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-3.180e-01	1.0000	818.0	4.09%	2059.0	4.19%
CBF1(AP2EREBP)/colamp-CBF1-DAP-Seq(GSE60143)/Homer	YRCCGACATN	1e0	-3.180e-01	1.0000	376.0	1.88%	957.2	1.95%
At2g01060(G2like)/colamp-At2g01060-DAP-Seq(GSE60143)/Homer	AGATKCBNWW	1e0	-3.147e-01	1.0000	4913.0	24.57%	12184.6	24.78%
E2FA(E2FDP)/colamp-E2FA-DAP-Seq(GSE60143)/Homer	WWTGGCGCCAWWWNN	1e0	-3.145e-01	1.0000	439.0	2.20%	1115.1	2.27%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-3.143e-01	1.0000	296.0	1.48%	757.1	1.54%
COG1(C2C2dof)/col-COG1-DAP-Seq(GSE60143)/Homer	DAAAAAGTGA	1e0	-3.119e-01	1.0000	2658.0	13.29%	6619.9	13.47%
Unknown4/Drosophila-Promoters/Homer	AAAAATACCRMA	1e0	-3.044e-01	1.0000	159.0	0.80%	413.8	0.84%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-3.026e-01	1.0000	1817.0	9.09%	4541.4	9.24%
OBP3(C2C2dof)/col-OBP3-DAP-Seq(GSE60143)/Homer	NYWACTTTTT	1e0	-3.024e-01	1.0000	5879.0	29.39%	14570.8	29.64%
AT2G20110(CPP)/colamp-AT2G20110-DAP-Seq(GSE60143)/Homer	ATTYAAATHY	1e0	-3.018e-01	1.0000	2273.0	11.37%	5670.7	11.53%
SPL11(SBP)/col100-SPL11-DAP-Seq(GSE60143)/Homer	YTGTACTTBH	1e0	-2.996e-01	1.0000	895.0	4.47%	2254.6	4.59%
HSF6(HSF)/col-HSF6-DAP-Seq(GSE60143)/Homer	TTYTAGAAGCTTCTA	1e0	-2.965e-01	1.0000	292.0	1.46%	749.9	1.53%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	-2.945e-01	1.0000	1913.0	9.56%	4781.4	9.73%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-2.933e-01	1.0000	874.0	4.37%	2203.4	4.48%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-2.929e-01	1.0000	1419.0	7.09%	3557.9	7.24%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-2.914e-01	1.0000	3295.0	16.48%	8200.3	16.68%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	-2.886e-01	1.0000	31.0	0.15%	86.2	0.18%
AT5G66940(C2C2dof)/col-AT5G66940-DAP-Seq(GSE60143)/Homer	NNHACTTTWT	1e0	-2.875e-01	1.0000	3707.0	18.54%	9219.0	18.75%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-2.867e-01	1.0000	207.0	1.03%	536.8	1.09%
MYB33(MYB)/col-MYB33-DAP-Seq(GSE60143)/Homer	DDTYNGTTAN	1e0	-2.859e-01	1.0000	3191.0	15.96%	7945.2	16.16%
AT3G52440(C2C2dof)/colamp-AT3G52440-DAP-Seq(GSE60143)/Homer	DTHACTTTTT	1e0	-2.836e-01	1.0000	4312.0	21.56%	10714.4	21.79%
AT5G22990(C2H2)/col-AT5G22990-DAP-Seq(GSE60143)/Homer	WCGAHDTCGWHN	1e0	-2.743e-01	1.0000	27.0	0.14%	76.8	0.16%
MYB96(MYB)/colamp-MYB96-DAP-Seq(GSE60143)/Homer	WGGTRGTTGG	1e0	-2.737e-01	1.0000	1163.0	5.82%	2926.6	5.95%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e0	-2.724e-01	1.0000	41.0	0.21%	113.3	0.23%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-2.722e-01	1.0000	906.0	4.53%	2287.3	4.65%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	-2.713e-01	1.0000	18.0	0.09%	52.4	0.11%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-2.679e-01	1.0000	4531.0	22.66%	11261.3	22.91%
GRF9(GRF)/colamp-GRF9-DAP-Seq(GSE60143)/Homer	NWCTGACANNNNNNN	1e0	-2.674e-01	1.0000	1393.0	6.97%	3499.2	7.12%
MYB62(MYB)/colamp-MYB62-DAP-Seq(GSE60143)/Homer	NTACCTAACT	1e0	-2.648e-01	1.0000	1782.0	8.91%	4465.0	9.08%
PIF5ox(bHLH)/Arabidopsis-PIF5ox-ChIP-Seq(GSE35062)/Homer	BCACGTGVDN	1e0	-2.644e-01	1.0000	1470.0	7.35%	3691.8	7.51%
AtGRF6(GRF)/col-AtGRF6-DAP-Seq(GSE60143)/Homer	NTGTCAGADNNNNNN	1e0	-2.644e-01	1.0000	1609.0	8.04%	4036.6	8.21%
AT2G15740(C2H2)/col-AT2G15740-DAP-Seq(GSE60143)/Homer	DHNDWATCGATD	1e0	-2.639e-01	1.0000	736.0	3.68%	1865.9	3.80%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-2.596e-01	1.0000	68.0	0.34%	184.4	0.38%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-2.569e-01	1.0000	122.0	0.61%	323.7	0.66%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e0	-2.547e-01	1.0000	1512.0	7.56%	3799.0	7.73%
GT3a(Trihelix)/col-GT3a-DAP-Seq(GSE60143)/Homer	WNACACGTGTYWWAW	1e0	-2.540e-01	1.0000	180.0	0.90%	471.5	0.96%
AT3G10113(MYBrelated)/col-AT3G10113-DAP-Seq(GSE60143)/Homer	WNAAATATCWWN	1e0	-2.523e-01	1.0000	625.0	3.12%	1590.4	3.24%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-2.504e-01	1.0000	183.0	0.92%	479.7	0.98%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-2.449e-01	1.0000	2316.0	11.58%	5795.7	11.79%
AT4G27900(C2C2COlike)/col-AT4G27900-DAP-Seq(GSE60143)/Homer	TCTCVACCGTTSATT	1e0	-2.433e-01	1.0000	2.0	0.01%	7.0	0.01%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-2.425e-01	1.0000	323.0	1.62%	834.6	1.70%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-2.424e-01	1.0000	459.0	2.30%	1176.3	2.39%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-2.420e-01	1.0000	866.0	4.33%	2194.8	4.46%
GATA19(C2C2gata)/colamp-GATA19-DAP-Seq(GSE60143)/Homer	ATCSGATCVG	1e0	-2.414e-01	1.0000	61.0	0.30%	167.3	0.34%
TGA3(bZIP)/colamp-TGA3-DAP-Seq(GSE60143)/Homer	WTGATGACGTCATCW	1e0	-2.414e-01	1.0000	61.0	0.30%	167.5	0.34%
