Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 20000)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 19902)	% of Background Sequences with Motif
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e-112	-2.596e+02	0.0000	1794.0	8.97%	710.5	3.57%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e-98	-2.270e+02	0.0000	659.0	3.29%	107.0	0.54%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e-98	-2.270e+02	0.0000	659.0	3.29%	107.0	0.54%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e-96	-2.233e+02	0.0000	552.0	2.76%	67.0	0.34%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e-56	-1.311e+02	0.0000	264.0	1.32%	18.3	0.09%
dHNF4(NR)/Fly-HNF4-ChIP-Seq(GSE73675)/Homer	GGTCCAAAGTCCAMT	1e-56	-1.306e+02	0.0000	405.0	2.02%	73.8	0.37%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e-48	-1.120e+02	0.0000	978.0	4.89%	437.7	2.20%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-33	-7.811e+01	0.0000	2370.0	11.85%	1630.0	8.18%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e-32	-7.547e+01	0.0000	472.0	2.36%	173.1	0.87%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e-31	-7.318e+01	0.0000	498.0	2.49%	193.1	0.97%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-31	-7.140e+01	0.0000	3220.0	16.10%	2399.1	12.04%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e-27	-6.289e+01	0.0000	4042.0	20.21%	3188.1	16.00%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-27	-6.228e+01	0.0000	2316.0	11.58%	1659.3	8.33%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-25	-5.879e+01	0.0000	2690.0	13.45%	2003.9	10.06%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e-25	-5.823e+01	0.0000	2634.0	13.17%	1957.0	9.82%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e-22	-5.287e+01	0.0000	2207.0	11.04%	1614.2	8.10%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e-22	-5.234e+01	0.0000	1867.0	9.34%	1324.7	6.65%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-22	-5.176e+01	0.0000	1839.0	9.20%	1303.8	6.54%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-18	-4.145e+01	0.0000	1547.0	7.74%	1106.1	5.55%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e-17	-4.069e+01	0.0000	1157.0	5.79%	781.1	3.92%
PHA-4(Forkhead)/cElegans-Embryos-PHA4-ChIP-Seq(modEncode)/Homer	KTGTTTGC	1e-16	-3.832e+01	0.0000	5742.0	28.71%	4977.8	24.98%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e-16	-3.774e+01	0.0000	569.0	2.84%	322.2	1.62%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e-14	-3.446e+01	0.0000	459.0	2.30%	249.6	1.25%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e-14	-3.345e+01	0.0000	914.0	4.57%	612.7	3.08%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e-13	-3.218e+01	0.0000	6609.0	33.05%	5876.5	29.50%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e-13	-3.164e+01	0.0000	188.0	0.94%	68.5	0.34%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e-10	-2.425e+01	0.0000	992.0	4.96%	723.5	3.63%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e-10	-2.419e+01	0.0000	3670.0	18.35%	3164.1	15.88%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e-9	-2.280e+01	0.0000	2302.0	11.51%	1905.8	9.57%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e-9	-2.202e+01	0.0000	1229.0	6.14%	943.5	4.74%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e-8	-2.058e+01	0.0000	1887.0	9.44%	1545.6	7.76%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e-8	-2.057e+01	0.0000	3390.0	16.95%	2941.2	14.76%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e-8	-2.047e+01	0.0000	2003.0	10.02%	1652.5	8.29%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e-8	-1.868e+01	0.0000	296.0	1.48%	173.8	0.87%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e-7	-1.836e+01	0.0000	1227.0	6.13%	967.4	4.86%
NLP7(RWPRK)/col-NLP7-DAP-Seq(GSE60143)/Homer	TGRCCYTTCR	1e-7	-1.705e+01	0.0000	3093.0	15.47%	2703.9	13.57%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e-7	-1.680e+01	0.0000	702.0	3.51%	516.2	2.59%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e-7	-1.625e+01	0.0000	420.0	2.10%	281.6	1.41%
GATA20(C2C2gata)/colamp-GATA20-DAP-Seq(GSE60143)/Homer	TNGATCNDNM	1e-7	-1.616e+01	0.0000	2426.0	12.13%	2087.9	10.48%
WRKY25(WRKY)/colamp-WRKY25-DAP-Seq(GSE60143)/Homer	NNNNHRGTCAAMNNN	1e-6	-1.586e+01	0.0000	1838.0	9.19%	1544.5	7.75%
GT2(Trihelix)/colamp-GT2-DAP-Seq(GSE60143)/Homer	AMGGTAAAWWWN	1e-6	-1.561e+01	0.0000	1858.0	9.29%	1565.2	7.86%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e-6	-1.546e+01	0.0000	2228.0	11.14%	1910.4	9.59%
GATA15(C2C2gata)/col-GATA15-DAP-Seq(GSE60143)/Homer	KATGATCA	1e-6	-1.481e+01	0.0000	1769.0	8.85%	1491.9	7.49%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e-6	-1.445e+01	0.0000	2071.0	10.36%	1775.9	8.91%
NGA4(ABI3VP1)/col-NGA4-DAP-Seq(GSE60143)/Homer	TKNTCAGGTG	1e-5	-1.376e+01	0.0000	3277.0	16.38%	2921.3	14.66%
RBFox2(?)/Heart-RBFox2-CLIP-Seq(GSE57926)/Homer	TGCATGCA	1e-5	-1.298e+01	0.0000	2933.0	14.67%	2605.6	13.08%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e-5	-1.291e+01	0.0000	1786.0	8.93%	1527.1	7.66%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e-5	-1.258e+01	0.0001	1929.0	9.64%	1664.3	8.35%
WRKY71(WRKY)/col-WRKY71-DAP-Seq(GSE60143)/Homer	CKTTGACYWW	1e-5	-1.223e+01	0.0001	1326.0	6.63%	1109.4	5.57%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e-5	-1.222e+01	0.0001	2274.0	11.37%	1992.5	10.00%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-5	-1.184e+01	0.0001	1122.0	5.61%	926.0	4.65%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e-5	-1.179e+01	0.0001	1472.0	7.36%	1248.3	6.27%
WRKY55(WRKY)/col-WRKY55-DAP-Seq(GSE60143)/Homer	NCGTTGACTT	1e-4	-1.150e+01	0.0002	1805.0	9.03%	1561.4	7.84%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e-4	-1.145e+01	0.0002	900.0	4.50%	728.5	3.66%
WRKY28(WRKY)/col-WRKY28-DAP-Seq(GSE60143)/Homer	BGTTGACTWH	1e-4	-1.123e+01	0.0002	2119.0	10.60%	1859.0	9.33%
AtIDD11(C2H2)/colamp-AtIDD11-DAP-Seq(GSE60143)/Homer	TTTGTCGTTT	1e-4	-1.107e+01	0.0003	528.0	2.64%	400.5	2.01%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e-4	-1.105e+01	0.0003	1460.0	7.30%	1245.6	6.25%
WRKY15(WRKY)/col-WRKY15-DAP-Seq(GSE60143)/Homer	VGTTGACTWW	1e-4	-1.098e+01	0.0003	1613.0	8.06%	1388.2	6.97%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e-4	-1.097e+01	0.0003	3104.0	15.52%	2798.3	14.05%
WRKY6(WRKY)/colamp-WRKY6-DAP-Seq(GSE60143)/Homer	NCGTTGACTWWD	1e-4	-1.093e+01	0.0003	1450.0	7.25%	1237.1	6.21%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e-4	-1.072e+01	0.0003	522.0	2.61%	397.9	2.00%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e-4	-1.014e+01	0.0006	872.0	4.36%	714.0	3.58%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e-4	-1.010e+01	0.0006	1529.0	7.65%	1320.0	6.63%
WRKY42(WRKY)/colamp-WRKY42-DAP-Seq(GSE60143)/Homer	NAAAGTCAACGN	1e-4	-9.983e+00	0.0007	555.0	2.77%	431.2	2.16%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e-4	-9.642e+00	0.0009	435.0	2.17%	328.4	1.65%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e-4	-9.495e+00	0.0011	1271.0	6.35%	1087.5	5.46%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e-4	-9.428e+00	0.0011	600.0	3.00%	475.1	2.38%
WRKY18(WRKY)/col-WRKY18-DAP-Seq(GSE60143)/Homer	NNNTTGACYWNNNNN	1e-4	-9.407e+00	0.0011	2462.0	12.31%	2211.0	11.10%
AT3G25990(Trihelix)/colamp-AT3G25990-DAP-Seq(GSE60143)/Homer	TTAACCATAG	1e-4	-9.332e+00	0.0012	1031.0	5.16%	867.8	4.36%
WRKY3(WRKY)/col-WRKY3-DAP-Seq(GSE60143)/Homer	NCKTTGACYDDN	1e-3	-8.839e+00	0.0019	1007.0	5.04%	850.1	4.27%
EMB1789(C3H)/col-EMB1789-DAP-Seq(GSE60143)/Homer	TWTTTACCGYND	1e-3	-8.825e+00	0.0019	646.0	3.23%	521.9	2.62%
Zelda(Zf)/Embryo-zld-ChIP-Seq(GSE65441)/Homer	KBCTACCTGW	1e-3	-8.768e+00	0.0020	416.0	2.08%	317.4	1.59%
AT5G47660(Trihelix)/colamp-AT5G47660-DAP-Seq(GSE60143)/Homer	AWTTTTACCG	1e-3	-8.744e+00	0.0020	2475.0	12.38%	2233.8	11.21%
WRKY24(WRKY)/colamp-WRKY24-DAP-Seq(GSE60143)/Homer	CGTTGACTWW	1e-3	-8.730e+00	0.0020	1419.0	7.09%	1234.2	6.19%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e-3	-8.673e+00	0.0021	123.0	0.61%	72.9	0.37%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e-3	-8.459e+00	0.0026	699.0	3.50%	572.2	2.87%
GATA4(C2C2gata)/col-GATA4-DAP-Seq(GSE60143)/Homer	DDWTYAGATCTR	1e-3	-8.415e+00	0.0027	827.0	4.13%	689.8	3.46%
At5g66730(C2H2)/colamp-At5g66730-DAP-Seq(GSE60143)/Homer	TTTGTCKTTTTK	1e-3	-8.409e+00	0.0027	419.0	2.10%	322.6	1.62%
WRKY33(WRKY)/col-WRKY33-DAP-Seq(GSE60143)/Homer	CGTTGACYAW	1e-3	-8.263e+00	0.0030	1293.0	6.46%	1122.5	5.63%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e-3	-8.141e+00	0.0034	443.0	2.21%	345.4	1.73%
WRKY29(WRKY)/colamp-WRKY29-DAP-Seq(GSE60143)/Homer	MGTTGACTTT	1e-3	-8.116e+00	0.0034	1619.0	8.09%	1430.3	7.18%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e-3	-7.972e+00	0.0039	2970.0	14.85%	2721.4	13.66%
WRKY75(WRKY)/col-WRKY75-DAP-Seq(GSE60143)/Homer	CGTTGACTWW	1e-3	-7.822e+00	0.0045	1551.0	7.75%	1370.5	6.88%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e-3	-7.506e+00	0.0060	2627.0	13.13%	2400.6	12.05%