LMI1(HB)/colamp-LMI1-DAP-Seq(GSE60143)/Homer	AATTATTG	1e0	-2.389e-01	1.0000	978.0	4.89%	2474.7	5.03%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-2.382e-01	1.0000	558.0	2.79%	1425.0	2.90%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	-2.360e-01	1.0000	249.0	1.24%	648.2	1.32%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-2.352e-01	1.0000	262.0	1.31%	681.9	1.39%
MYB3R4(MYB)/col-MYB3R4-DAP-Seq(GSE60143)/Homer	AWWTAACCGTTR	1e0	-2.342e-01	1.0000	147.0	0.73%	389.4	0.79%
WRKY27(WRKY)/colamp-WRKY27-DAP-Seq(GSE60143)/Homer	NHGTTGACYTWD	1e0	-2.325e-01	1.0000	1336.0	6.68%	3367.7	6.85%
VRN1(ABI3VP1)/col-VRN1-DAP-Seq(GSE60143)/Homer	TTTTTTTTTT	1e0	-2.322e-01	1.0000	481.0	2.40%	1233.4	2.51%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-2.309e-01	1.0000	1514.0	7.57%	3810.3	7.75%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-2.295e-01	1.0000	1193.0	5.96%	3012.9	6.13%
DAG2(C2C2dof)/col-DAG2-DAP-Seq(GSE60143)/Homer	WWTTHACTTTTT	1e0	-2.211e-01	1.0000	3158.0	15.79%	7889.4	16.05%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e0	-2.207e-01	1.0000	1596.0	7.98%	4017.3	8.17%
HSFB3(HSF)/colamp-HSFB3-DAP-Seq(GSE60143)/Homer	TTCTAGAAGMTTHTW	1e0	-2.200e-01	1.0000	13.0	0.07%	40.8	0.08%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-2.177e-01	1.0000	1695.0	8.48%	4264.4	8.67%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e0	-2.172e-01	1.0000	18.0	0.09%	54.0	0.11%
BBX31(Orphan)/col-BBX31-DAP-Seq(GSE60143)/Homer	NAAAAAGTDA	1e0	-2.171e-01	1.0000	2906.0	14.53%	7267.8	14.78%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e0	-2.163e-01	1.0000	450.0	2.25%	1158.2	2.36%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e0	-2.163e-01	1.0000	1027.0	5.13%	2602.1	5.29%
ANAC094(NAC)/col-ANAC094-DAP-Seq(GSE60143)/Homer	DVCGTRNNNNNYACG	1e0	-2.154e-01	1.0000	156.0	0.78%	414.9	0.84%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-2.146e-01	1.0000	545.0	2.73%	1397.2	2.84%
IDD4(C2H2)/col-IDD4-DAP-Seq(GSE60143)/Homer	TTTGTCTTTWTB	1e0	-2.137e-01	1.0000	1583.0	7.92%	3987.5	8.11%
MYB10(MYB)/col-MYB10-DAP-Seq(GSE60143)/Homer	YCCACCTACCHH	1e0	-2.068e-01	1.0000	464.0	2.32%	1195.1	2.43%
AGL13(MADS)/col-AGL13-DAP-Seq(GSE60143)/Homer	TWCCAWWTWTGGWAA	1e0	-2.049e-01	1.0000	83.0	0.41%	227.8	0.46%
WRKY7(WRKY)/colamp-WRKY7-DAP-Seq(GSE60143)/Homer	AAAAGTCAACGSHWD	1e0	-2.002e-01	1.0000	1.0	0.01%	4.2	0.01%
GAGA-repeat/Arabidopsis-Promoters/Homer	CTCTCTCTCY	1e0	-1.990e-01	1.0000	1801.0	9.01%	4534.1	9.22%
ATHB33(ZFHD)/col-ATHB33-DAP-Seq(GSE60143)/Homer	NGTRATTAAK	1e0	-1.955e-01	1.0000	2071.0	10.36%	5206.3	10.59%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e0	-1.919e-01	1.0000	843.0	4.21%	2149.3	4.37%
TCP17(TCP)/col-TCP17-DAP-Seq(GSE60143)/Homer	GTGGTCCCCA	1e0	-1.899e-01	1.0000	46.0	0.23%	131.3	0.27%
SPL5(SBP)/colamp-SPL5-DAP-Seq(GSE60143)/Homer	NNHGTACGGHNN	1e0	-1.877e-01	1.0000	253.0	1.26%	665.8	1.35%
AT4G37180(G2like)/col-AT4G37180-DAP-Seq(GSE60143)/Homer	AGAATCTTNN	1e0	-1.856e-01	1.0000	1811.0	9.05%	4564.4	9.28%
TCX2(CPP)/colamp-TCX2-DAP-Seq(GSE60143)/Homer	NNWWTTYRAAHN	1e0	-1.834e-01	1.0000	2438.0	12.19%	6122.7	12.45%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-1.760e-01	1.0000	49.0	0.24%	140.7	0.29%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-1.745e-01	1.0000	557.0	2.79%	1436.4	2.92%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-1.687e-01	1.0000	13.0	0.07%	42.5	0.09%
Cbf1(bHLH)/Yeast-Cbf1-ChIP-Seq(GSE29506)/Homer	TCACGTGAYH	1e0	-1.682e-01	1.0000	330.0	1.65%	864.9	1.76%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-1.674e-01	1.0000	1765.0	8.82%	4457.2	9.07%
ATHB34(ZFHD)/colamp-ATHB34-DAP-Seq(GSE60143)/Homer	TRATTARS	1e0	-1.666e-01	1.0000	1242.0	6.21%	3154.2	6.42%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-1.664e-01	1.0000	4245.0	21.22%	10606.7	21.57%
FUS3(ABI3VP1)/col-FUS3-DAP-Seq(GSE60143)/Homer	DNNWTNTGCATGKNN	1e0	-1.661e-01	1.0000	1284.0	6.42%	3259.6	6.63%
MYB51(MYB)/col-MYB51-DAP-Seq(GSE60143)/Homer	GGTAGGTG	1e0	-1.661e-01	1.0000	1021.0	5.10%	2602.4	5.29%
TOD6?/SacCer-Promoters/Homer	GCGATGAGMT	1e0	-1.625e-01	1.0000	190.0	0.95%	508.5	1.03%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e0	-1.623e-01	1.0000	3904.0	19.52%	9765.1	19.86%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-1.614e-01	1.0000	459.0	2.30%	1192.1	2.42%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-1.595e-01	1.0000	2043.0	10.21%	5152.4	10.48%
MYB118(MYB)/colamp-MYB118-DAP-Seq(GSE60143)/Homer	TAWCCGTTAC	1e0	-1.578e-01	1.0000	354.0	1.77%	928.0	1.89%
HSFA1E(HSF)/col-HSFA1E-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e0	-1.576e-01	1.0000	68.0	0.34%	192.3	0.39%
AGL16(MADS)/col-AGL16-DAP-Seq(GSE60143)/Homer	TWCCHWATWDGGAAA	1e0	-1.576e-01	1.0000	135.0	0.68%	367.7	0.75%
TBP3(MYBrelated)/col-TBP3-DAP-Seq(GSE60143)/Homer	VYTAGGGCAN	1e0	-1.574e-01	1.0000	1041.0	5.21%	2655.1	5.40%
AT2G28920(ND)/col-AT2G28920-DAP-Seq(GSE60143)/Homer	WAGATATTTWTW	1e0	-1.571e-01	1.0000	350.0	1.75%	917.0	1.87%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-1.557e-01	1.0000	220.0	1.10%	586.2	1.19%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-1.525e-01	1.0000	887.0	4.44%	2271.3	4.62%
Unknown6/Drosophila-Promoters/Homer	AATTTTAAAA	1e0	-1.521e-01	1.0000	1187.0	5.93%	3022.9	6.15%
CAMTA5(CAMTA)/col-CAMTA5-DAP-Seq(GSE60143)/Homer	ACGCGTTTTANACRC	1e0	-1.506e-01	1.0000	222.0	1.11%	592.6	1.21%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-1.495e-01	1.0000	169.0	0.84%	456.1	0.93%
MYB3R1(MYB)/col-MYB3R1-DAP-Seq(GSE60143)/Homer	WWDTDACCGTTR	1e0	-1.488e-01	1.0000	288.0	1.44%	761.4	1.55%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e0	-1.476e-01	1.0000	2247.0	11.24%	5665.2	11.52%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e0	-1.459e-01	1.0000	484.0	2.42%	1259.9	2.56%
AZF1(C2H2)/colamp-AZF1-DAP-Seq(GSE60143)/Homer	DKSWCACT	1e0	-1.448e-01	1.0000	9342.0	46.71%	23189.1	47.17%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-1.438e-01	1.0000	3722.0	18.61%	9326.2	18.97%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-1.437e-01	1.0000	183.0	0.92%	493.7	1.00%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-1.429e-01	1.0000	1124.0	5.62%	2868.9	5.84%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-1.419e-01	1.0000	1169.0	5.85%	2981.6	6.06%
AT2G01818(PLATZ)/col-AT2G01818-DAP-Seq(GSE60143)/Homer	TCTAGAABSTTC	1e0	-1.418e-01	1.0000	133.0	0.66%	364.5	0.74%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-1.418e-01	1.0000	405.0	2.02%	1060.8	2.16%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-1.409e-01	1.0000	508.0	2.54%	1321.2	2.69%
GBF3(bZIP)/Arabidopsis-GBF3-ChIP-Seq(GSE80564)/Homer	TGCCACGTSAYC	1e0	-1.405e-01	1.0000	470.0	2.35%	1225.4	2.49%
CBF3(AP2EREBP)/colamp-CBF3-DAP-Seq(GSE60143)/Homer	YNRCCGACATNN	1e0	-1.400e-01	1.0000	231.0	1.16%	617.4	1.26%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	-1.396e-01	1.0000	39.0	0.19%	116.2	0.24%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-1.394e-01	1.0000	693.0	3.46%	1788.1	3.64%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-1.371e-01	1.0000	2528.0	12.64%	6369.3	12.96%
MYB67(MYB)/col-MYB67-DAP-Seq(GSE60143)/Homer	YYYACCTAAC	1e0	-1.370e-01	1.0000	1175.0	5.88%	2998.5	6.10%
dof43(C2C2dof)/colamp-dof43-DAP-Seq(GSE60143)/Homer	NAAAAAGTDA	1e0	-1.363e-01	1.0000	2682.0	13.41%	6752.1	13.73%
FHY3(FAR1)/Arabidopsis-FHY3-ChIP-Seq(GSE30711)/Homer	HHCACGCGCBTN	1e0	-1.358e-01	1.0000	198.0	0.99%	533.9	1.09%
LHY(Myb)/Seedling-LHY-ChIP-Seq(GSE52175)/Homer	ADAAATATCT	1e0	-1.344e-01	1.0000	1423.0	7.12%	3619.3	7.36%
ANAC047(NAC)/colamp-ANAC047-DAP-Seq(GSE60143)/Homer	WACACGTAACTT	1e0	-1.327e-01	1.0000	612.0	3.06%	1586.4	3.23%
ERF38(AP2EREBP)/col-ERF38-DAP-Seq(GSE60143)/Homer	CACCGACA	1e0	-1.306e-01	1.0000	249.0	1.24%	665.4	1.35%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e0	-1.303e-01	1.0000	281.0	1.41%	747.7	1.52%
ARF2(ARF)/col-ARF2-DAP-Seq(GSE60143)/Homer	TTGTCGGMWN	1e0	-1.296e-01	1.0000	3983.0	19.91%	9982.1	20.30%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-1.288e-01	1.0000	646.0	3.23%	1673.1	3.40%
MYB98(MYB)/col-MYB98-DAP-Seq(GSE60143)/Homer	NWDCCGTTAC	1e0	-1.258e-01	1.0000	368.0	1.84%	971.0	1.98%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-1.256e-01	1.0000	481.0	2.40%	1257.9	2.56%
FRS9(ND)/col-FRS9-DAP-Seq(GSE60143)/Homer	RGAGAGAGAAAG	1e0	-1.254e-01	1.0000	438.0	2.19%	1148.9	2.34%
MYB58(MYB)/colamp-MYB58-DAP-Seq(GSE60143)/Homer	YYYACCWACC	1e0	-1.254e-01	1.0000	1189.0	5.95%	3038.2	6.18%
dof42(C2C2dof)/col-dof42-DAP-Seq(GSE60143)/Homer	AAAAAGGC	1e0	-1.245e-01	1.0000	1032.0	5.16%	2645.7	5.38%
BIM3(bHLH)/col-BIM3-DAP-Seq(GSE60143)/Homer	TWVTCACGTGAB	1e0	-1.219e-01	1.0000	115.0	0.57%	320.8	0.65%
CELF2(RRM)/JSL1-CELF2-CLIP-Seq(GSE71264)/Homer	RGTGTCAG	1e0	-1.174e-01	1.0000	443.0	2.21%	1163.5	2.37%
RLR1?/SacCer-Promoters/Homer	WTTTTCYYTTTT	1e0	-1.173e-01	1.0000	1154.0	5.77%	2954.5	6.01%
LIN-15B(Zf)/cElegans-L3-LIN15B-ChIP-Seq(modEncode)/Homer	CARTGGAGCGCRYTTGCATT	1e0	-1.172e-01	1.0000	5.0	0.03%	20.6	0.04%
SOL1(CPP)/colamp-SOL1-DAP-Seq(GSE60143)/Homer	ATTTAAATHN	1e0	-1.161e-01	1.0000	2411.0	12.05%	6091.1	12.39%
TATA-box/SacCer-Promoters/Homer	BBHWTATATA	1e0	-1.156e-01	1.0000	571.0	2.85%	1488.7	3.03%
At2g44940(AP2EREBP)/colamp-At2g44940-DAP-Seq(GSE60143)/Homer	NYACCGACAHNNNNN	1e0	-1.154e-01	1.0000	107.0	0.53%	300.4	0.61%
LCL1(MYBrelated)/colamp-LCL1-DAP-Seq(GSE60143)/Homer	NAAAATATCTWHWWN	1e0	-1.150e-01	1.0000	198.0	0.99%	538.0	1.09%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-1.135e-01	1.0000	225.0	1.12%	607.1	1.23%
HSFB4(HSF)/col-HSFB4-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e0	-1.121e-01	1.0000	28.0	0.14%	88.4	0.18%
PIF4(bHLH)/Seedling-PIF4-ChIP-Seq(GSE35315)/Homer	NNBCACGTGN	1e0	-1.121e-01	1.0000	1702.0	8.51%	4327.0	8.80%
AT3G16280(AP2EREBP)/colamp-AT3G16280-DAP-Seq(GSE60143)/Homer	HCACCGACAHHDHHN	1e0	-1.116e-01	1.0000	163.0	0.81%	447.3	0.91%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-1.113e-01	1.0000	661.0	3.31%	1718.0	3.49%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-1.068e-01	1.0000	195.0	0.97%	531.6	1.08%