WRKY27(WRKY)/colamp-WRKY27-DAP-Seq(GSE60143)/Homer	NHGTTGACYTWD	1e-3	-7.456e+00	0.0063	1397.0	6.98%	1230.7	6.18%
WRKY31(WRKY)/colamp-WRKY31-DAP-Seq(GSE60143)/Homer	NCGTTGACTWWK	1e-3	-7.452e+00	0.0063	1203.0	6.02%	1048.8	5.26%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e-3	-7.325e+00	0.0070	1645.0	8.22%	1466.8	7.36%
GTL1(Trihelix)/colamp-GTL1-DAP-Seq(GSE60143)/Homer	WWTTTACCKY	1e-3	-7.212e+00	0.0077	1836.0	9.18%	1649.1	8.28%
MYB44(MYB)/colamp-MYB44-DAP-Seq(GSE60143)/Homer	CVGTTWWKTCNGTTA	1e-3	-7.194e+00	0.0078	128.0	0.64%	81.9	0.41%
EFL-1(E2F)/cElegans-L1-EFL1-ChIP-Seq(modEncode)/Homer	TGCAARYGCGCTCYA	1e-3	-7.157e+00	0.0080	39.0	0.19%	15.4	0.08%
WRKY43(WRKY)/colamp-WRKY43-DAP-Seq(GSE60143)/Homer	NCGTTGACTTTT	1e-3	-7.075e+00	0.0086	617.0	3.08%	510.5	2.56%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e-3	-6.916e+00	0.0099	362.0	1.81%	282.6	1.42%
ATHB34(ZFHD)/colamp-ATHB34-DAP-Seq(GSE60143)/Homer	TRATTARS	1e-2	-6.713e+00	0.0120	1181.0	5.91%	1037.7	5.21%
bZIP52(bZIP)/colamp-bZIP52-DAP-Seq(GSE60143)/Homer	NDNHCAGCTGTCANN	1e-2	-6.697e+00	0.0121	1760.0	8.80%	1585.6	7.96%
AT3G51470(DBP)/col-AT3G51470-DAP-Seq(GSE60143)/Homer	TTWHGGTGCACC	1e-2	-6.556e+00	0.0138	1643.0	8.21%	1476.9	7.41%
WIP5(C2H2)/colamp-WIP5-DAP-Seq(GSE60143)/Homer	TDTTCTCMAGGT	1e-2	-6.519e+00	0.0142	1403.0	7.02%	1249.2	6.27%
WRKY50(WRKY)/col-WRKY50-DAP-Seq(GSE60143)/Homer	NNTTGACTWNNGNNN	1e-2	-6.491e+00	0.0144	1486.0	7.43%	1328.1	6.67%
At4g32800(AP2EREBP)/colamp-At4g32800-DAP-Seq(GSE60143)/Homer	DYCACCGACAHWWWH	1e-2	-6.417e+00	0.0154	60.0	0.30%	31.0	0.16%
MGP(C2H2)/colamp-MGP-DAP-Seq(GSE60143)/Homer	TTTTGTCGTTTW	1e-2	-6.273e+00	0.0176	368.0	1.84%	292.9	1.47%
TGA5(bZIP)/col-TGA5-DAP-Seq(GSE60143)/Homer	NNGATGACGTCATCN	1e-2	-6.126e+00	0.0202	428.0	2.14%	347.2	1.74%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e-2	-6.044e+00	0.0216	2821.0	14.11%	2616.3	13.13%
TGA3(bZIP)/colamp-TGA3-DAP-Seq(GSE60143)/Homer	WTGATGACGTCATCW	1e-2	-5.935e+00	0.0239	336.0	1.68%	266.8	1.34%
RAP212(AP2EREBP)/col-RAP212-DAP-Seq(GSE60143)/Homer	CGCCGCCATTTT	1e-2	-5.899e+00	0.0246	1393.0	6.97%	1249.1	6.27%
WRKY47(WRKY)/colamp-WRKY47-DAP-Seq(GSE60143)/Homer	WAAGTCAACGBT	1e-2	-5.870e+00	0.0250	369.0	1.85%	296.6	1.49%
WRKY30(WRKY)/colamp-WRKY30-DAP-Seq(GSE60143)/Homer	CGTTGACTTN	1e-2	-5.868e+00	0.0250	379.0	1.90%	305.9	1.54%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e-2	-5.661e+00	0.0303	3860.0	19.30%	3634.6	18.24%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e-2	-5.645e+00	0.0305	1626.0	8.13%	1476.0	7.41%
WRKY20(WRKY)/col-WRKY20-DAP-Seq(GSE60143)/Homer	CKTTGACYWD	1e-2	-5.625e+00	0.0308	1169.0	5.85%	1041.6	5.23%
WRKY26(WRKY)/colamp-WRKY26-DAP-Seq(GSE60143)/Homer	CGTTGACTWDKN	1e-2	-5.554e+00	0.0328	802.0	4.01%	697.8	3.50%
Trl(Zf)/S2-GAGAfactor-ChIP-Seq(GSE40646)/Homer	RGAGAGAG	1e-2	-5.461e+00	0.0356	4338.0	21.69%	4106.5	20.61%
AT3G52440(C2C2dof)/colamp-AT3G52440-DAP-Seq(GSE60143)/Homer	DTHACTTTTT	1e-2	-5.405e+00	0.0373	4140.0	20.70%	3914.5	19.65%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e-2	-5.388e+00	0.0376	514.0	2.57%	432.7	2.17%
GT3a(Trihelix)/col-GT3a-DAP-Seq(GSE60143)/Homer	WNACACGTGTYWWAW	1e-2	-5.328e+00	0.0396	323.0	1.62%	259.8	1.30%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e-2	-5.181e+00	0.0455	1474.0	7.37%	1338.6	6.72%
AT3G42860(zfGRF)/col-AT3G42860-DAP-Seq(GSE60143)/Homer	CGTTGACTTN	1e-2	-4.932e+00	0.0578	378.0	1.89%	312.8	1.57%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e-2	-4.837e+00	0.0630	245.0	1.23%	193.6	0.97%
AT2G38300(G2like)/col-AT2G38300-DAP-Seq(GSE60143)/Homer	ADRGAATGTT	1e-2	-4.796e+00	0.0651	2206.0	11.03%	2049.0	10.28%
At5g08750(C3H)/col-At5g08750-DAP-Seq(GSE60143)/Homer	NWDTTGCGGCTR	1e-2	-4.790e+00	0.0651	599.0	3.00%	518.0	2.60%
Dorsal(RHD)/Embryo-dl-ChIP-Seq(GSE65441)/Homer	GGGAAAAMCCCG	1e-2	-4.758e+00	0.0665	362.0	1.81%	299.6	1.50%
WRKY14(WRKY)/colamp-WRKY14-DAP-Seq(GSE60143)/Homer	NCGTTGACTTTN	1e-2	-4.702e+00	0.0697	803.0	4.01%	709.2	3.56%
RKD2(RWPRK)/colamp-RKD2-DAP-Seq(GSE60143)/Homer	GACKTTTCRDCTTCC	1e-2	-4.660e+00	0.0721	937.0	4.69%	836.8	4.20%
BPC1(BBRBPC)/colamp-BPC1-DAP-Seq(GSE60143)/Homer	GARGAGAGAGAA	1e-2	-4.630e+00	0.0737	1002.0	5.01%	898.9	4.51%
At1g76110(ARID)/colamp-At1g76110-DAP-Seq(GSE60143)/Homer	ATTTAATG	1e-2	-4.623e+00	0.0737	839.0	4.20%	744.6	3.74%
WRKY11(WRKY)/col-WRKY11-DAP-Seq(GSE60143)/Homer	SCGTTGACTTTN	1e-1	-4.559e+00	0.0778	209.0	1.04%	163.0	0.82%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e-1	-4.540e+00	0.0788	219.0	1.09%	173.0	0.87%
bZIP69(bZIP)/col-bZIP69-DAP-Seq(GSE60143)/Homer	GACAGCTGKCAW	1e-1	-4.473e+00	0.0835	180.0	0.90%	138.3	0.69%
ERF5(AP2EREBP)/colamp-ERF5-DAP-Seq(GSE60143)/Homer	DCMGCCGCCA	1e-1	-4.434e+00	0.0862	1105.0	5.53%	1000.0	5.02%
SPL9(SBP)/colamp-SPL9-DAP-Seq(GSE60143)/Homer	BTGTACTT	1e-1	-4.402e+00	0.0882	2431.0	12.16%	2276.7	11.43%
ATHB33(ZFHD)/col-ATHB33-DAP-Seq(GSE60143)/Homer	NGTRATTAAK	1e-1	-4.331e+00	0.0940	1894.0	9.47%	1758.3	8.82%
WRKY65(WRKY)/colamp-WRKY65-DAP-Seq(GSE60143)/Homer	AWWWAGTCAACG	1e-1	-4.331e+00	0.0940	737.0	3.69%	652.8	3.28%
ANAC075(NAC)/col-ANAC075-DAP-Seq(GSE60143)/Homer	CTTSWWNWWSAAGYT	1e-1	-4.255e+00	0.0999	323.0	1.62%	268.1	1.35%
ERF9(AP2EREBP)/colamp-ERF9-DAP-Seq(GSE60143)/Homer	AWATGGCGGCGG	1e-1	-4.216e+00	0.1031	679.0	3.40%	599.2	3.01%
AT1G76880(Trihelix)/col-AT1G76880-DAP-Seq(GSE60143)/Homer	ACGGTAAAAW	1e-1	-4.179e+00	0.1062	590.0	2.95%	516.4	2.59%
RRTF1(AP2EREBP)/colamp-RRTF1-DAP-Seq(GSE60143)/Homer	CCGCCGCHATTT	1e-1	-4.168e+00	0.1065	344.0	1.72%	288.7	1.45%
TATA-box/SacCer-Promoters/Homer	BBHWTATATA	1e-1	-4.153e+00	0.1073	728.0	3.64%	646.9	3.25%
GAGA-repeat/Arabidopsis-Promoters/Homer	CTCTCTCTCY	1e-1	-4.045e+00	0.1188	1674.0	8.37%	1552.2	7.79%
ASHR1(ND)/col-ASHR1-DAP-Seq(GSE60143)/Homer	NTGGTGAN	1e-1	-4.030e+00	0.1196	1887.0	9.44%	1758.1	8.82%
AT4G18450(AP2EREBP)/col-AT4G18450-DAP-Seq(GSE60143)/Homer	ATGGCGGCKG	1e-1	-3.940e+00	0.1300	1007.0	5.04%	914.7	4.59%
AT3G10030(Trihelix)/colamp-AT3G10030-DAP-Seq(GSE60143)/Homer	GCCGTTAA	1e-1	-3.935e+00	0.1300	805.0	4.03%	722.3	3.63%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e-1	-3.883e+00	0.1356	985.0	4.92%	894.6	4.49%
ERF4(AP2EREBP)/colamp-ERF4-DAP-Seq(GSE60143)/Homer	WDWTGGCGGCGG	1e-1	-3.877e+00	0.1356	1904.0	9.52%	1779.0	8.93%
WRKY40(WRKY)/colamp-WRKY40-DAP-Seq(GSE60143)/Homer	AHWAGTCAAC	1e-1	-3.787e+00	0.1471	892.0	4.46%	807.9	4.05%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e-1	-3.765e+00	0.1493	563.0	2.81%	496.5	2.49%
ATHB20(Homeobox)/colamp-ATHB20-DAP-Seq(GSE60143)/Homer	CAATHATT	1e-1	-3.756e+00	0.1496	633.0	3.16%	562.9	2.83%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e-1	-3.734e+00	0.1519	199.0	1.00%	160.3	0.80%
SND2(NAC)/colamp-SND2-DAP-Seq(GSE60143)/Homer	CTTVWNNNWBAAGNW	1e-1	-3.726e+00	0.1521	555.0	2.77%	489.3	2.46%
LBD23(LOBAS2)/colamp-LBD23-DAP-Seq(GSE60143)/Homer	GCGNAWWWTNCGCYW	1e-1	-3.687e+00	0.1572	1556.0	7.78%	1446.9	7.26%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-1	-3.669e+00	0.1589	1454.0	7.27%	1349.0	6.77%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e-1	-3.645e+00	0.1616	2023.0	10.12%	1899.3	9.53%
CAMTA5(CAMTA)/col-CAMTA5-DAP-Seq(GSE60143)/Homer	ACGCGTTTTANACRC	1e-1	-3.640e+00	0.1616	388.0	1.94%	334.6	1.68%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e-1	-3.638e+00	0.1616	141.0	0.70%	109.7	0.55%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e-1	-3.607e+00	0.1646	209.0	1.04%	170.9	0.86%
MYB57(MYB)/col-MYB57-DAP-Seq(GSE60143)/Homer	TTACCTAACT	1e-1	-3.546e+00	0.1739	597.0	2.99%	532.0	2.67%
ANAC013(NAC)/col-ANAC013-DAP-Seq(GSE60143)/Homer	CTTGNNNNNCAAGNA	1e-1	-3.508e+00	0.1794	487.0	2.44%	428.3	2.15%
LOB(LOBAS2)/col-LOB-DAP-Seq(GSE60143)/Homer	CGCCGKAWWTTHCGS	1e-1	-3.488e+00	0.1817	491.0	2.46%	432.9	2.17%
FEA4(bZIP)/Corn-FEA4-ChIP-Seq(GSE61954)/Homer	TGACGTCACS	1e-1	-3.458e+00	0.1860	2307.0	11.54%	2180.8	10.95%
AT4G12670(MYBrelated)/col-AT4G12670-DAP-Seq(GSE60143)/Homer	AGGGTTTAGGGTTTA	1e-1	-3.456e+00	0.1860	5.0	0.03%	0.0	0.00%
DPL-1(E2F)/cElegans-Adult-ChIP-Seq(modEncode)/Homer	TAGCGCGC	1e-1	-3.408e+00	0.1932	1755.0	8.77%	1645.1	8.26%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e-1	-3.351e+00	0.2032	210.0	1.05%	173.5	0.87%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e-1	-3.341e+00	0.2041	1077.0	5.38%	992.1	4.98%
EGL-5(Homeobox)/cElegans-L3-EGL5-ChIP-Seq(modEncode)/Homer	ATTTAATGGG	1e-1	-3.262e+00	0.2194	1915.0	9.57%	1804.2	9.06%
ANAC004(NAC)/colamp-ANAC004-DAP-Seq(GSE60143)/Homer	WNCTTVYNNNRBAAG	1e-1	-3.189e+00	0.2346	423.0	2.11%	372.8	1.87%
AT5G59990(C2C2COlike)/colamp-AT5G59990-DAP-Seq(GSE60143)/Homer	TCTCAACCGTTCATT	1e-1	-3.186e+00	0.2346	26.0	0.13%	14.5	0.07%
ESE1(AP2EREBP)/col-ESE1-DAP-Seq(GSE60143)/Homer	GGCGGCGG	1e-1	-3.178e+00	0.2346	1680.0	8.40%	1578.5	7.92%
ATHB23(ZFHD)/col-ATHB23-DAP-Seq(GSE60143)/Homer	HTAATTARNN	1e-1	-3.173e+00	0.2346	1338.0	6.69%	1247.6	6.26%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e-1	-3.149e+00	0.2382	2102.0	10.51%	1989.3	9.98%
AGL13(MADS)/col-AGL13-DAP-Seq(GSE60143)/Homer	TWCCAWWTWTGGWAA	1e-1	-3.147e+00	0.2382	77.0	0.39%	56.3	0.28%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-1	-3.078e+00	0.2528	447.0	2.23%	396.9	1.99%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e-1	-3.071e+00	0.2529	679.0	3.40%	616.8	3.10%
dof43(C2C2dof)/colamp-dof43-DAP-Seq(GSE60143)/Homer	NAAAAAGTDA	1e-1	-3.060e+00	0.2543	2540.0	12.70%	2419.3	12.14%
CRF4(AP2EREBP)/colamp-CRF4-DAP-Seq(GSE60143)/Homer	CGCCGCCA	1e-1	-3.057e+00	0.2543	1297.0	6.49%	1210.2	6.07%
ATHB25(ZFHD)/colamp-ATHB25-DAP-Seq(GSE60143)/Homer	TAATTAVB	1e-1	-3.017e+00	0.2623	1684.0	8.42%	1586.5	7.96%
WUS1(Homeobox)/colamp-WUS1-DAP-Seq(GSE60143)/Homer	CAWTCATTCA	1e-1	-2.966e+00	0.2745	610.0	3.05%	552.2	2.77%
IDD7(C2H2)/col-IDD7-DAP-Seq(GSE60143)/Homer	TTTGTCKTTTTN	1e-1	-2.932e+00	0.2823	540.0	2.70%	486.5	2.44%
ERF10(AP2EREBP)/col-ERF10-DAP-Seq(GSE60143)/Homer	RTGGCGGCGG	1e-1	-2.865e+00	0.3002	1312.0	6.56%	1229.1	6.17%
PCF/Arabidopsis-Promoters/Homer	NNWWWTGGGCYTDDN	1e-1	-2.843e+00	0.3053	243.0	1.21%	208.1	1.04%
HDG7(HB)/col-HDG7-DAP-Seq(GSE60143)/Homer	WGCATTTAATGC	1e-1	-2.831e+00	0.3071	181.0	0.91%	151.8	0.76%
ANAC005(NAC)/col-ANAC005-DAP-Seq(GSE60143)/Homer	WVCTTVTWNHABAAG	1e-1	-2.810e+00	0.3119	558.0	2.79%	505.9	2.54%
MYB107(MYB)/col-MYB107-DAP-Seq(GSE60143)/Homer	RGTWGGTRRR	1e-1	-2.801e+00	0.3129	2151.0	10.76%	2047.7	10.28%
At5g65130(AP2EREBP)/colamp-At5g65130-DAP-Seq(GSE60143)/Homer	CCRCCGACAWTN	1e-1	-2.794e+00	0.3133	391.0	1.96%	347.9	1.75%
ATHB24(ZFHD)/colamp-ATHB24-DAP-Seq(GSE60143)/Homer	TAATTAAS	1e-1	-2.790e+00	0.3133	1062.0	5.31%	989.4	4.97%
AT2G40260(G2like)/colamp-AT2G40260-DAP-Seq(GSE60143)/Homer	WAAAYATTCTTT	1e-1	-2.739e+00	0.3273	2415.0	12.07%	2307.9	11.58%
TGA10(bZIP)/colamp-TGA10-DAP-Seq(GSE60143)/Homer	ATGACGTC	1e-1	-2.739e+00	0.3273	1249.0	6.25%	1172.0	5.88%
AT1G23810(Orphan)/col-AT1G23810-DAP-Seq(GSE60143)/Homer	TTCTAGAAGSTTCTA	1e-1	-2.737e+00	0.3273	32.0	0.16%	21.0	0.11%
HuR(?)/HEK293-HuR-CLIP-Seq(GSE87887)/Homer	BTTTGGTTTG	1e-1	-2.733e+00	0.3273	6294.0	31.47%	6129.5	30.76%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e-1	-2.722e+00	0.3273	96.0	0.48%	75.5	0.38%
At4g28140(AP2EREBP)/colamp-At4g28140-DAP-Seq(GSE60143)/Homer	DCCACCGACCAW	1e-1	-2.721e+00	0.3273	373.0	1.86%	331.9	1.67%
ANAC057(NAC)/colamp-ANAC057-DAP-Seq(GSE60143)/Homer	DVCKTGNNNNNCAMG	1e-1	-2.706e+00	0.3276	888.0	4.44%	823.1	4.13%
ATHB6(Homeobox)/Arabidopsis-HB6-ChIP-Seq(GSE80564)/Homer	CAATNATTBN	1e-1	-2.700e+00	0.3280	1184.0	5.92%	1109.9	5.57%
DAG2(C2C2dof)/col-DAG2-DAP-Seq(GSE60143)/Homer	WWTTHACTTTTT	1e-1	-2.690e+00	0.3294	2947.0	14.74%	2830.9	14.21%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e-1	-2.682e+00	0.3304	185.0	0.92%	156.8	0.79%
bHLH80(bHLH)/col-bHLH80-DAP-Seq(GSE60143)/Homer	NNNNDCAASTTGHNN	1e-1	-2.649e+00	0.3396	1066.0	5.33%	996.7	5.00%
ERF104(AP2EREBP)/col-ERF104-DAP-Seq(GSE60143)/Homer	GGCGGCGG	1e-1	-2.634e+00	0.3430	2072.0	10.36%	1975.6	9.92%
MYB83(MYB)/colamp-MYB83-DAP-Seq(GSE60143)/Homer	CACCAACCWH	1e-1	-2.608e+00	0.3502	2290.0	11.45%	2189.4	10.99%
ERF8(AP2EREBP)/colamp-ERF8-DAP-Seq(GSE60143)/Homer	CGCCGYCATW	1e-1	-2.593e+00	0.3536	1828.0	9.14%	1738.0	8.72%
AT1G69570(C2C2dof)/col-AT1G69570-DAP-Seq(GSE60143)/Homer	WAAAAGTGHH	1e-1	-2.567e+00	0.3612	1903.0	9.52%	1813.0	9.10%
ZML2(C2C2gata)/col-ZML2-DAP-Seq(GSE60143)/Homer	CATCATCATC	1e-1	-2.561e+00	0.3613	273.0	1.36%	239.3	1.20%
JKD(C2H2)/col-JKD-DAP-Seq(GSE60143)/Homer	TTTTGTCGTTTT	1e-1	-2.522e+00	0.3740	249.0	1.24%	217.2	1.09%
ERF3(AP2EREBP)/colamp-ERF3-DAP-Seq(GSE60143)/Homer	ATGGCGGCGG	1e-1	-2.516e+00	0.3741	1372.0	6.86%	1296.7	6.51%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e-1	-2.486e+00	0.3839	849.0	4.25%	790.8	3.97%
HAT1(Homeobox)/col-HAT1-DAP-Seq(GSE60143)/Homer	SCAATCATTGNN	1e-1	-2.483e+00	0.3839	288.0	1.44%	254.6	1.28%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e-1	-2.483e+00	0.3839	1405.0	7.03%	1329.3	6.67%
AT1G10720(BSD)/col-AT1G10720-DAP-Seq(GSE60143)/Homer	TTCTAGAAKCTTCTA	1e-1	-2.478e+00	0.3839	26.0	0.13%	16.9	0.08%
DREF/Drosophila-Promoters/Homer	AVYTATCGATAD	1e-1	-2.468e+00	0.3839	13.0	0.07%	6.3	0.03%
Rap210(AP2EREBP)/col-Rap210-DAP-Seq(GSE60143)/Homer	TGTCGGCA	1e-1	-2.414e+00	0.4023	548.0	2.74%	502.5	2.52%
AT1G20910(ARID)/col-AT1G20910-DAP-Seq(GSE60143)/Homer	THAATTRAWN	1e-1	-2.383e+00	0.4131	1760.0	8.80%	1678.5	8.42%
CCA(Myb)/Arabidopsis-CCA.GFP-ChIP-Seq(GSE70533)/Homer	AGATATYTTT	1e-1	-2.374e+00	0.4147	1016.0	5.08%	954.2	4.79%
VND3(NAC)/colamp-VND3-DAP-Seq(GSE60143)/Homer	TRCTTGWDNHWCAAG	1e-1	-2.360e+00	0.4186	699.0	3.50%	648.7	3.26%
AT2G20110(CPP)/colamp-AT2G20110-DAP-Seq(GSE60143)/Homer	ATTYAAATHY	1e-1	-2.353e+00	0.4196	2077.0	10.38%	1989.8	9.99%
TINY(AP2EREBP)/col-TINY-DAP-Seq(GSE60143)/Homer	NNCACCGACA	1e-1	-2.347e+00	0.4202	233.0	1.17%	204.2	1.02%
ABR1(AP2EREBP)/colamp-ABR1-DAP-Seq(GSE60143)/Homer	AAATGGCGGCGG	1e-1	-2.342e+00	0.4202	1643.0	8.21%	1565.7	7.86%
AT4G37180(G2like)/col-AT4G37180-DAP-Seq(GSE60143)/Homer	AGAATCTTNN	1e-1	-2.312e+00	0.4307	1355.0	6.78%	1285.9	6.45%
SUT1?/SacCer-Promoters/Homer	CCCCGCGC	1e0	-2.299e+00	0.4344	10863.0	54.32%	10693.1	53.67%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-2.289e+00	0.4368	553.0	2.77%	509.7	2.56%
ERF1(AP2EREBP)/colamp-ERF1-DAP-Seq(GSE60143)/Homer	GGCGGCTR	1e0	-2.276e+00	0.4404	1435.0	7.17%	1364.4	6.85%
SHN3(AP2EREBP)/col-SHN3-DAP-Seq(GSE60143)/Homer	CCGCCGCC	1e0	-2.269e+00	0.4413	967.0	4.83%	909.9	4.57%
ATHB18(Homeobox)/colamp-ATHB18-DAP-Seq(GSE60143)/Homer	YCAATSATTG	1e0	-2.264e+00	0.4418	302.0	1.51%	270.3	1.36%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	-2.251e+00	0.4453	2869.0	14.34%	2770.7	13.91%
IDD4(C2H2)/col-IDD4-DAP-Seq(GSE60143)/Homer	TTTGTCTTTWTB	1e0	-2.250e+00	0.4453	1385.0	6.93%	1316.8	6.61%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-2.239e+00	0.4466	893.0	4.46%	838.9	4.21%
MYB56(MYB)/colamp-MYB56-DAP-Seq(GSE60143)/Homer	HTAACGRMHY	1e0	-2.238e+00	0.4466	1026.0	5.13%	967.8	4.86%
ATAF1(NAC)/col-ATAF1-DAP-Seq(GSE60143)/Homer	YACGTMAY	1e0	-2.235e+00	0.4466	3702.0	18.51%	3591.9	18.03%
DREB2(AP2EREBP)/col-DREB2-DAP-Seq(GSE60143)/Homer	TMACCGACATWA	1e0	-2.233e+00	0.4466	412.0	2.06%	375.9	1.89%
AT1G72740(MYBrelated)/colamp-AT1G72740-DAP-Seq(GSE60143)/Homer	NNWWAMCCTAAHWNN	1e0	-2.220e+00	0.4469	1339.0	6.69%	1272.9	6.39%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-2.206e+00	0.4513	138.0	0.69%	117.1	0.59%
SRS7(SRS)/colamp-SRS7-DAP-Seq(GSE60143)/Homer	HATAGGTTTH	1e0	-2.176e+00	0.4629	4372.0	21.86%	4255.3	21.36%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-2.161e+00	0.4680	855.0	4.28%	803.2	4.03%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-2.161e+00	0.4680	64.0	0.32%	50.8	0.25%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-2.161e+00	0.4680	511.0	2.56%	471.3	2.37%
LHY(Myb)/Seedling-LHY-ChIP-Seq(GSE52175)/Homer	ADAAATATCT	1e0	-2.128e+00	0.4771	1244.0	6.22%	1183.0	5.94%
ERF7(AP2EREBP)/col-ERF7-DAP-Seq(GSE60143)/Homer	ATGRCGGCGG	1e0	-2.120e+00	0.4789	2241.0	11.21%	2158.7	10.83%
AT1G49560(G2like)/colamp-AT1G49560-DAP-Seq(GSE60143)/Homer	GAWTCTNWDA	1e0	-2.101e+00	0.4863	1487.0	7.43%	1420.4	7.13%
bHLH157(bHLH)/col-bHLH157-DAP-Seq(GSE60143)/Homer	KACACGTCTCTY	1e0	-2.083e+00	0.4930	272.0	1.36%	244.4	1.23%
VIP1(bZIP)/col-VIP1-DAP-Seq(GSE60143)/Homer	NTTGACAGCTGTCAN	1e0	-2.003e+00	0.5318	235.0	1.18%	210.8	1.06%
TCX2(CPP)/colamp-TCX2-DAP-Seq(GSE60143)/Homer	NNWWTTYRAAHN	1e0	-1.965e+00	0.5498	2236.0	11.18%	2160.0	10.84%
FRS9(ND)/col-FRS9-DAP-Seq(GSE60143)/Homer	RGAGAGAGAAAG	1e0	-1.961e+00	0.5499	424.0	2.12%	391.7	1.97%
BAM8(BES1)/col-BAM8-DAP-Seq(GSE60143)/Homer	NNWSACACGTGTSWN	1e0	-1.927e+00	0.5666	180.0	0.90%	159.4	0.80%
LEP(AP2EREBP)/col-LEP-DAP-Seq(GSE60143)/Homer	CDCCGCCGTC	1e0	-1.921e+00	0.5676	677.0	3.38%	636.3	3.19%
HAT2(Homeobox)/colamp-HAT2-DAP-Seq(GSE60143)/Homer	CYAATSATTR	1e0	-1.919e+00	0.5676	1384.0	6.92%	1325.2	6.65%
AGL25(MADS)/colamp-AGL25-DAP-Seq(GSE60143)/Homer	TTTCCATWTWTGGAA	1e0	-1.910e+00	0.5688	70.0	0.35%	57.4	0.29%
TOD6?/SacCer-Promoters/Homer	GCGATGAGMT	1e0	-1.896e+00	0.5743	186.0	0.93%	165.2	0.83%
TGA2(bZIP)/colamp-TGA2-DAP-Seq(GSE60143)/Homer	ACGTCAYCHH	1e0	-1.887e+00	0.5775	1118.0	5.59%	1066.6	5.35%
ANAC062(NAC)/colamp-ANAC062-DAP-Seq(GSE60143)/Homer	TACTTANTNWNYAAG	1e0	-1.883e+00	0.5775	434.0	2.17%	402.4	2.02%
BBX31(Orphan)/col-BBX31-DAP-Seq(GSE60143)/Homer	NAAAAAGTDA	1e0	-1.858e+00	0.5895	2706.0	13.53%	2626.9	13.19%
ANAC047(NAC)/colamp-ANAC047-DAP-Seq(GSE60143)/Homer	WACACGTAACTT	1e0	-1.842e+00	0.5964	774.0	3.87%	732.6	3.68%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e0	-1.826e+00	0.6039	1433.0	7.17%	1376.7	6.91%
ERF11(AP2EREBP)/col-ERF11-DAP-Seq(GSE60143)/Homer	RTGGCGGCGG	1e0	-1.821e+00	0.6040	1645.0	8.22%	1584.3	7.95%