BZR1(BZR)/col-BZR1-DAP-Seq(GSE60143)/Homer	NNCRCACGTGCG	1e0	-1.054e-01	1.0000	71.0	0.36%	206.4	0.42%
At4g38000(C2C2dof)/col-At4g38000-DAP-Seq(GSE60143)/Homer	WWWTWACTTTTT	1e0	-1.039e-01	1.0000	2056.0	10.28%	5215.3	10.61%
GBF5(bZIP)/colamp-GBF5-DAP-Seq(GSE60143)/Homer	WKNWSACGTGGCAWN	1e0	-1.031e-01	1.0000	303.0	1.52%	810.8	1.65%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-1.015e-01	1.0000	210.0	1.05%	571.7	1.16%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e0	-1.013e-01	1.0000	2587.0	12.93%	6539.3	13.30%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-1.008e-01	1.0000	779.0	3.90%	2019.2	4.11%
LOB(LOBAS2)/col-LOB-DAP-Seq(GSE60143)/Homer	CGCCGKAWWTTHCGS	1e0	-1.000e-01	1.0000	114.0	0.57%	321.2	0.65%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-9.733e-02	1.0000	30.0	0.15%	95.9	0.19%
GT2(Trihelix)/colamp-GT2-DAP-Seq(GSE60143)/Homer	AMGGTAAAWWWN	1e0	-9.522e-02	1.0000	1828.0	9.14%	4652.3	9.46%
AT4G26030(C2H2)/col-AT4G26030-DAP-Seq(GSE60143)/Homer	BYYACCWACY	1e0	-9.491e-02	1.0000	1179.0	5.90%	3028.0	6.16%
CBF4(AP2EREBP)/colamp-CBF4-DAP-Seq(GSE60143)/Homer	NRCCGACDWNNNNNN	1e0	-9.441e-02	1.0000	334.0	1.67%	892.6	1.82%
Rap210(AP2EREBP)/col-Rap210-DAP-Seq(GSE60143)/Homer	TGTCGGCA	1e0	-9.306e-02	1.0000	312.0	1.56%	836.8	1.70%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-9.279e-02	1.0000	7410.0	37.05%	18482.4	37.59%
MYB119(MYB)/colamp-MYB119-DAP-Seq(GSE60143)/Homer	YRACCGTTACDD	1e0	-9.213e-02	1.0000	372.0	1.86%	990.3	2.01%
NUC(C2H2)/col-NUC-DAP-Seq(GSE60143)/Homer	HAVAAAACGACAAAA	1e0	-9.211e-02	1.0000	145.0	0.73%	404.5	0.82%
ASL18(LOBAS2)/colamp-ASL18-DAP-Seq(GSE60143)/Homer	CCGGAAAWTCMGGAR	1e0	-8.895e-02	1.0000	2146.0	10.73%	5450.6	11.09%
MYB107(MYB)/col-MYB107-DAP-Seq(GSE60143)/Homer	RGTWGGTRRR	1e0	-8.807e-02	1.0000	2090.0	10.45%	5311.4	10.80%
SPCH(bHLH)/Seedling-SPCH-ChIP-Seq(GSE57497)/Homer	WNBCACGTGA	1e0	-8.677e-02	1.0000	1317.0	6.59%	3379.7	6.87%
HSFA6A(HSF)/col-HSFA6A-DAP-Seq(GSE60143)/Homer	RGAAGNTTCTAGAAN	1e0	-8.581e-02	1.0000	25.0	0.12%	82.9	0.17%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e0	-8.568e-02	1.0000	1557.0	7.79%	3981.2	8.10%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e0	-8.380e-02	1.0000	1630.0	8.15%	4165.7	8.47%
GATA15(C2C2gata)/col-GATA15-DAP-Seq(GSE60143)/Homer	KATGATCA	1e0	-8.379e-02	1.0000	1890.0	9.45%	4815.8	9.80%
At5g04390(C2H2)/col200-At5g04390-DAP-Seq(GSE60143)/Homer	AGTGANDN	1e0	-8.141e-02	1.0000	10432.0	52.16%	25933.5	52.75%
OBP4(C2C2dof)/col-OBP4-DAP-Seq(GSE60143)/Homer	WTTHACTTTTTB	1e0	-7.924e-02	1.0000	2595.0	12.97%	6577.9	13.38%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e0	-7.909e-02	1.0000	1317.0	6.59%	3384.7	6.88%
Dorsal(RHD)/Embryo-dl-ChIP-Seq(GSE65441)/Homer	GGGAAAAMCCCG	1e0	-7.837e-02	1.0000	276.0	1.38%	748.6	1.52%
AtHB32(ZFHD)/col200-AtHB32-DAP-Seq(GSE60143)/Homer	CGAATTAT	1e0	-7.805e-02	1.0000	1801.0	9.01%	4597.7	9.35%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-7.534e-02	1.0000	288.0	1.44%	780.2	1.59%
TINY(AP2EREBP)/col-TINY-DAP-Seq(GSE60143)/Homer	NNCACCGACA	1e0	-7.412e-02	1.0000	129.0	0.65%	366.9	0.75%
TGA4(bZIP)/colamp-TGA4-DAP-Seq(GSE60143)/Homer	RTGACGTCAKCW	1e0	-7.206e-02	1.0000	286.0	1.43%	776.3	1.58%
MYB105(MYB)/colamp-MYB105-DAP-Seq(GSE60143)/Homer	RATWCCGTTA	1e0	-7.185e-02	1.0000	850.0	4.25%	2213.1	4.50%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-7.164e-02	1.0000	793.0	3.96%	2069.5	4.21%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e0	-7.148e-02	1.0000	142.0	0.71%	401.6	0.82%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-7.006e-02	1.0000	11.0	0.06%	42.8	0.09%
CBF2(AP2EREBP)/colamp-CBF2-DAP-Seq(GSE60143)/Homer	YBRCCGACATNNNNN	1e0	-6.886e-02	1.0000	215.0	1.07%	593.1	1.21%
RBFox2(?)/Heart-RBFox2-CLIP-Seq(GSE57926)/Homer	TGCATGCA	1e0	-6.743e-02	1.0000	2812.0	14.06%	7129.5	14.50%
HSF7(HSF)/colamp-HSF7-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e0	-6.660e-02	1.0000	199.0	1.00%	552.3	1.12%
AGL95(ND)/col-AGL95-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e0	-6.588e-02	1.0000	90.0	0.45%	264.7	0.54%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-6.429e-02	1.0000	894.0	4.47%	2329.3	4.74%
At1g64620(C2C2dof)/colamp-At1g64620-DAP-Seq(GSE60143)/Homer	CACTTTTT	1e0	-6.297e-02	1.0000	2619.0	13.10%	6653.8	13.53%
E-box/Drosophila-Promoters/Homer	AACAGCTGTTHN	1e0	-6.265e-02	1.0000	366.0	1.83%	986.4	2.01%
AIL7(AP2EREBP)/colamp-AIL7-DAP-Seq(GSE60143)/Homer	KCACRAWTYYCGAGG	1e0	-6.247e-02	1.0000	490.0	2.45%	1304.0	2.65%
EMB1789(C3H)/col-EMB1789-DAP-Seq(GSE60143)/Homer	TWTTTACCGYND	1e0	-6.225e-02	1.0000	564.0	2.82%	1493.2	3.04%
AT5G47660(Trihelix)/colamp-AT5G47660-DAP-Seq(GSE60143)/Homer	AWTTTTACCG	1e0	-6.216e-02	1.0000	2441.0	12.21%	6210.4	12.63%
AT1G12630(AP2EREBP)/colamp-AT1G12630-DAP-Seq(GSE60143)/Homer	TGTCGGCA	1e0	-6.194e-02	1.0000	293.0	1.47%	798.5	1.62%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e0	-6.116e-02	1.0000	1675.0	8.38%	4296.0	8.74%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-6.000e-02	1.0000	101.0	0.51%	295.0	0.60%
MYB3(MYB)/Arabidopsis-MYB3-ChIP-Seq(GSE80564)/Homer	GKTAGGTRGG	1e0	-5.971e-02	1.0000	2190.0	10.95%	5586.5	11.36%
TCP7(TCP)/col-TCP7-DAP-Seq(GSE60143)/Homer	GTGGGSCCCACHHNN	1e0	-5.915e-02	1.0000	530.0	2.65%	1408.4	2.86%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-5.652e-02	1.0000	587.0	2.94%	1555.1	3.16%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-5.596e-02	1.0000	152.0	0.76%	432.1	0.88%
DDF2(AP2EREBP)/col-DDF2-DAP-Seq(GSE60143)/Homer	GATGTCGRCR	1e0	-5.571e-02	1.0000	18.0	0.09%	65.3	0.13%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-5.556e-02	1.0000	336.0	1.68%	912.0	1.86%
FEA4(bZIP)/Corn-FEA4-ChIP-Seq(GSE61954)/Homer	TGACGTCACS	1e0	-5.465e-02	1.0000	1340.0	6.70%	3461.6	7.04%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-5.237e-02	1.0000	4118.0	20.59%	10395.3	21.14%
ZML2(C2C2gata)/col-ZML2-DAP-Seq(GSE60143)/Homer	CATCATCATC	1e0	-5.199e-02	1.0000	189.0	0.95%	531.5	1.08%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e0	-5.171e-02	1.0000	102.0	0.51%	300.9	0.61%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-5.140e-02	1.0000	440.0	2.20%	1182.2	2.40%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e0	-5.092e-02	1.0000	2220.0	11.10%	5672.0	11.54%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e0	-4.934e-02	1.0000	6453.0	32.27%	16182.6	32.92%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-4.917e-02	1.0000	841.0	4.21%	2206.7	4.49%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-4.841e-02	1.0000	2402.0	12.01%	6129.8	12.47%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	-4.743e-02	1.0000	1.0	0.01%	8.6	0.02%
WIP5(C2H2)/colamp-WIP5-DAP-Seq(GSE60143)/Homer	TDTTCTCMAGGT	1e0	-4.715e-02	1.0000	1545.0	7.72%	3984.3	8.10%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-4.709e-02	1.0000	54.0	0.27%	170.9	0.35%
LBD23(LOBAS2)/colamp-LBD23-DAP-Seq(GSE60143)/Homer	GCGNAWWWTNCGCYW	1e0	-4.694e-02	1.0000	916.0	4.58%	2398.3	4.88%
RRTF1(AP2EREBP)/colamp-RRTF1-DAP-Seq(GSE60143)/Homer	CCGCCGCHATTT	1e0	-4.692e-02	1.0000	141.0	0.70%	407.0	0.83%
Pho4(bHLH)/Yeast-Pho4-ChIP-Seq(GSE29506)/Homer	AAGCACGTGBGD	1e0	-4.539e-02	1.0000	180.0	0.90%	510.7	1.04%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-4.345e-02	1.0000	1913.0	9.56%	4912.3	9.99%
At3g45610(C2C2dof)/col-At3g45610-DAP-Seq(GSE60143)/Homer	TWACTTTTTS	1e0	-4.328e-02	1.0000	2863.0	14.31%	7287.8	14.82%
GTL1(Trihelix)/colamp-GTL1-DAP-Seq(GSE60143)/Homer	WWTTTACCKY	1e0	-4.311e-02	1.0000	1851.0	9.25%	4757.8	9.68%
AT1G04880(ARID)/colamp-AT1G04880-DAP-Seq(GSE60143)/Homer	AAACTATATADTATA	1e0	-4.293e-02	1.0000	98.0	0.49%	292.8	0.60%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	-4.159e-02	1.0000	29.0	0.14%	100.6	0.20%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e0	-4.031e-02	1.0000	337.0	1.69%	923.7	1.88%
HSFC1(HSF)/col-HSFC1-DAP-Seq(GSE60143)/Homer	HTTCTAGAADCTTCT	1e0	-4.014e-02	1.0000	161.0	0.80%	462.6	0.94%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e0	-3.982e-02	1.0000	690.0	3.45%	1830.4	3.72%
Pho2(bHLH)/Yeast-Pho2-ChIP-Seq(GSE29506)/Homer	CCCACGTGCT	1e0	-3.970e-02	1.0000	360.0	1.80%	983.5	2.00%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e0	-3.897e-02	1.0000	8046.0	40.23%	20136.0	40.96%
ANAC046(NAC)/colamp-ANAC046-DAP-Seq(GSE60143)/Homer	ACACGYWAYC	1e0	-3.741e-02	1.0000	2626.0	13.13%	6705.1	13.64%
AT5G63260(C3H)/col-AT5G63260-DAP-Seq(GSE60143)/Homer	RAAAAAGTRA	1e0	-3.732e-02	1.0000	4384.0	21.92%	11082.9	22.54%
M1BP(Zf)/S2R+-M1BP-ChIP-Seq(GSE49842)/Homer	CAGTGTGACCGT	1e0	-3.656e-02	1.0000	214.0	1.07%	604.3	1.23%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e0	-3.655e-02	1.0000	979.0	4.90%	2568.5	5.22%
TCP16(TCP)/colamp-TCP16-DAP-Seq(GSE60143)/Homer	GTGGDCCYNNNNNNN	1e0	-3.634e-02	1.0000	589.0	2.94%	1575.9	3.21%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e0	-3.624e-02	1.0000	1542.0	7.71%	3990.7	8.12%
BOS1(MYB)/col-BOS1-DAP-Seq(GSE60143)/Homer	NNRCCTAACT	1e0	-3.555e-02	1.0000	1180.0	5.90%	3078.9	6.26%
PIF7(bHLH)/col-PIF7-DAP-Seq(GSE60143)/Homer	CCACGTGGNH	1e0	-3.545e-02	1.0000	185.0	0.92%	528.8	1.08%
SeqBias: GCW-triplet	GCWGCWGCWGCW	1e0	-3.543e-02	1.0000	19956.0	99.78%	49084.7	99.84%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-3.362e-02	1.0000	68.0	0.34%	213.7	0.43%
IDD2(C2H2)/colamp-IDD2-DAP-Seq(GSE60143)/Homer	HAVAAAAMGACAAAA	1e0	-3.306e-02	1.0000	203.0	1.01%	577.3	1.17%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-3.214e-02	1.0000	1085.0	5.42%	2842.6	5.78%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-3.163e-02	1.0000	1900.0	9.50%	4897.5	9.96%
ATAF1(NAC)/col-ATAF1-DAP-Seq(GSE60143)/Homer	YACGTMAY	1e0	-3.144e-02	1.0000	2355.0	11.77%	6038.5	12.28%
CCA(Myb)/Arabidopsis-CCA.GFP-ChIP-Seq(GSE70533)/Homer	AGATATYTTT	1e0	-3.060e-02	1.0000	1113.0	5.56%	2915.1	5.93%