AT5G66940(C2C2dof)/col-AT5G66940-DAP-Seq(GSE60143)/Homer	NNHACTTTWT	1e0	-1.821e+00	0.6040	3505.0	17.52%	3416.3	17.15%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-1.821e+00	0.6040	384.0	1.92%	355.7	1.79%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-1.814e+00	0.6040	658.0	3.29%	620.9	3.12%
AT2G33550(Trihelix)/colamp-AT2G33550-DAP-Seq(GSE60143)/Homer	TTTAAGGGCAYTTTT	1e0	-1.805e+00	0.6041	3020.0	15.10%	2938.2	14.75%
HSFB4(HSF)/col-HSFB4-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e0	-1.803e+00	0.6041	22.0	0.11%	15.3	0.08%
ERF2(AP2EREBP)/colamp-ERF2-DAP-Seq(GSE60143)/Homer	GGCGGCTG	1e0	-1.799e+00	0.6041	1581.0	7.90%	1522.2	7.64%
DREB19(AP2EREBP)/colamp-DREB19-DAP-Seq(GSE60143)/Homer	AATGTCGGTK	1e0	-1.784e+00	0.6097	647.0	3.23%	610.9	3.07%
ANAC011(NAC)/col-ANAC011-DAP-Seq(GSE60143)/Homer	TDCTTGYRNNDCAAG	1e0	-1.781e+00	0.6097	350.0	1.75%	323.6	1.62%
NTM1(NAC)/col-NTM1-DAP-Seq(GSE60143)/Homer	ACTTRTARAASAAGT	1e0	-1.778e+00	0.6097	585.0	2.93%	550.7	2.76%
OBP3(C2C2dof)/col-OBP3-DAP-Seq(GSE60143)/Homer	NYWACTTTTT	1e0	-1.776e+00	0.6097	5480.0	27.40%	5373.3	26.97%
CRF10(AP2EREBP)/col100-CRF10-DAP-Seq(GSE60143)/Homer	DCCGCCGYHA	1e0	-1.775e+00	0.6097	2343.0	11.71%	2272.9	11.41%
Cbf1(bHLH)/Yeast-Cbf1-ChIP-Seq(GSE29506)/Homer	TCACGTGAYH	1e0	-1.764e+00	0.6099	772.0	3.86%	732.5	3.68%
SPL14(SBP)/col-SPL14-DAP-Seq(GSE60143)/Homer	NNWHTGTACGGAHNH	1e0	-1.755e+00	0.6130	112.0	0.56%	97.3	0.49%
SND3(NAC)/col-SND3-DAP-Seq(GSE60143)/Homer	CTTNHNNNDNAAGNH	1e0	-1.741e+00	0.6192	756.0	3.78%	717.6	3.60%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-1.737e+00	0.6194	455.0	2.27%	425.0	2.13%
At1g77640(AP2EREBP)/col-At1g77640-DAP-Seq(GSE60143)/Homer	TGTCGGTGGA	1e0	-1.734e+00	0.6194	185.0	0.92%	166.1	0.83%
At4g31060(AP2EREBP)/colamp-At4g31060-DAP-Seq(GSE60143)/Homer	CACCGACAAW	1e0	-1.716e+00	0.6278	353.0	1.76%	327.9	1.65%
dof42(C2C2dof)/col-dof42-DAP-Seq(GSE60143)/Homer	AAAAAGGC	1e0	-1.715e+00	0.6278	946.0	4.73%	903.5	4.53%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e0	-1.715e+00	0.6278	75.0	0.38%	63.7	0.32%
ERF13(AP2EREBP)/colamp-ERF13-DAP-Seq(GSE60143)/Homer	TYAGCCGCCATT	1e0	-1.706e+00	0.6278	1891.0	9.46%	1830.6	9.19%
HSF6(HSF)/col-HSF6-DAP-Seq(GSE60143)/Homer	TTYTAGAAGCTTCTA	1e0	-1.695e+00	0.6317	285.0	1.43%	262.8	1.32%
RVE1(MYBrelated)/col-RVE1-DAP-Seq(GSE60143)/Homer	AAATATCT	1e0	-1.690e+00	0.6322	691.0	3.45%	655.9	3.29%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-1.684e+00	0.6336	897.0	4.49%	857.0	4.30%
SPL5(SBP)/colamp-SPL5-DAP-Seq(GSE60143)/Homer	NNHGTACGGHNN	1e0	-1.673e+00	0.6386	269.0	1.34%	248.0	1.24%
At5g04390(C2H2)/col200-At5g04390-DAP-Seq(GSE60143)/Homer	AGTGANDN	1e0	-1.641e+00	0.6568	9592.0	47.96%	9468.3	47.52%
ANAC096(NAC)/colamp-ANAC096-DAP-Seq(GSE60143)/Homer	TACTTGWNNNWCAAG	1e0	-1.633e+00	0.6598	669.0	3.35%	635.7	3.19%
BZR1(BZR)/col-BZR1-DAP-Seq(GSE60143)/Homer	NNCRCACGTGCG	1e0	-1.625e+00	0.6625	71.0	0.36%	60.3	0.30%
bHLH122(bHLH)/col100-bHLH122-DAP-Seq(GSE60143)/Homer	NDDCAASTTGHHNWW	1e0	-1.621e+00	0.6632	889.0	4.45%	850.6	4.27%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-1.618e+00	0.6632	4020.0	20.10%	3936.6	19.76%
ATHB7(Homeobox)/col-ATHB7-DAP-Seq(GSE60143)/Homer	AATGATTG	1e0	-1.617e+00	0.6632	1128.0	5.64%	1084.7	5.44%
At4g38000(C2C2dof)/col-At4g38000-DAP-Seq(GSE60143)/Homer	WWWTWACTTTTT	1e0	-1.617e+00	0.6632	1996.0	9.98%	1937.2	9.72%
PABPC1(?)/MEL-PABC1-CLIP-Seq(GSE69755)/Homer	HAATAAAGNN	1e0	-1.612e+00	0.6632	2890.0	14.45%	2819.5	14.15%
At3g60580(C2H2)/col-At3g60580-DAP-Seq(GSE60143)/Homer	WTTYTACT	1e0	-1.594e+00	0.6691	9003.0	45.02%	8885.9	44.60%
HSFA6A(HSF)/col-HSFA6A-DAP-Seq(GSE60143)/Homer	RGAAGNTTCTAGAAN	1e0	-1.566e+00	0.6855	30.0	0.15%	23.2	0.12%
PTF1(TCP)/colamp-PTF1-DAP-Seq(GSE60143)/Homer	RDDGGGACCACA	1e0	-1.564e+00	0.6855	64.0	0.32%	54.0	0.27%
SPL15(SBP)/colamp-SPL15-DAP-Seq(GSE60143)/Homer	WDWMMGTACADW	1e0	-1.555e+00	0.6880	1462.0	7.31%	1414.8	7.10%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-1.549e+00	0.6895	353.0	1.76%	330.9	1.66%
AS2(LOBAS2)/col-AS2-DAP-Seq(GSE60143)/Homer	CCGDAAWWHMCGSCG	1e0	-1.544e+00	0.6911	173.0	0.86%	157.5	0.79%
NTM2(NAC)/col-NTM2-DAP-Seq(GSE60143)/Homer	CTTRTNNNAYAAGBH	1e0	-1.535e+00	0.6948	608.0	3.04%	578.5	2.90%
TGA4(bZIP)/colamp-TGA4-DAP-Seq(GSE60143)/Homer	RTGACGTCAKCW	1e0	-1.524e+00	0.7001	789.0	3.94%	755.9	3.79%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-1.511e+00	0.7068	515.0	2.57%	488.2	2.45%
AGL6(MADS)/col-AGL6-DAP-Seq(GSE60143)/Homer	TTWCCWWAWWDGGWA	1e0	-1.505e+00	0.7083	162.0	0.81%	147.4	0.74%
SeqBias: GCW-triplet	GCWGCWGCWGCW	1e0	-1.504e+00	0.7083	19960.0	99.80%	19875.3	99.76%
AT2G28810(C2C2dof)/colamp-AT2G28810-DAP-Seq(GSE60143)/Homer	VAAAAAGTWA	1e0	-1.502e+00	0.7083	4094.0	20.47%	4016.7	20.16%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-1.501e+00	0.7083	290.0	1.45%	270.4	1.36%
VND4(NAC)/colamp-VND4-DAP-Seq(GSE60143)/Homer	WRCTTGWANWWCAAG	1e0	-1.497e+00	0.7083	778.0	3.89%	745.2	3.74%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-1.491e+00	0.7083	389.0	1.94%	366.7	1.84%
RAP26(AP2EREBP)/colamp-RAP26-DAP-Seq(GSE60143)/Homer	HDATGGCGGCGG	1e0	-1.487e+00	0.7083	2112.0	10.56%	2057.8	10.33%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e0	-1.487e+00	0.7083	1317.0	6.59%	1274.6	6.40%
HDG1(Homeobox)/col100-HDG1-DAP-Seq(GSE60143)/Homer	DDYAATTAATGH	1e0	-1.476e+00	0.7092	627.0	3.14%	598.6	3.00%
SPL11(SBP)/col100-SPL11-DAP-Seq(GSE60143)/Homer	YTGTACTTBH	1e0	-1.473e+00	0.7092	763.0	3.82%	731.6	3.67%
HSF7(HSF)/colamp-HSF7-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e0	-1.471e+00	0.7092	221.0	1.10%	204.7	1.03%
CDF3(C2C2dof)/colamp-CDF3-DAP-Seq(GSE60143)/Homer	AAAAGTRM	1e0	-1.467e+00	0.7092	3015.0	15.07%	2950.2	14.81%
SOL1(CPP)/colamp-SOL1-DAP-Seq(GSE60143)/Homer	ATTTAAATHN	1e0	-1.466e+00	0.7092	2186.0	10.93%	2131.8	10.70%
OBP1(C2C2dof)/col-OBP1-DAP-Seq(GSE60143)/Homer	NHHACTTTWT	1e0	-1.465e+00	0.7092	4928.0	24.64%	4845.2	24.32%
WRKY21(WRKY)/colamp-WRKY21-DAP-Seq(GSE60143)/Homer	DCGTTGACTTTT	1e0	-1.459e+00	0.7092	153.0	0.77%	139.2	0.70%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e0	-1.457e+00	0.7092	486.0	2.43%	461.6	2.32%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-1.447e+00	0.7112	259.0	1.29%	241.9	1.21%
MYB96(MYB)/colamp-MYB96-DAP-Seq(GSE60143)/Homer	WGGTRGTTGG	1e0	-1.446e+00	0.7112	1228.0	6.14%	1188.1	5.96%
ANAC053(NAC)/colamp-ANAC053-DAP-Seq(GSE60143)/Homer	TDCTTGNNNNNCAAG	1e0	-1.443e+00	0.7112	579.0	2.90%	553.0	2.78%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-1.417e+00	0.7257	1001.0	5.00%	966.2	4.85%
DREB26(AP2EREBP)/col-DREB26-DAP-Seq(GSE60143)/Homer	CCACCGACAH	1e0	-1.407e+00	0.7305	311.0	1.55%	292.5	1.47%
CUC1(NAC)/col-CUC1-DAP-Seq(GSE60143)/Homer	TACTTGTNNNACAAG	1e0	-1.405e+00	0.7305	455.0	2.27%	432.1	2.17%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-1.405e+00	0.7305	195.0	0.97%	180.4	0.91%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-1.400e+00	0.7305	349.0	1.75%	329.2	1.65%
At2g44940(AP2EREBP)/colamp-At2g44940-DAP-Seq(GSE60143)/Homer	NYACCGACAHNNNNN	1e0	-1.378e+00	0.7426	154.0	0.77%	141.8	0.71%
TCP3(TCP)/colamp-TCP3-DAP-Seq(GSE60143)/Homer	WGTGGTCCCAAHWWW	1e0	-1.357e+00	0.7560	161.0	0.80%	148.6	0.75%
bHLH10(bHLH)/colamp-bHLH10-DAP-Seq(GSE60143)/Homer	YACCGACA	1e0	-1.345e+00	0.7625	251.0	1.26%	235.5	1.18%
AT5G45580(G2like)/colamp-AT5G45580-DAP-Seq(GSE60143)/Homer	ADRGAATCTH	1e0	-1.327e+00	0.7743	1758.0	8.79%	1715.8	8.61%
ATHB5(HB)/colamp-ATHB5-DAP-Seq(GSE60143)/Homer	AATGATTG	1e0	-1.322e+00	0.7753	1405.0	7.03%	1367.3	6.86%
OBP4(C2C2dof)/col-OBP4-DAP-Seq(GSE60143)/Homer	WTTHACTTTTTB	1e0	-1.318e+00	0.7763	2561.0	12.80%	2509.4	12.60%
LIN-39(Homeobox)/cElegans.L3-LIN39-ChIP-Seq(modEncode)/Homer	ATGATTRATG	1e0	-1.316e+00	0.7763	1795.0	8.97%	1752.5	8.80%
At3g04030(G2like)/col-At3g04030-DAP-Seq(GSE60143)/Homer	DRGAATCT	1e0	-1.313e+00	0.7763	1034.0	5.17%	1002.4	5.03%
Adof1(C2C2dof)/col-Adof1-DAP-Seq(GSE60143)/Homer	NRWAAAGYDV	1e0	-1.312e+00	0.7763	4833.0	24.16%	4761.5	23.90%
At1g36060(AP2EREBP)/colamp-At1g36060-DAP-Seq(GSE60143)/Homer	NNWWKGTCGGTG	1e0	-1.299e+00	0.7808	826.0	4.13%	798.0	4.01%
ERF115(AP2EREBP)/colamp-ERF115-DAP-Seq(GSE60143)/Homer	WTKRCGGCGB	1e0	-1.299e+00	0.7808	2657.0	13.29%	2605.3	13.08%
bZIP44(bZIP)/colamp-bZIP44-DAP-Seq(GSE60143)/Homer	NDTGCCACGTCAGCH	1e0	-1.297e+00	0.7808	67.0	0.34%	59.3	0.30%
MYB98(MYB)/col-MYB98-DAP-Seq(GSE60143)/Homer	NWDCCGTTAC	1e0	-1.294e+00	0.7808	437.0	2.19%	417.0	2.09%
AT4G27900(C2C2COlike)/col-AT4G27900-DAP-Seq(GSE60143)/Homer	TCTCVACCGTTSATT	1e0	-1.285e+00	0.7822	7.0	0.03%	4.2	0.02%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e0	-1.285e+00	0.7822	161.0	0.80%	149.3	0.75%
MYB93(MYB)/colamp-MYB93-DAP-Seq(GSE60143)/Homer	GGTAGGTGRD	1e0	-1.279e+00	0.7827	1464.0	7.32%	1427.1	7.16%
HY5(bZIP)/colamp-HY5-DAP-Seq(GSE60143)/Homer	RRTSACGTSD	1e0	-1.262e+00	0.7936	1519.0	7.60%	1482.8	7.44%
BPC6(BBRBPC)/col-BPC6-DAP-Seq(GSE60143)/Homer	YTYTCTCTCTCTCTA	1e0	-1.260e+00	0.7936	55.0	0.27%	48.5	0.24%
AT1G12630(AP2EREBP)/colamp-AT1G12630-DAP-Seq(GSE60143)/Homer	TGTCGGCA	1e0	-1.254e+00	0.7946	480.0	2.40%	460.8	2.31%
CAMTA1(CAMTA)/col-CAMTA1-DAP-Seq(GSE60143)/Homer	WWAACGCGTT	1e0	-1.250e+00	0.7955	583.0	2.92%	562.0	2.82%
MYB41(MYB)/col-MYB41-DAP-Seq(GSE60143)/Homer	BYTYACCTAA	1e0	-1.243e+00	0.7990	447.0	2.23%	428.3	2.15%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-1.235e+00	0.8025	893.0	4.46%	866.4	4.35%
bHLH130(bHLH)/col-bHLH130-DAP-Seq(GSE60143)/Homer	GCAACTTG	1e0	-1.225e+00	0.8082	791.0	3.96%	766.4	3.85%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	-1.224e+00	0.8082	43.0	0.21%	37.4	0.19%
M1BP(Zf)/S2R+-M1BP-ChIP-Seq(GSE49842)/Homer	CAGTGTGACCGT	1e0	-1.222e+00	0.8082	337.0	1.69%	321.6	1.61%
GATA12(C2C2gata)/col-GATA12-DAP-Seq(GSE60143)/Homer	YAGATCTRAW	1e0	-1.217e+00	0.8082	634.0	3.17%	612.9	3.08%
ANAC028(NAC)/col-ANAC028-DAP-Seq(GSE60143)/Homer	WRCTTGNNNNNCAAG	1e0	-1.215e+00	0.8082	751.0	3.75%	727.5	3.65%
PUCHI(AP2EREBP)/colamp-PUCHI-DAP-Seq(GSE60143)/Homer	GCGCCGTY	1e0	-1.206e+00	0.8118	1641.0	8.21%	1605.5	8.06%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-1.205e+00	0.8118	1402.0	7.01%	1369.2	6.87%
KAN2(G2like)/colamp-KAN2-DAP-Seq(GSE60143)/Homer	ATATTCTY	1e0	-1.204e+00	0.8118	1913.0	9.56%	1874.2	9.41%
dof24(C2C2dof)/col-dof24-DAP-Seq(GSE60143)/Homer	TWMCTTTTTG	1e0	-1.203e+00	0.8118	3376.0	16.88%	3323.3	16.68%
ANAC020(NAC)/col-ANAC020-DAP-Seq(GSE60143)/Homer	DVCKTGHNNNDCAAG	1e0	-1.189e+00	0.8158	623.0	3.12%	602.2	3.02%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e0	-1.187e+00	0.8158	1808.0	9.04%	1771.4	8.89%
ERF73(AP2EREBP)/col-ERF73-DAP-Seq(GSE60143)/Homer	CCGCCGCC	1e0	-1.179e+00	0.8196	1494.0	7.47%	1461.2	7.33%
CUC2(NAC)/colamp-CUC2-DAP-Seq(GSE60143)/Homer	TRCKTGTNNNWCAMG	1e0	-1.172e+00	0.8232	341.0	1.70%	326.5	1.64%
LIN-15B(Zf)/cElegans-L3-LIN15B-ChIP-Seq(modEncode)/Homer	CARTGGAGCGCRYTTGCATT	1e0	-1.159e+00	0.8318	3.0	0.01%	1.5	0.01%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-1.151e+00	0.8358	129.0	0.65%	120.0	0.60%
AT3G12130(C3H)/colamp-AT3G12130-DAP-Seq(GSE60143)/Homer	TMACTTTTTV	1e0	-1.141e+00	0.8419	4174.0	20.87%	4119.6	20.68%
At1g74840(MYBrelated)/col100-At1g74840-DAP-Seq(GSE60143)/Homer	YHTTATCCAWWT	1e0	-1.135e+00	0.8440	1082.0	5.41%	1057.0	5.31%
AT3G10113(MYBrelated)/col-AT3G10113-DAP-Seq(GSE60143)/Homer	WNAAATATCWWN	1e0	-1.128e+00	0.8478	554.0	2.77%	536.8	2.69%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-1.120e+00	0.8524	143.0	0.71%	134.9	0.68%
TGA9(bZIP)/colamp-TGA9-DAP-Seq(GSE60143)/Homer	VTGACGTC	1e0	-1.118e+00	0.8524	2056.0	10.28%	2020.4	10.14%
At5g22890(C2H2)/col-At5g22890-DAP-Seq(GSE60143)/Homer	NSAGGTKWTATCTGD	1e0	-1.114e+00	0.8524	40.0	0.20%	35.6	0.18%
At1g68670(G2like)/colamp-At1g68670-DAP-Seq(GSE60143)/Homer	WNWWHNRAAGATTCT	1e0	-1.114e+00	0.8524	519.0	2.60%	502.1	2.52%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-1.112e+00	0.8524	264.0	1.32%	252.6	1.27%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-1.108e+00	0.8524	529.0	2.65%	512.0	2.57%
GBF6(bZIP)/colamp-GBF6-DAP-Seq(GSE60143)/Homer	WWTGMCACGTCABCW	1e0	-1.107e+00	0.8524	365.0	1.82%	351.3	1.76%
ABI5(bZIP)/col-ABI5-DAP-Seq(GSE60143)/Homer	GCCACGTG	1e0	-1.095e+00	0.8565	615.0	3.08%	597.6	3.00%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	-1.095e+00	0.8565	43.0	0.21%	38.9	0.20%
BIM1(bHLH)/colamp-BIM1-DAP-Seq(GSE60143)/Homer	NNNNNNVTCACGTGM	1e0	-1.072e+00	0.8716	304.0	1.52%	292.0	1.47%
Knotted(Homeobox)/Corn-KN1-ChIP-Seq(GSE39161)/Homer	GAYGNGACRGGN	1e0	-1.066e+00	0.8747	2155.0	10.78%	2121.7	10.65%
ANAC087(NAC)/col-ANAC087-DAP-Seq(GSE60143)/Homer	WVCKTGHNNNWCAMG	1e0	-1.064e+00	0.8747	314.0	1.57%	302.5	1.52%
At2g41835(C2H2)/col-At2g41835-DAP-Seq(GSE60143)/Homer	TTTGAAAA	1e0	-1.052e+00	0.8825	790.0	3.95%	771.4	3.87%
WRKY22(WRKY)/colamp-WRKY22-DAP-Seq(GSE60143)/Homer	WWAAAGTCAACK	1e0	-1.030e+00	0.8996	774.0	3.87%	756.7	3.80%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	-1.023e+00	0.9036	34.0	0.17%	30.3	0.15%
At1g64620(C2C2dof)/colamp-At1g64620-DAP-Seq(GSE60143)/Homer	CACTTTTT	1e0	-1.021e+00	0.9036	2353.0	11.77%	2320.8	11.65%
HAP3(CCAATHAP3)/col-HAP3-DAP-Seq(GSE60143)/Homer	TGATGGAW	1e0	-1.016e+00	0.9045	320.0	1.60%	309.6	1.55%
LBD13(LOBAS2)/colamp-LBD13-DAP-Seq(GSE60143)/Homer	KCCGTNWTTTBCGGC	1e0	-1.015e+00	0.9045	1480.0	7.40%	1455.2	7.30%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-1.011e+00	0.9045	387.0	1.93%	375.1	1.88%
AT5G63260(C3H)/col-AT5G63260-DAP-Seq(GSE60143)/Homer	RAAAAAGTRA	1e0	-1.010e+00	0.9045	4148.0	20.74%	4103.8	20.60%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-1.007e+00	0.9045	395.0	1.98%	383.9	1.93%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-1.004e+00	0.9045	610.0	3.05%	595.2	2.99%
AZF1(C2H2)/colamp-AZF1-DAP-Seq(GSE60143)/Homer	DKSWCACT	1e0	-9.981e-01	0.9062	9014.0	45.07%	8945.7	44.90%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-9.971e-01	0.9062	552.0	2.76%	539.0	2.71%
ATHB13(Homeobox)/col-ATHB13-DAP-Seq(GSE60143)/Homer	CAATAATT	1e0	-9.897e-01	0.9090	1620.0	8.10%	1595.2	8.01%
AT3G58630(Trihelix)/col-AT3G58630-DAP-Seq(GSE60143)/Homer	TCTCCGGCGA	1e0	-9.858e-01	0.9102	246.0	1.23%	238.0	1.19%
SGR5(C2H2)/colamp-SGR5-DAP-Seq(GSE60143)/Homer	TTTGTCTTTTTT	1e0	-9.804e-01	0.9126	940.0	4.70%	922.5	4.63%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-9.786e-01	0.9126	1246.0	6.23%	1225.9	6.15%
AT1G04880(ARID)/colamp-AT1G04880-DAP-Seq(GSE60143)/Homer	AAACTATATADTATA	1e0	-9.781e-01	0.9126	152.0	0.76%	145.1	0.73%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-9.579e-01	0.9261	1828.0	9.14%	1803.6	9.05%
AT3G60490(AP2EREBP)/colamp-AT3G60490-DAP-Seq(GSE60143)/Homer	NNRCCGACANNNNNN	1e0	-9.512e-01	0.9299	231.0	1.16%	223.8	1.12%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e0	-9.481e-01	0.9303	439.0	2.20%	428.4	2.15%
REB1/SacCer-Promoters/Homer	KCCGGGTAAYRR	1e0	-9.475e-01	0.9303	179.0	0.90%	172.9	0.87%
bHLH18(bHLH)/col-bHLH18-DAP-Seq(GSE60143)/Homer	CACGTGTTYCACGTG	1e0	-9.462e-01	0.9303	51.0	0.26%	47.7	0.24%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-9.393e-01	0.9313	6322.0	31.61%	6271.2	31.48%
ATHB6(Homeobox)/col-ATHB6-DAP-Seq(GSE60143)/Homer	AATGATTG	1e0	-9.342e-01	0.9336	1877.0	9.38%	1853.6	9.30%
CUC3(NAC)/col-CUC3-DAP-Seq(GSE60143)/Homer	TRCKTGWNNNACAMG	1e0	-9.258e-01	0.9391	336.0	1.68%	327.4	1.64%
At4g01280(MYBrelated)/colamp-At4g01280-DAP-Seq(GSE60143)/Homer	AAATATCT	1e0	-9.224e-01	0.9398	683.0	3.42%	670.8	3.37%
MYB105(MYB)/colamp-MYB105-DAP-Seq(GSE60143)/Homer	RATWCCGTTA	1e0	-9.098e-01	0.9494	730.0	3.65%	717.6	3.60%
CDM1(C3H)/colamp-CDM1-DAP-Seq(GSE60143)/Homer	CCGAWAWTWTCGGAN	1e0	-9.006e-01	0.9557	69.0	0.34%	65.6	0.33%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-8.993e-01	0.9557	1230.0	6.15%	1213.7	6.09%
DDF1(AP2EREBP)/col-DDF1-DAP-Seq(GSE60143)/Homer	GCCGACAT	1e0	-8.951e-01	0.9561	403.0	2.02%	394.7	1.98%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-8.916e-01	0.9571	252.0	1.26%	245.2	1.23%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	-8.905e-01	0.9571	10.0	0.05%	8.3	0.04%
AT2G15740(C2H2)/col-AT2G15740-DAP-Seq(GSE60143)/Homer	DHNDWATCGATD	1e0	-8.904e-01	0.9571	704.0	3.52%	692.7	3.48%
AT5G23930(mTERF)/col-AT5G23930-DAP-Seq(GSE60143)/Homer	GGCGGCTG	1e0	-8.887e-01	0.9571	2915.0	14.57%	2887.8	14.49%
MYB118(MYB)/colamp-MYB118-DAP-Seq(GSE60143)/Homer	TAWCCGTTAC	1e0	-8.855e-01	0.9571	428.0	2.14%	419.1	2.10%
ANAC016(NAC)/col-ANAC016-DAP-Seq(GSE60143)/Homer	WNCTTGNNNNNCAMG	1e0	-8.845e-01	0.9571	839.0	4.20%	826.4	4.15%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-8.810e-01	0.9571	80.0	0.40%	76.2	0.38%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e0	-8.796e-01	0.9571	2070.0	10.35%	2048.4	10.28%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-8.678e-01	0.9606	1310.0	6.55%	1294.8	6.50%
AGL95(ND)/col-AGL95-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e0	-8.602e-01	0.9656	95.0	0.47%	91.6	0.46%
At2g33710(AP2EREBP)/colamp-At2g33710-DAP-Seq(GSE60143)/Homer	WTKGCGGCKR	1e0	-8.568e-01	0.9665	2985.0	14.92%	2959.4	14.85%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-8.543e-01	0.9665	242.0	1.21%	236.3	1.19%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-8.486e-01	0.9696	3461.0	17.30%	3433.9	17.24%
ANAC050(NAC)/colamp-ANAC050-DAP-Seq(GSE60143)/Homer	WNCTTGNNNNNCAAG	1e0	-8.403e-01	0.9753	582.0	2.91%	574.0	2.88%
MYB88(MYB)/col-MYB88-DAP-Seq(GSE60143)/Homer	HNACGCTCCT	1e0	-8.385e-01	0.9753	3243.0	16.21%	3217.1	16.15%
TCP20(TCP)/col-TCP20-DAP-Seq(GSE60143)/Homer	GGDCCCAC	1e0	-8.216e-01	0.9889	544.0	2.72%	536.9	2.69%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-8.184e-01	0.9896	328.0	1.64%	322.8	1.62%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	-8.125e-01	0.9930	22.0	0.11%	20.1	0.10%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-8.106e-01	0.9930	595.0	2.97%	587.3	2.95%
MYB33(MYB)/col-MYB33-DAP-Seq(GSE60143)/Homer	DDTYNGTTAN	1e0	-8.086e-01	0.9930	2752.0	13.76%	2731.0	13.71%
SPL1(SBP)/colamp-SPL1-DAP-Seq(GSE60143)/Homer	HYGTACDTWH	1e0	-8.003e-01	0.9979	2121.0	10.61%	2104.3	10.56%