AT2G40260(G2like)/colamp-AT2G40260-DAP-Seq(GSE60143)/Homer	WAAAYATTCTTT	1e0	-2.909e-02	1.0000	2849.0	14.24%	7278.6	14.81%
bHLH10(bHLH)/colamp-bHLH10-DAP-Seq(GSE60143)/Homer	YACCGACA	1e0	-2.746e-02	1.0000	138.0	0.69%	407.4	0.83%
NLP7(RWPRK)/col-NLP7-DAP-Seq(GSE60143)/Homer	TGRCCYTTCR	1e0	-2.729e-02	1.0000	2869.0	14.34%	7332.7	14.92%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e0	-2.628e-02	1.0000	536.0	2.68%	1449.3	2.95%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e0	-2.528e-02	1.0000	534.0	2.67%	1445.4	2.94%
HAT1(Homeobox)/col-HAT1-DAP-Seq(GSE60143)/Homer	SCAATCATTGNN	1e0	-2.480e-02	1.0000	219.0	1.09%	625.6	1.27%
MYB41(MYB)/col-MYB41-DAP-Seq(GSE60143)/Homer	BYTYACCTAA	1e0	-2.400e-02	1.0000	444.0	2.22%	1214.6	2.47%
PHA-4(Forkhead)/cElegans-Embryos-PHA4-ChIP-Seq(modEncode)/Homer	KTGTTTGC	1e0	-2.351e-02	1.0000	5885.0	29.43%	14840.7	30.19%
DDF1(AP2EREBP)/col-DDF1-DAP-Seq(GSE60143)/Homer	GCCGACAT	1e0	-2.341e-02	1.0000	202.0	1.01%	581.2	1.18%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e0	-2.309e-02	1.0000	1043.0	5.21%	2749.7	5.59%
AT5G60130(ABI3VP1)/col-AT5G60130-DAP-Seq(GSE60143)/Homer	WTTYTAAGVAAA	1e0	-2.296e-02	1.0000	3470.0	17.35%	8843.5	17.99%
IBL1(bHLH)/Seedling-IBL1-ChIP-Seq(GSE51120)/Homer	CACGTGCC	1e0	-2.247e-02	1.0000	1931.0	9.65%	4993.7	10.16%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e0	-2.188e-02	1.0000	1812.0	9.06%	4695.8	9.55%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e0	-2.179e-02	1.0000	1891.0	9.46%	4894.4	9.96%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-2.106e-02	1.0000	1237.0	6.19%	3245.4	6.60%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-1.975e-02	1.0000	149.0	0.74%	442.6	0.90%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-1.951e-02	1.0000	743.0	3.72%	1990.3	4.05%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-1.949e-02	1.0000	1051.0	5.25%	2776.1	5.65%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-1.851e-02	1.0000	466.0	2.33%	1278.9	2.60%
AT3G60490(AP2EREBP)/colamp-AT3G60490-DAP-Seq(GSE60143)/Homer	NNRCCGACANNNNNN	1e0	-1.843e-02	1.0000	132.0	0.66%	397.9	0.81%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e0	-1.832e-02	1.0000	1228.0	6.14%	3228.8	6.57%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e0	-1.769e-02	1.0000	283.0	1.42%	801.3	1.63%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-1.694e-02	1.0000	102.0	0.51%	316.5	0.64%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-1.680e-02	1.0000	1943.0	9.71%	5038.9	10.25%
HuR(?)/HEK293-HuR-CLIP-Seq(GSE87887)/Homer	BTTTGGTTTG	1e0	-1.630e-02	1.0000	6832.0	34.16%	17213.0	35.01%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-1.599e-02	1.0000	856.0	4.28%	2286.3	4.65%
RAP211(AP2EREBP)/colamp-RAP211-DAP-Seq(GSE60143)/Homer	RGCCGGCYWW	1e0	-1.469e-02	1.0000	2383.0	11.92%	6151.5	12.51%
AS2(LOBAS2)/col-AS2-DAP-Seq(GSE60143)/Homer	CCGDAAWWHMCGSCG	1e0	-1.420e-02	1.0000	33.0	0.17%	121.1	0.25%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	-1.393e-02	1.0000	10.0	0.05%	48.2	0.10%
AT2G38300(G2like)/col-AT2G38300-DAP-Seq(GSE60143)/Homer	ADRGAATGTT	1e0	-1.321e-02	1.0000	2460.0	12.30%	6350.5	12.92%
RKD2(RWPRK)/colamp-RKD2-DAP-Seq(GSE60143)/Homer	GACKTTTCRDCTTCC	1e0	-1.210e-02	1.0000	889.0	4.45%	2380.5	4.84%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e0	-1.146e-02	1.0000	1380.0	6.90%	3633.0	7.39%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-1.138e-02	1.0000	1400.0	7.00%	3684.9	7.50%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-1.103e-02	1.0000	2710.0	13.55%	6987.4	14.21%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e0	-1.096e-02	1.0000	2727.0	13.63%	7031.0	14.30%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-1.075e-02	1.0000	1266.0	6.33%	3346.4	6.81%
HY5(bZIP)/colamp-HY5-DAP-Seq(GSE60143)/Homer	RRTSACGTSD	1e0	-9.839e-03	1.0000	645.0	3.23%	1759.4	3.58%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-9.787e-03	1.0000	449.0	2.25%	1250.1	2.54%
TGA5(bZIP)/col-TGA5-DAP-Seq(GSE60143)/Homer	NNGATGACGTCATCN	1e0	-9.677e-03	1.0000	88.0	0.44%	284.8	0.58%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-9.302e-03	1.0000	1665.0	8.33%	4364.1	8.88%
bHLH74(bHLH)/col-bHLH74-DAP-Seq(GSE60143)/Homer	DRATCACGTGAB	1e0	-8.939e-03	1.0000	209.0	1.04%	617.6	1.26%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-8.120e-03	1.0000	94.0	0.47%	303.7	0.62%
NAM(NAC)/col-NAM-DAP-Seq(GSE60143)/Homer	RGTTRCGTRW	1e0	-7.576e-03	1.0000	989.0	4.95%	2652.4	5.40%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-7.567e-03	1.0000	327.0	1.64%	935.1	1.90%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	-7.551e-03	1.0000	1329.0	6.64%	3520.6	7.16%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-7.245e-03	1.0000	224.0	1.12%	661.8	1.35%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-7.086e-03	1.0000	759.0	3.79%	2063.8	4.20%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-6.945e-03	1.0000	363.0	1.81%	1032.8	2.10%