NST1(NAC)/colamp-NST1-DAP-Seq(GSE60143)/Homer	WRCTTRWWNWWYAAG	1e0	-7.995e-01	0.9979	946.0	4.73%	936.5	4.70%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-7.977e-01	0.9979	2154.0	10.77%	2137.8	10.73%
SMB(NAC)/colamp-SMB-DAP-Seq(GSE60143)/Homer	CTTVNNNNDBAAGHW	1e0	-7.961e-01	0.9979	971.0	4.86%	962.0	4.83%
AGL15(MADS)/col-AGL15-DAP-Seq(GSE60143)/Homer	TTTCCHWATWDGGAA	1e0	-7.903e-01	0.9984	193.0	0.97%	189.6	0.95%
EPR1(MYBrelated)/colamp-EPR1-DAP-Seq(GSE60143)/Homer	AAATATCT	1e0	-7.792e-01	1.0000	480.0	2.40%	474.1	2.38%
LHY1(MYBrelated)/col-LHY1-DAP-Seq(GSE60143)/Homer	AAATATCT	1e0	-7.792e-01	1.0000	480.0	2.40%	474.1	2.38%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-7.714e-01	1.0000	1550.0	7.75%	1538.9	7.72%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-7.711e-01	1.0000	245.0	1.23%	241.4	1.21%
RAV1(RAV)/colamp-RAV1-DAP-Seq(GSE60143)/Homer	TWWTTTCTGTTG	1e0	-7.654e-01	1.0000	1063.0	5.32%	1054.5	5.29%
bHLH28(bHLH)/col-bHLH28-DAP-Seq(GSE60143)/Homer	NHHTGTACGGAH	1e0	-7.652e-01	1.0000	142.0	0.71%	139.5	0.70%
IDD2(C2H2)/colamp-IDD2-DAP-Seq(GSE60143)/Homer	HAVAAAAMGACAAAA	1e0	-7.587e-01	1.0000	157.0	0.78%	154.8	0.78%
HSFA1E(HSF)/col-HSFA1E-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e0	-7.540e-01	1.0000	57.0	0.29%	55.1	0.28%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-7.491e-01	1.0000	2047.0	10.23%	2034.9	10.21%
HSFC1(HSF)/col-HSFC1-DAP-Seq(GSE60143)/Homer	HTTCTAGAADCTTCT	1e0	-7.490e-01	1.0000	184.0	0.92%	181.8	0.91%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-7.474e-01	1.0000	1653.0	8.27%	1642.8	8.25%
At3g12730(G2like)/colamp-At3g12730-DAP-Seq(GSE60143)/Homer	AAGATTCT	1e0	-7.468e-01	1.0000	1662.0	8.31%	1651.7	8.29%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e0	-7.460e-01	1.0000	1672.0	8.36%	1661.0	8.34%
ANAC058(NAC)/col-ANAC058-DAP-Seq(GSE60143)/Homer	TWCTTGTDNNACAAG	1e0	-7.404e-01	1.0000	550.0	2.75%	545.3	2.74%
MS188(MYB)/colamp-MS188-DAP-Seq(GSE60143)/Homer	WARKTAGGTRRA	1e0	-7.401e-01	1.0000	931.0	4.66%	924.3	4.64%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e0	-7.380e-01	1.0000	3584.0	17.92%	3565.8	17.90%
AT3G16280(AP2EREBP)/colamp-AT3G16280-DAP-Seq(GSE60143)/Homer	HCACCGACAHHDHHN	1e0	-7.357e-01	1.0000	231.0	1.16%	228.6	1.15%
ANAC092(NAC)/colamp-ANAC092-DAP-Seq(GSE60143)/Homer	WRCKTGWNNNWCAMG	1e0	-7.355e-01	1.0000	402.0	2.01%	398.8	2.00%
PHV(HB)/col-PHV-DAP-Seq(GSE60143)/Homer	RTAATSATTA	1e0	-7.351e-01	1.0000	589.0	2.94%	584.6	2.93%
CRC(C2C2YABBY)/col-CRC-DAP-Seq(GSE60143)/Homer	TWATSATA	1e0	-7.345e-01	1.0000	2059.0	10.29%	2047.7	10.28%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-7.327e-01	1.0000	805.0	4.03%	799.1	4.01%
NAC2(NAC)/colamp-NAC2-DAP-Seq(GSE60143)/Homer	TDCTTGNNNNNCAAG	1e0	-7.223e-01	1.0000	697.0	3.48%	692.7	3.48%
AGL63(MADS)/col-AGL63-DAP-Seq(GSE60143)/Homer	TTCCAAWWWTGG	1e0	-7.170e-01	1.0000	1196.0	5.98%	1189.2	5.97%
BIM3(bHLH)/col-BIM3-DAP-Seq(GSE60143)/Homer	TWVTCACGTGAB	1e0	-7.083e-01	1.0000	386.0	1.93%	383.2	1.92%
DEAR3(AP2EREBP)/colamp-DEAR3-DAP-Seq(GSE60143)/Homer	BCACCGACAWNNNNN	1e0	-7.021e-01	1.0000	202.0	1.01%	200.7	1.01%
O2(bZIP)/Corn-O2-ChIP-Seq(GSE63991)/Homer	GCTGACGTGGCA	1e0	-6.980e-01	1.0000	227.0	1.14%	225.7	1.13%
SeqBias: A/T bias	WWWWWWWWWW	1e0	-6.944e-01	1.0000	14510.0	72.55%	14453.3	72.54%
ZIM(C2C2gata)/col-ZIM-DAP-Seq(GSE60143)/Homer	ATCSRACGGTYRAGA	1e0	-6.903e-01	1.0000	2.0	0.01%	1.3	0.01%
E-box/Arabidopsis-Promoters/Homer	GCCACGTG	1e0	-6.879e-01	1.0000	849.0	4.25%	845.7	4.24%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-6.845e-01	1.0000	16.0	0.08%	15.5	0.08%
LMI1(HB)/colamp-LMI1-DAP-Seq(GSE60143)/Homer	AATTATTG	1e0	-6.811e-01	1.0000	946.0	4.73%	942.0	4.73%
AT1G44830(AP2EREBP)/col-AT1G44830-DAP-Seq(GSE60143)/Homer	NCCACCGACA	1e0	-6.803e-01	1.0000	374.0	1.87%	372.1	1.87%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-6.754e-01	1.0000	1037.0	5.18%	1033.7	5.19%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-6.722e-01	1.0000	94.0	0.47%	93.8	0.47%
Unknown3/Drosophila-Promoters/Homer	ACVAKCTGGCAGCGC	1e0	-6.718e-01	1.0000	98.0	0.49%	97.5	0.49%
AGL16(MADS)/col-AGL16-DAP-Seq(GSE60143)/Homer	TWCCHWATWDGGAAA	1e0	-6.712e-01	1.0000	104.0	0.52%	103.2	0.52%
ANAC071(NAC)/col-ANAC071-DAP-Seq(GSE60143)/Homer	DNCKTNDNNNHNAAG	1e0	-6.698e-01	1.0000	825.0	4.12%	822.9	4.13%
At5g52660(MYBrelated)/colamp-At5g52660-DAP-Seq(GSE60143)/Homer	HAAAAATATCTW	1e0	-6.655e-01	1.0000	560.0	2.80%	558.6	2.80%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	-6.578e-01	1.0000	1689.0	8.45%	1684.7	8.46%
E-box/Drosophila-Promoters/Homer	AACAGCTGTTHN	1e0	-6.567e-01	1.0000	287.0	1.44%	286.2	1.44%
Tal1	CATCTG	1e0	-6.496e-01	1.0000	1884.0	9.42%	1879.8	9.44%
GATA11(C2C2gata)/col-GATA11-DAP-Seq(GSE60143)/Homer	DDHYYAGATCTR	1e0	-6.467e-01	1.0000	466.0	2.33%	465.3	2.34%
At1g78700(BZR)/col-At1g78700-DAP-Seq(GSE60143)/Homer	NNNNCACGTGNNNNN	1e0	-6.243e-01	1.0000	339.0	1.70%	339.5	1.70%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-6.234e-01	1.0000	162.0	0.81%	162.9	0.82%
GATA1(C2C2gata)/colamp-GATA1-DAP-Seq(GSE60143)/Homer	DDWWYYAGATCTRRW	1e0	-6.232e-01	1.0000	403.0	2.02%	403.8	2.03%
ERF38(AP2EREBP)/col-ERF38-DAP-Seq(GSE60143)/Homer	CACCGACA	1e0	-6.228e-01	1.0000	425.0	2.12%	425.5	2.14%
At4g18890(BZR)/col-At4g18890-DAP-Seq(GSE60143)/Homer	NDBRCACGTGYR	1e0	-6.218e-01	1.0000	135.0	0.68%	135.3	0.68%
COG1(C2C2dof)/col-COG1-DAP-Seq(GSE60143)/Homer	DAAAAAGTGA	1e0	-6.185e-01	1.0000	2427.0	12.13%	2423.9	12.17%
MYB17(MYB)/colamp-MYB17-DAP-Seq(GSE60143)/Homer	GGTAGGTGRG	1e0	-6.164e-01	1.0000	686.0	3.43%	686.4	3.45%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-6.150e-01	1.0000	5171.0	25.86%	5159.8	25.90%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-6.119e-01	1.0000	73.0	0.36%	73.4	0.37%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-6.116e-01	1.0000	72.0	0.36%	73.0	0.37%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e0	-5.993e-01	1.0000	1348.0	6.74%	1348.7	6.77%
STOP1(C2H2)/colamp-STOP1-DAP-Seq(GSE60143)/Homer	DTATCTGGKGRAGGT	1e0	-5.977e-01	1.0000	529.0	2.65%	530.7	2.66%
AT2G28920(ND)/col-AT2G28920-DAP-Seq(GSE60143)/Homer	WAGATATTTWTW	1e0	-5.965e-01	1.0000	355.0	1.77%	356.5	1.79%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-5.957e-01	1.0000	327.0	1.64%	328.2	1.65%
MYB116(MYB)/colamp-MYB116-DAP-Seq(GSE60143)/Homer	AGTTAGGCAN	1e0	-5.951e-01	1.0000	786.0	3.93%	787.7	3.95%
RAP211(AP2EREBP)/colamp-RAP211-DAP-Seq(GSE60143)/Homer	RGCCGGCYWW	1e0	-5.885e-01	1.0000	3514.0	17.57%	3510.6	17.62%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-5.849e-01	1.0000	1353.0	6.77%	1354.2	6.80%
ATHB40(HB)/col-ATHB40-DAP-Seq(GSE60143)/Homer	HCAATWATTG	1e0	-5.748e-01	1.0000	1056.0	5.28%	1058.0	5.31%
ERF105(AP2EREBP)/colamp-ERF105-DAP-Seq(GSE60143)/Homer	TGGCGGCT	1e0	-5.714e-01	1.0000	2567.0	12.83%	2567.4	12.89%
ANAC083(NAC)/col-ANAC083-DAP-Seq(GSE60143)/Homer	CKTRWNNNWYAMGTA	1e0	-5.581e-01	1.0000	704.0	3.52%	707.3	3.55%
SeqBias: G/A bias	RRRRRRRRRR	1e0	-5.558e-01	1.0000	19987.0	99.94%	19910.2	99.93%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-5.545e-01	1.0000	2353.0	11.77%	2355.5	11.82%
FHY3(FAR1)/Arabidopsis-FHY3-ChIP-Seq(GSE30711)/Homer	HHCACGCGCBTN	1e0	-5.510e-01	1.0000	458.0	2.29%	461.8	2.32%
ANAC070(NAC)/colamp-ANAC070-DAP-Seq(GSE60143)/Homer	CTTRHDNHNBAAGHW	1e0	-5.441e-01	1.0000	1227.0	6.13%	1231.8	6.18%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e0	-5.439e-01	1.0000	1007.0	5.04%	1011.8	5.08%
SeqBias: CG bias	SSSSSSSSSS	1e0	-5.438e-01	1.0000	13063.0	65.31%	13031.3	65.41%
bZIP18(bZIP)/colamp-bZIP18-DAP-Seq(GSE60143)/Homer	KGMCAGCTND	1e0	-5.345e-01	1.0000	7828.0	39.14%	7818.6	39.24%
TGA6(bZIP)/colamp-TGA6-DAP-Seq(GSE60143)/Homer	TGACGTCABC	1e0	-5.304e-01	1.0000	1315.0	6.58%	1320.7	6.63%
FAR1(FAR1)/col-FAR1-DAP-Seq(GSE60143)/Homer	TKNNNYYCACGCGCY	1e0	-5.285e-01	1.0000	116.0	0.58%	118.6	0.60%
ATHB15(HB)/col-ATHB15-DAP-Seq(GSE60143)/Homer	GYAATSATTA	1e0	-5.278e-01	1.0000	447.0	2.23%	451.3	2.27%
At1g14580(C2H2)/colamp-At1g14580-DAP-Seq(GSE60143)/Homer	CASAAAAMGACAAAA	1e0	-5.273e-01	1.0000	232.0	1.16%	235.6	1.18%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-5.252e-01	1.0000	222.0	1.11%	225.1	1.13%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	-5.251e-01	1.0000	10.0	0.05%	11.0	0.05%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-5.201e-01	1.0000	2632.0	13.16%	2637.6	13.24%
ANL2(HB)/col-ANL2-DAP-Seq(GSE60143)/Homer	CATTAATTGC	1e0	-5.140e-01	1.0000	546.0	2.73%	551.8	2.77%
AREB3(bZIP)/col-AREB3-DAP-Seq(GSE60143)/Homer	NKGMCACGTGDCMNN	1e0	-5.124e-01	1.0000	523.0	2.61%	528.1	2.65%
bZIP3(bZIP)/col-bZIP3-DAP-Seq(GSE60143)/Homer	DWKNHSACGTGGCAD	1e0	-5.097e-01	1.0000	842.0	4.21%	848.5	4.26%
SeqBias: CG-repeat	CGCGCGCGCG	1e0	-5.091e-01	1.0000	4020.0	20.10%	4024.7	20.20%
ERF15(AP2EREBP)/colamp-ERF15-DAP-Seq(GSE60143)/Homer	WDHAGCMGCCAT	1e0	-5.080e-01	1.0000	3543.0	17.71%	3548.4	17.81%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-5.056e-01	1.0000	269.0	1.34%	273.5	1.37%