bZIP48(bZIP)/colamp-bZIP48-DAP-Seq(GSE60143)/Homer	DDWWKVTSACGTGGC	1e0	-6.940e-03	1.0000	309.0	1.54%	889.6	1.81%
PTF1(TCP)/colamp-PTF1-DAP-Seq(GSE60143)/Homer	RDDGGGACCACA	1e0	-5.800e-03	1.0000	62.0	0.31%	215.8	0.44%
bZIP28(bZIP)/col-bZIP28-DAP-Seq(GSE60143)/Homer	TGCCACGTSABH	1e0	-5.798e-03	1.0000	196.0	0.98%	589.1	1.20%
GBF6(bZIP)/colamp-GBF6-DAP-Seq(GSE60143)/Homer	WWTGMCACGTCABCW	1e0	-5.579e-03	1.0000	165.0	0.83%	505.2	1.03%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e0	-5.334e-03	1.0000	1336.0	6.68%	3551.9	7.22%
ABF1(bZIP)/Arabidopsis-ABF1-ChIP-Seq(GSE80564)/Homer	CACGTGGC	1e0	-4.924e-03	1.0000	901.0	4.50%	2440.6	4.96%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-4.744e-03	1.0000	3360.0	16.80%	8662.9	17.62%
TGA9(bZIP)/colamp-TGA9-DAP-Seq(GSE60143)/Homer	VTGACGTC	1e0	-4.694e-03	1.0000	1382.0	6.91%	3673.6	7.47%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e0	-4.371e-03	1.0000	2862.0	14.31%	7417.2	15.09%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-4.354e-03	1.0000	151.0	0.76%	470.4	0.96%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-3.868e-03	1.0000	60.0	0.30%	213.6	0.43%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	-3.801e-03	1.0000	14.0	0.07%	69.6	0.14%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e0	-3.717e-03	1.0000	235.0	1.18%	702.1	1.43%
O2(bZIP)/Corn-O2-ChIP-Seq(GSE63991)/Homer	GCTGACGTGGCA	1e0	-3.621e-03	1.0000	109.0	0.55%	355.1	0.72%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-3.553e-03	1.0000	1531.0	7.66%	4063.1	8.26%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-3.506e-03	1.0000	909.0	4.54%	2471.3	5.03%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e0	-3.049e-03	1.0000	1860.0	9.30%	4905.3	9.98%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-2.974e-03	1.0000	436.0	2.18%	1243.5	2.53%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	-2.765e-03	1.0000	2002.0	10.01%	5269.8	10.72%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-2.469e-03	1.0000	65.0	0.33%	232.3	0.47%
CDM1(C3H)/colamp-CDM1-DAP-Seq(GSE60143)/Homer	CCGAWAWTWTCGGAN	1e0	-2.352e-03	1.0000	29.0	0.14%	122.5	0.25%
AREB3(bZIP)/col-AREB3-DAP-Seq(GSE60143)/Homer	NKGMCACGTGDCMNN	1e0	-2.302e-03	1.0000	227.0	1.14%	688.6	1.40%
AT1G20910(ARID)/col-AT1G20910-DAP-Seq(GSE60143)/Homer	THAATTRAWN	1e0	-2.252e-03	1.0000	2003.0	10.02%	5280.8	10.74%
ANAC038(NAC)/col-ANAC038-DAP-Seq(GSE60143)/Homer	ACACGTWAYC	1e0	-2.230e-03	1.0000	2874.0	14.37%	7480.5	15.22%
SeqBias: polyA-repeat	AAAAAAAAAA	1e0	-2.135e-03	1.0000	19435.0	97.17%	47959.3	97.55%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e0	-2.015e-03	1.0000	722.0	3.61%	2002.3	4.07%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-1.822e-03	1.0000	1008.0	5.04%	2746.5	5.59%
ATHB13(Homeobox)/col-ATHB13-DAP-Seq(GSE60143)/Homer	CAATAATT	1e0	-1.622e-03	1.0000	1564.0	7.82%	4176.6	8.50%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e0	-1.602e-03	1.0000	652.0	3.26%	1825.5	3.71%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-1.453e-03	1.0000	6966.0	34.83%	17709.5	36.02%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-1.439e-03	1.0000	296.0	1.48%	883.3	1.80%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-1.430e-03	1.0000	155.0	0.78%	496.6	1.01%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-1.405e-03	1.0000	405.0	2.02%	1176.3	2.39%
bZIP53(bZIP)/colamp-bZIP53-DAP-Seq(GSE60143)/Homer	NDNHSACGTGKMNNN	1e0	-1.365e-03	1.0000	231.0	1.16%	707.2	1.44%
SFP1/SacCer-Promoters/Homer	DDAAAAATTTTY	1e0	-1.311e-03	1.0000	106.0	0.53%	359.0	0.73%
TCP3(TCP)/colamp-TCP3-DAP-Seq(GSE60143)/Homer	WGTGGTCCCAAHWWW	1e0	-1.301e-03	1.0000	189.0	0.95%	592.7	1.21%
ABF2(bZIP)/col-ABF2-DAP-Seq(GSE60143)/Homer	KGMCACGTGDCMHHH	1e0	-1.292e-03	1.0000	146.0	0.73%	472.7	0.96%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e0	-1.216e-03	1.0000	1082.0	5.41%	2949.8	6.00%
MYB113(MYB)/col-MYB113-DAP-Seq(GSE60143)/Homer	HNDAWTCMGTTAYWN	1e0	-9.540e-04	1.0000	786.0	3.93%	2188.1	4.45%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e0	-8.570e-04	1.0000	1612.0	8.06%	4321.6	8.79%
bZIP68(bZIP)/col-bZIP68-DAP-Seq(GSE60143)/Homer	WGCCACGTGK	1e0	-7.710e-04	1.0000	249.0	1.24%	765.6	1.56%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-7.350e-04	1.0000	1599.0	7.99%	4293.1	8.73%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e0	-6.720e-04	1.0000	2243.0	11.21%	5937.1	12.08%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e0	-5.400e-04	1.0000	491.0	2.46%	1424.5	2.90%
TGA1(bZIP)/colamp-TGA1-DAP-Seq(GSE60143)/Homer	TGACGTCAKC	1e0	-5.230e-04	1.0000	394.0	1.97%	1165.1	2.37%
SUT1?/SacCer-Promoters/Homer	CCCCGCGC	1e0	-4.950e-04	1.0000	8530.0	42.65%	21639.5	44.02%
bZIP16(bZIP)/colamp-bZIP16-DAP-Seq(GSE60143)/Homer	TGCCACGTGD	1e0	-4.940e-04	1.0000	184.0	0.92%	591.7	1.20%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	-4.540e-04	1.0000	284.0	1.42%	869.4	1.77%