HAT5(Homeobox)/colamp-HAT5-DAP-Seq(GSE60143)/Homer	DCAATWATTG	1e0	-5.030e-01	1.0000	148.0	0.74%	151.6	0.76%
At3g45610(C2C2dof)/col-At3g45610-DAP-Seq(GSE60143)/Homer	TWACTTTTTS	1e0	-5.007e-01	1.0000	2676.0	13.38%	2683.9	13.47%
AT5G05550(Trihelix)/col-AT5G05550-DAP-Seq(GSE60143)/Homer	HDNHDTCKCCGGMGA	1e0	-4.840e-01	1.0000	2283.0	11.42%	2292.5	11.51%
At5g29000(G2like)/col-At5g29000-DAP-Seq(GSE60143)/Homer	RGAATATTCYHH	1e0	-4.814e-01	1.0000	281.0	1.41%	286.4	1.44%
NAP(NAC)/col-NAP-DAP-Seq(GSE60143)/Homer	ARGTTACGTRTN	1e0	-4.761e-01	1.0000	1181.0	5.91%	1190.9	5.98%
MYB67(MYB)/col-MYB67-DAP-Seq(GSE60143)/Homer	YYYACCTAAC	1e0	-4.732e-01	1.0000	1076.0	5.38%	1085.7	5.45%
AT3G57600(AP2EREBP)/col-AT3G57600-DAP-Seq(GSE60143)/Homer	GGCGGTGG	1e0	-4.727e-01	1.0000	1735.0	8.67%	1745.5	8.76%
AT1G01250(AP2EREBP)/col-AT1G01250-DAP-Seq(GSE60143)/Homer	YCACCGACAHTW	1e0	-4.678e-01	1.0000	48.0	0.24%	50.5	0.25%
MYB92(MYB)/colamp-MYB92-DAP-Seq(GSE60143)/Homer	GGTAGGTR	1e0	-4.614e-01	1.0000	1120.0	5.60%	1130.4	5.67%
bZIP68(bZIP)/col-bZIP68-DAP-Seq(GSE60143)/Homer	WGCCACGTGK	1e0	-4.583e-01	1.0000	557.0	2.79%	565.0	2.84%
ANAC103(NAC)/col-ANAC103-DAP-Seq(GSE60143)/Homer	AACTTGNWNWNCAAG	1e0	-4.566e-01	1.0000	396.0	1.98%	403.7	2.03%
ESE3(AP2EREBP)/col-ESE3-DAP-Seq(GSE60143)/Homer	GACGGTGG	1e0	-4.556e-01	1.0000	2353.0	11.77%	2365.6	11.87%
AT5G61620(MYBrelated)/colamp-AT5G61620-DAP-Seq(GSE60143)/Homer	CTTATCCA	1e0	-4.551e-01	1.0000	2188.0	10.94%	2200.3	11.04%
TCP16(TCP)/colamp-TCP16-DAP-Seq(GSE60143)/Homer	GTGGDCCYNNNNNNN	1e0	-4.539e-01	1.0000	696.0	3.48%	705.8	3.54%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-4.520e-01	1.0000	672.0	3.36%	681.7	3.42%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-4.497e-01	1.0000	857.0	4.29%	867.9	4.36%
IDD5(C2H2)/colamp-IDD5-DAP-Seq(GSE60143)/Homer	TTTTGTCTTTTTBTK	1e0	-4.467e-01	1.0000	1072.0	5.36%	1083.7	5.44%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-4.389e-01	1.0000	4210.0	21.05%	4223.4	21.20%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-4.385e-01	1.0000	2776.0	13.88%	2790.0	14.00%
SPL13(SBP)/col-SPL13-DAP-Seq(GSE60143)/Homer	WAHTGTACGGAH	1e0	-4.384e-01	1.0000	64.0	0.32%	67.0	0.34%
AT1G71450(AP2EREBP)/col-AT1G71450-DAP-Seq(GSE60143)/Homer	DHDWTGTCGGTG	1e0	-4.361e-01	1.0000	2144.0	10.72%	2158.1	10.83%
ABF2(bZIP)/col-ABF2-DAP-Seq(GSE60143)/Homer	KGMCACGTGDCMHHH	1e0	-4.351e-01	1.0000	392.0	1.96%	400.5	2.01%
MYB3(MYB)/Arabidopsis-MYB3-ChIP-Seq(GSE80564)/Homer	GKTAGGTRGG	1e0	-4.286e-01	1.0000	2356.0	11.78%	2371.8	11.90%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e0	-4.241e-01	1.0000	563.0	2.81%	573.1	2.88%
TCP17(TCP)/col-TCP17-DAP-Seq(GSE60143)/Homer	GTGGTCCCCA	1e0	-4.213e-01	1.0000	29.0	0.14%	31.5	0.16%
AT4G00250(GeBP)/col-AT4G00250-DAP-Seq(GSE60143)/Homer	WDTGGATAAKRT	1e0	-4.204e-01	1.0000	842.0	4.21%	854.5	4.29%
At1g72010(TCP)/colamp-At1g72010-DAP-Seq(GSE60143)/Homer	GGDCCCAC	1e0	-4.164e-01	1.0000	635.0	3.17%	646.4	3.24%
MYB94(MYB)/col-MYB94-DAP-Seq(GSE60143)/Homer	WGGTRGTTGGKA	1e0	-4.153e-01	1.0000	499.0	2.50%	510.0	2.56%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-4.094e-01	1.0000	1666.0	8.33%	1682.9	8.45%
LBD2(LOBAS2)/colamp-LBD2-DAP-Seq(GSE60143)/Homer	TCCGAWTTTTTCGGN	1e0	-4.057e-01	1.0000	351.0	1.75%	360.5	1.81%
VND2(NAC)/col-VND2-DAP-Seq(GSE60143)/Homer	DNCKTNNNNNNNAAG	1e0	-4.052e-01	1.0000	1006.0	5.03%	1020.9	5.12%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-4.049e-01	1.0000	109.0	0.55%	114.1	0.57%
MYB99(MYB)/colamp-MYB99-DAP-Seq(GSE60143)/Homer	GGTAGGTG	1e0	-4.038e-01	1.0000	984.0	4.92%	998.3	5.01%
At4g16750(AP2EREBP)/col-At4g16750-DAP-Seq(GSE60143)/Homer	HACCGACAHA	1e0	-4.031e-01	1.0000	654.0	3.27%	666.7	3.35%
IBL1(bHLH)/Seedling-IBL1-ChIP-Seq(GSE51120)/Homer	CACGTGCC	1e0	-3.918e-01	1.0000	3006.0	15.03%	3026.1	15.19%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-3.876e-01	1.0000	287.0	1.44%	296.4	1.49%
AT1G77200(AP2EREBP)/colamp-AT1G77200-DAP-Seq(GSE60143)/Homer	ACCGACAHWD	1e0	-3.829e-01	1.0000	733.0	3.67%	747.3	3.75%
BIM2(bHLH)/col-BIM2-DAP-Seq(GSE60143)/Homer	NNNNCACGTGNN	1e0	-3.779e-01	1.0000	1587.0	7.94%	1606.1	8.06%
WRKY45(WRKY)/col-WRKY45-DAP-Seq(GSE60143)/Homer	HNNNKTTGACTWWNH	1e0	-3.773e-01	1.0000	574.0	2.87%	587.3	2.95%
At5g08330(TCP)/col-At5g08330-DAP-Seq(GSE60143)/Homer	GGRCCCAC	1e0	-3.762e-01	1.0000	798.0	3.99%	813.0	4.08%
REM16(ABI3VP1)/col-REM16-DAP-Seq(GSE60143)/Homer	DTTTTTSCCGSMAAA	1e0	-3.726e-01	1.0000	2.0	0.01%	2.1	0.01%
MYB121(MYB)/col-MYB121-DAP-Seq(GSE60143)/Homer	YNTACCTAACWW	1e0	-3.700e-01	1.0000	365.0	1.82%	376.7	1.89%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-3.693e-01	1.0000	145.0	0.73%	152.3	0.76%
At1g22810(AP2EREBP)/colamp-At1g22810-DAP-Seq(GSE60143)/Homer	BCACCGACANNN	1e0	-3.689e-01	1.0000	436.0	2.18%	448.3	2.25%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-3.651e-01	1.0000	419.0	2.10%	431.5	2.17%
MYB65(MYB)/colamp-MYB65-DAP-Seq(GSE60143)/Homer	RACNGTTA	1e0	-3.623e-01	1.0000	1674.0	8.37%	1695.5	8.51%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-3.620e-01	1.0000	222.0	1.11%	231.5	1.16%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-3.606e-01	1.0000	100.0	0.50%	106.3	0.53%
TF3A(C2H2)/col-TF3A-DAP-Seq(GSE60143)/Homer	NNDDGAGGAGGWNNN	1e0	-3.600e-01	1.0000	2224.0	11.12%	2247.8	11.28%
GATA19(C2C2gata)/colamp-GATA19-DAP-Seq(GSE60143)/Homer	ATCSGATCVG	1e0	-3.541e-01	1.0000	46.0	0.23%	50.4	0.25%
TSO1(CPP)/col-TSO1-DAP-Seq(GSE60143)/Homer	RAATTTRAAW	1e0	-3.512e-01	1.0000	159.0	0.80%	167.6	0.84%
Unknown1(NR/Ini-like)/Drosophila-Promoters/Homer	MYGGTCACACTG	1e0	-3.498e-01	1.0000	245.0	1.23%	255.3	1.28%
At2g01060(G2like)/colamp-At2g01060-DAP-Seq(GSE60143)/Homer	AGATKCBNWW	1e0	-3.470e-01	1.0000	3756.0	18.78%	3783.3	18.99%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-3.456e-01	1.0000	3423.0	17.11%	3450.8	17.32%
MYB119(MYB)/colamp-MYB119-DAP-Seq(GSE60143)/Homer	YRACCGTTACDD	1e0	-3.423e-01	1.0000	396.0	1.98%	409.8	2.06%
FUS3(ABI3VP1)/col-FUS3-DAP-Seq(GSE60143)/Homer	DNNWTNTGCATGKNN	1e0	-3.420e-01	1.0000	1085.0	5.42%	1105.7	5.55%
dof45(C2C2dof)/col-dof45-DAP-Seq(GSE60143)/Homer	NVAWAAAGTN	1e0	-3.417e-01	1.0000	4327.0	21.63%	4355.6	21.86%
VND1(NAC)/col-VND1-DAP-Seq(GSE60143)/Homer	CTTRWDNHWYAAGYW	1e0	-3.408e-01	1.0000	820.0	4.10%	838.8	4.21%
AT3G10580(MYBrelated)/colamp-AT3G10580-DAP-Seq(GSE60143)/Homer	TACCTAACWNHW	1e0	-3.350e-01	1.0000	433.0	2.17%	447.0	2.24%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-3.317e-01	1.0000	2329.0	11.64%	2356.2	11.83%
MYB113(MYB)/col-MYB113-DAP-Seq(GSE60143)/Homer	HNDAWTCMGTTAYWN	1e0	-3.246e-01	1.0000	688.0	3.44%	706.3	3.55%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-3.231e-01	1.0000	2606.0	13.03%	2635.1	13.23%
bZIP28(bZIP)/col-bZIP28-DAP-Seq(GSE60143)/Homer	TGCCACGTSABH	1e0	-3.230e-01	1.0000	449.0	2.25%	464.4	2.33%
HLH-1(bHLH)/cElegans-Embryo-HLH1-ChIP-Seq(modEncode)/Homer	RACAGCTGTTBH	1e0	-3.227e-01	1.0000	979.0	4.90%	1000.4	5.02%
ANAC045(NAC)/col-ANAC045-DAP-Seq(GSE60143)/Homer	DNCKTVNNNNNNAMG	1e0	-3.138e-01	1.0000	2478.0	12.39%	2508.8	12.59%
VND6(NAC)/col-VND6-DAP-Seq(GSE60143)/Homer	DCTTNHTTTTYAMGY	1e0	-3.105e-01	1.0000	1199.0	6.00%	1223.2	6.14%
SFP1/SacCer-Promoters/Homer	DDAAAAATTTTY	1e0	-3.095e-01	1.0000	111.0	0.56%	119.9	0.60%
MYB61(MYB)/colamp-MYB61-DAP-Seq(GSE60143)/Homer	HCYACCTACC	1e0	-3.074e-01	1.0000	1774.0	8.87%	1802.6	9.05%
ARF2(ARF)/col-ARF2-DAP-Seq(GSE60143)/Homer	TTGTCGGMWN	1e0	-3.053e-01	1.0000	3727.0	18.63%	3761.7	18.88%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-3.050e-01	1.0000	2703.0	13.51%	2735.4	13.73%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-3.029e-01	1.0000	276.0	1.38%	289.3	1.45%
bZIP53(bZIP)/colamp-bZIP53-DAP-Seq(GSE60143)/Homer	NDNHSACGTGKMNNN	1e0	-3.012e-01	1.0000	482.0	2.41%	499.6	2.51%
HSF21(HSF)/col-HSF21-DAP-Seq(GSE60143)/Homer	CTTCTAGAAGMTTYW	1e0	-2.994e-01	1.0000	10.0	0.05%	12.6	0.06%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-2.967e-01	1.0000	925.0	4.62%	948.9	4.76%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-2.966e-01	1.0000	222.0	1.11%	234.3	1.18%
GAGA-repeat/SacCer-Promoters/Homer	CTYTCTYTCTCTCTC	1e0	-2.944e-01	1.0000	6878.0	34.39%	6913.9	34.70%
EIN3(EIL)/col-EIN3-DAP-Seq(GSE60143)/Homer	ARATTCAATGWATYT	1e0	-2.942e-01	1.0000	151.0	0.76%	161.7	0.81%
CBF3(AP2EREBP)/colamp-CBF3-DAP-Seq(GSE60143)/Homer	YNRCCGACATNN	1e0	-2.934e-01	1.0000	449.0	2.25%	466.2	2.34%
AT5G25475(ABI3VP1)/col-AT5G25475-DAP-Seq(GSE60143)/Homer	RNNRNCAAGCADNDB	1e0	-2.903e-01	1.0000	1295.0	6.48%	1322.4	6.64%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e0	-2.895e-01	1.0000	1054.0	5.27%	1079.6	5.42%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-2.858e-01	1.0000	1488.0	7.44%	1517.7	7.62%
NAM(NAC)/col-NAM-DAP-Seq(GSE60143)/Homer	RGTTRCGTRW	1e0	-2.824e-01	1.0000	1570.0	7.85%	1600.2	8.03%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-2.815e-01	1.0000	404.0	2.02%	421.6	2.12%