MYB3R5(MYB)/col-MYB3R5-DAP-Seq(GSE60143)/Homer	THYAACGGTHAWAWT	1e0	-3.770e-04	1.0000	44.0	0.22%	183.7	0.37%
NAP(NAC)/col-NAP-DAP-Seq(GSE60143)/Homer	ARGTTACGTRTN	1e0	-3.610e-04	1.0000	767.0	3.84%	2162.5	4.40%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)	NNAYTTCCTGHN	1e0	-2.390e-04	1.0000	2101.0	10.51%	5615.0	11.42%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e0	-1.930e-04	1.0000	455.0	2.27%	1347.2	2.74%
AARE(HLH)/mES-cMyc-ChIP-Seq/Homer	GATTGCATCA	1e0	-1.480e-04	1.0000	128.0	0.64%	445.2	0.91%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-1.390e-04	1.0000	4.0	0.02%	43.0	0.09%
TGA6(bZIP)/colamp-TGA6-DAP-Seq(GSE60143)/Homer	TGACGTCABC	1e0	-1.080e-04	1.0000	527.0	2.63%	1551.6	3.16%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-1.060e-04	1.0000	3552.0	17.76%	9322.6	18.96%
dHNF4(NR)/Fly-HNF4-ChIP-Seq(GSE73675)/Homer	GGTCCAAAGTCCAMT	1e0	-8.100e-05	1.0000	102.0	0.51%	374.7	0.76%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-4.800e-05	1.0000	1733.0	8.67%	4723.9	9.61%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e0	-4.000e-05	1.0000	1189.0	5.95%	3319.6	6.75%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e0	-3.800e-05	1.0000	500.0	2.50%	1497.9	3.05%
E-box/Arabidopsis-Promoters/Homer	GCCACGTG	1e0	-3.600e-05	1.0000	372.0	1.86%	1149.6	2.34%
bZIP50(bZIP)/colamp-bZIP50-DAP-Seq(GSE60143)/Homer	GATGACGTCA	1e0	-3.400e-05	1.0000	961.0	4.81%	2726.8	5.55%
At2g45680(TCP)/colamp-At2g45680-DAP-Seq(GSE60143)/Homer	GTGGGNCCCACNDND	1e0	-3.400e-05	1.0000	49.0	0.24%	216.3	0.44%
TGA2(bZIP)/colamp-TGA2-DAP-Seq(GSE60143)/Homer	ACGTCAYCHH	1e0	-2.700e-05	1.0000	457.0	2.28%	1387.0	2.82%
TGA10(bZIP)/colamp-TGA10-DAP-Seq(GSE60143)/Homer	ATGACGTC	1e0	-2.000e-05	1.0000	535.0	2.67%	1603.9	3.26%
bZIP44(bZIP)/colamp-bZIP44-DAP-Seq(GSE60143)/Homer	NDTGCCACGTCAGCH	1e0	-1.900e-05	1.0000	9.0	0.04%	74.6	0.15%
SeqBias: G/A bias	RRRRRRRRRR	1e0	-1.800e-05	1.0000	19961.0	99.80%	49124.5	99.92%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e0	-1.000e-05	1.0000	738.0	3.69%	2160.3	4.39%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e0	-8.000e-06	1.0000	2423.0	12.12%	6549.0	13.32%
SeqBias: CA-repeat	CACACACACA	1e0	-5.000e-06	1.0000	8321.0	41.60%	21353.8	43.44%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e0	-4.000e-06	1.0000	1719.0	8.60%	4755.6	9.67%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-3.000e-06	1.0000	217.0	1.08%	744.2	1.51%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e0	-2.000e-06	1.0000	2788.0	13.94%	7532.7	15.32%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e0	-1.000e-06	1.0000	1430.0	7.15%	4031.6	8.20%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e0	-1.000e-06	1.0000	2141.0	10.71%	5883.4	11.97%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	-1.000e-06	1.0000	243.0	1.21%	832.9	1.69%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e0	-1.000e-06	1.0000	1720.0	8.60%	4795.7	9.75%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e0	-1.000e-06	1.0000	1899.0	9.50%	5268.4	10.72%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-1.000e-06	1.0000	68.0	0.34%	306.4	0.62%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e0	-0.000e+00	1.0000	3439.0	17.20%	9231.7	18.78%
ABI5(bZIP)/col-ABI5-DAP-Seq(GSE60143)/Homer	GCCACGTG	1e0	-0.000e+00	1.0000	265.0	1.32%	910.9	1.85%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e0	-0.000e+00	1.0000	2491.0	12.46%	6833.9	13.90%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-0.000e+00	1.0000	822.0	4.11%	2460.1	5.00%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e0	-0.000e+00	1.0000	2349.0	11.74%	6470.6	13.16%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e0	-0.000e+00	1.0000	762.0	3.81%	2301.3	4.68%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e0	-0.000e+00	1.0000	1447.0	7.23%	4133.6	8.41%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	-0.000e+00	1.0000	187.0	0.94%	692.5	1.41%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-0.000e+00	1.0000	2376.0	11.88%	6572.2	13.37%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e0	-0.000e+00	1.0000	771.0	3.85%	2360.1	4.80%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e0	-0.000e+00	1.0000	667.0	3.33%	2082.2	4.24%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e0	-0.000e+00	1.0000	2071.0	10.36%	5827.1	11.85%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e0	-0.000e+00	1.0000	1122.0	5.61%	3339.7	6.79%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e0	-0.000e+00	1.0000	2127.0	10.63%	6006.0	12.22%
 Ik-1	NHTTGGGAATRCC	1e0	0.000e+00	1.0000	20000.0	100.00%	49162.0	100.00%
SeqBias: CG bias	SSSSSSSSSS	1e0	0.000e+00	1.0000	11300.0	56.50%	29514.4	60.03%
bZIP42(bZIP)/colamp-bZIP42-DAP-Seq(GSE60143)/Homer	GCCACGTCAGCA	1e0	0.000e+00	1.0000	0.0	0.00%	13.6	0.03%
AT4G12670(MYBrelated)/col-AT4G12670-DAP-Seq(GSE60143)/Homer	AGGGTTTAGGGTTTA	1e0	0.000e+00	1.0000	0.0	0.00%	1.3	0.00%