bZIP16(bZIP)/colamp-bZIP16-DAP-Seq(GSE60143)/Homer	TGCCACGTGD	1e0	-2.784e-01	1.0000	445.0	2.23%	463.3	2.33%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-2.775e-01	1.0000	1621.0	8.11%	1652.7	8.30%
CBF2(AP2EREBP)/colamp-CBF2-DAP-Seq(GSE60143)/Homer	YBRCCGACATNNNNN	1e0	-2.737e-01	1.0000	427.0	2.14%	445.7	2.24%
At1g25550(G2like)/colamp-At1g25550-DAP-Seq(GSE60143)/Homer	NAGATTCY	1e0	-2.710e-01	1.0000	1153.0	5.76%	1181.0	5.93%
RAP21(AP2EREBP)/colamp-RAP21-DAP-Seq(GSE60143)/Homer	BCACCGACAHNN	1e0	-2.686e-01	1.0000	123.0	0.61%	133.5	0.67%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e0	-2.670e-01	1.0000	2025.0	10.12%	2060.2	10.34%
ATHB53(HB)/col-ATHB53-DAP-Seq(GSE60143)/Homer	CAATAATT	1e0	-2.669e-01	1.0000	626.0	3.13%	648.2	3.25%
TGA1(bZIP)/colamp-TGA1-DAP-Seq(GSE60143)/Homer	TGACGTCAKC	1e0	-2.630e-01	1.0000	972.0	4.86%	1000.0	5.02%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-2.625e-01	1.0000	168.0	0.84%	180.8	0.91%
TBP3(MYBrelated)/col-TBP3-DAP-Seq(GSE60143)/Homer	VYTAGGGCAN	1e0	-2.602e-01	1.0000	1033.0	5.17%	1061.8	5.33%
ATY13(MYB)/col-ATY13-DAP-Seq(GSE60143)/Homer	YYYAACYRHH	1e0	-2.591e-01	1.0000	4686.0	23.43%	4730.7	23.74%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-2.591e-01	1.0000	334.0	1.67%	351.4	1.76%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	-2.548e-01	1.0000	3.0	0.01%	4.2	0.02%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-2.543e-01	1.0000	321.0	1.60%	338.3	1.70%
GATA14(C2C2gata)/col-GATA14-DAP-Seq(GSE60143)/Homer	AYCAGATCTG	1e0	-2.533e-01	1.0000	740.0	3.70%	765.9	3.84%
bHLH34(bHLH)/colamp-bHLH34-DAP-Seq(GSE60143)/Homer	HGWGRHWGACACGTG	1e0	-2.501e-01	1.0000	487.0	2.44%	508.5	2.55%
MYB49(MYB)/col-MYB49-DAP-Seq(GSE60143)/Homer	ARKTAGGTRR	1e0	-2.457e-01	1.0000	1242.0	6.21%	1274.6	6.40%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e0	-2.450e-01	1.0000	819.0	4.09%	846.9	4.25%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-2.396e-01	1.0000	2915.0	14.57%	2959.8	14.86%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-2.336e-01	1.0000	3125.0	15.62%	3171.4	15.92%
At5g47390(MYBrelated)/col-At5g47390-DAP-Seq(GSE60143)/Homer	CTTATCCA	1e0	-2.268e-01	1.0000	1959.0	9.79%	2000.4	10.04%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-2.251e-01	1.0000	629.0	3.15%	655.7	3.29%
AT4G26030(C2H2)/col-AT4G26030-DAP-Seq(GSE60143)/Homer	BYYACCWACY	1e0	-2.222e-01	1.0000	1144.0	5.72%	1178.3	5.91%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e0	-2.217e-01	1.0000	467.0	2.33%	490.6	2.46%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-2.189e-01	1.0000	213.0	1.06%	229.4	1.15%
CELF2(RRM)/JSL1-CELF2-CLIP-Seq(GSE71264)/Homer	RGTGTCAG	1e0	-2.168e-01	1.0000	369.0	1.85%	390.1	1.96%
AT3G09735(S1Falike)/col-AT3G09735-DAP-Seq(GSE60143)/Homer	TTCTAGAANMTTCTA	1e0	-2.158e-01	1.0000	404.0	2.02%	426.3	2.14%
ANAC079(NAC)/colamp-ANAC079-DAP-Seq(GSE60143)/Homer	TACACGCAACCT	1e0	-2.141e-01	1.0000	361.0	1.80%	382.3	1.92%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e0	-2.133e-01	1.0000	1476.0	7.38%	1515.4	7.61%
MYB62(MYB)/colamp-MYB62-DAP-Seq(GSE60143)/Homer	NTACCTAACT	1e0	-2.129e-01	1.0000	1469.0	7.34%	1508.7	7.57%
MYB58(MYB)/colamp-MYB58-DAP-Seq(GSE60143)/Homer	YYYACCWACC	1e0	-2.102e-01	1.0000	1093.0	5.46%	1128.1	5.66%
At1g19000(MYBrelated)/colamp-At1g19000-DAP-Seq(GSE60143)/Homer	WWTGGATAADDT	1e0	-2.101e-01	1.0000	1251.0	6.25%	1288.2	6.47%
WRKY46(WRKY)/colamp-WRKY46-DAP-Seq(GSE60143)/Homer	AAAGTCAACGSN	1e0	-2.099e-01	1.0000	78.0	0.39%	88.0	0.44%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-2.097e-01	1.0000	1088.0	5.44%	1123.3	5.64%
CES-1(Homeobox)/cElegans-L1-CES1-ChIP-Seq(modEncode)/Homer	AAATTSAATTTN	1e0	-2.094e-01	1.0000	648.0	3.24%	676.9	3.40%
GBF5(bZIP)/colamp-GBF5-DAP-Seq(GSE60143)/Homer	WKNWSACGTGGCAWN	1e0	-2.080e-01	1.0000	499.0	2.50%	524.5	2.63%
ABF1/SacCer-Promoters/Homer	CGTRNAAARTGA	1e0	-2.073e-01	1.0000	220.0	1.10%	237.3	1.19%
ZML1(C2C2gata)/colamp-ZML1-DAP-Seq(GSE60143)/Homer	ATCWYRACCGTTSRW	1e0	-2.061e-01	1.0000	2.0	0.01%	3.2	0.02%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-2.034e-01	1.0000	331.0	1.65%	353.0	1.77%
At1g19210(AP2EREBP)/colamp-At1g19210-DAP-Seq(GSE60143)/Homer	HCACCGACCAHN	1e0	-2.018e-01	1.0000	1587.0	7.94%	1629.2	8.18%
AT1G28160(AP2EREBP)/colamp-AT1G28160-DAP-Seq(GSE60143)/Homer	GGCGGCGG	1e0	-2.002e-01	1.0000	3567.0	17.84%	3622.4	18.18%
MYB55(MYB)/colamp-MYB55-DAP-Seq(GSE60143)/Homer	YACCWAMC	1e0	-1.976e-01	1.0000	1261.0	6.30%	1300.1	6.53%
bZIP48(bZIP)/colamp-bZIP48-DAP-Seq(GSE60143)/Homer	DDWWKVTSACGTGGC	1e0	-1.966e-01	1.0000	536.0	2.68%	563.7	2.83%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e0	-1.960e-01	1.0000	2910.0	14.55%	2963.8	14.88%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-1.956e-01	1.0000	3298.0	16.49%	3353.9	16.83%
MYB3R5(MYB)/col-MYB3R5-DAP-Seq(GSE60143)/Homer	THYAACGGTHAWAWT	1e0	-1.910e-01	1.0000	55.0	0.27%	64.3	0.32%
Unknown4/Arabidopsis-Promoters/Homer	CKTCKTCTTY	1e0	-1.890e-01	1.0000	1161.0	5.80%	1200.7	6.03%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e0	-1.871e-01	1.0000	1934.0	9.67%	1982.4	9.95%
GT1(Trihelix)/col-GT1-DAP-Seq(GSE60143)/Homer	TTAACCATGGTTAAD	1e0	-1.861e-01	1.0000	12.0	0.06%	16.8	0.08%
SeqBias: polyC-repeat	CCCCCCCCCC	1e0	-1.852e-01	1.0000	19278.0	96.39%	19238.4	96.56%
JGL(C2H2)/col-JGL-DAP-Seq(GSE60143)/Homer	ACYTTCAGTT	1e0	-1.780e-01	1.0000	2572.0	12.86%	2627.8	13.19%
CBF4(AP2EREBP)/colamp-CBF4-DAP-Seq(GSE60143)/Homer	NRCCGACDWNNNNNN	1e0	-1.759e-01	1.0000	609.0	3.04%	640.0	3.21%
SPCH(bHLH)/Seedling-SPCH-ChIP-Seq(GSE57497)/Homer	WNBCACGTGA	1e0	-1.755e-01	1.0000	2116.0	10.58%	2168.0	10.88%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-1.743e-01	1.0000	150.0	0.75%	167.0	0.84%
STZ(C2H2)/colamp-STZ-DAP-Seq(GSE60143)/Homer	HNBTCACT	1e0	-1.735e-01	1.0000	9989.0	49.95%	10049.6	50.44%
AT5G22990(C2H2)/col-AT5G22990-DAP-Seq(GSE60143)/Homer	WCGAHDTCGWHN	1e0	-1.726e-01	1.0000	38.0	0.19%	46.5	0.23%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-1.642e-01	1.0000	78.0	0.39%	90.4	0.45%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-1.618e-01	1.0000	467.0	2.33%	496.2	2.49%
WRKY17(WRKY)/colamp-WRKY17-DAP-Seq(GSE60143)/Homer	GCGTTGACTTTT	1e0	-1.614e-01	1.0000	6.0	0.03%	10.0	0.05%
ATY19(MYB)/col-ATY19-DAP-Seq(GSE60143)/Homer	YYCACCWACCAT	1e0	-1.602e-01	1.0000	741.0	3.71%	777.8	3.90%
At2g03500(G2like)/col-At2g03500-DAP-Seq(GSE60143)/Homer	WWAGAATATTCT	1e0	-1.601e-01	1.0000	257.0	1.29%	279.2	1.40%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e0	-1.588e-01	1.0000	2908.0	14.54%	2970.3	14.91%
At4g36780(BZR)/col-At4g36780-DAP-Seq(GSE60143)/Homer	NNNNNNCACGTGNNN	1e0	-1.585e-01	1.0000	390.0	1.95%	417.2	2.09%
AtHB32(ZFHD)/col200-AtHB32-DAP-Seq(GSE60143)/Homer	CGAATTAT	1e0	-1.581e-01	1.0000	1662.0	8.31%	1713.8	8.60%
At3g24120(G2like)/col-At3g24120-DAP-Seq(GSE60143)/Homer	NWWAGMATMW	1e0	-1.575e-01	1.0000	3980.0	19.90%	4048.4	20.32%
PLT3(AP2EREBP)/col-PLT3-DAP-Seq(GSE60143)/Homer	GCACGNWTHYCGAGG	1e0	-1.529e-01	1.0000	60.0	0.30%	71.6	0.36%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	-1.528e-01	1.0000	1098.0	5.49%	1142.4	5.73%
KANADI1(Myb)/Seedling-KAN1-ChIP-Seq(GSE48081)/Homer	ARGAATAWWN	1e0	-1.506e-01	1.0000	1392.0	6.96%	1441.9	7.24%
Unknown3/Arabidopsis-Promoters/Homer	AYTAAACCGG	1e0	-1.503e-01	1.0000	157.0	0.78%	175.4	0.88%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-1.494e-01	1.0000	282.0	1.41%	306.5	1.54%
AIL7(AP2EREBP)/colamp-AIL7-DAP-Seq(GSE60143)/Homer	KCACRAWTYYCGAGG	1e0	-1.472e-01	1.0000	510.0	2.55%	542.0	2.72%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e0	-1.470e-01	1.0000	443.0	2.21%	473.7	2.38%
WRKY8(WRKY)/colamp-WRKY8-DAP-Seq(GSE60143)/Homer	CGTTGACTTT	1e0	-1.447e-01	1.0000	186.0	0.93%	206.8	1.04%
NUC(C2H2)/col-NUC-DAP-Seq(GSE60143)/Homer	HAVAAAACGACAAAA	1e0	-1.426e-01	1.0000	102.0	0.51%	117.2	0.59%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	-1.414e-01	1.0000	5.0	0.03%	8.6	0.04%
SPL3(SBP)/colamp-SPL3-DAP-Seq(GSE60143)/Homer	WDTTGTACGGAH	1e0	-1.408e-01	1.0000	17.0	0.08%	23.2	0.12%
RLR1?/SacCer-Promoters/Homer	WTTTTCYYTTTT	1e0	-1.404e-01	1.0000	1139.0	5.70%	1186.7	5.96%
At5g18450(AP2EREBP)/col-At5g18450-DAP-Seq(GSE60143)/Homer	CACCGCTT	1e0	-1.385e-01	1.0000	2696.0	13.48%	2762.8	13.87%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-1.378e-01	1.0000	6894.0	34.47%	6974.1	35.00%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e0	-1.370e-01	1.0000	1403.0	7.02%	1455.9	7.31%
At1g69690(TCP)/colamp-At1g69690-DAP-Seq(GSE60143)/Homer	NHGTGGGGCCCACHW	1e0	-1.356e-01	1.0000	230.0	1.15%	253.2	1.27%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-1.353e-01	1.0000	190.0	0.95%	211.3	1.06%
MYB81(MYB)/col-MYB81-DAP-Seq(GSE60143)/Homer	NWAACSGWTWNN	1e0	-1.267e-01	1.0000	2325.0	11.62%	2391.4	12.00%
Unknown2/Drosophila-Promoters/Homer	CATCMCTA	1e0	-1.258e-01	1.0000	1435.0	7.17%	1490.5	7.48%
AT5G56840(MYBrelated)/colamp-AT5G56840-DAP-Seq(GSE60143)/Homer	TGGATAAGGT	1e0	-1.201e-01	1.0000	1978.0	9.89%	2042.7	10.25%
SeqBias: TA-repeat	TATATATATA	1e0	-1.189e-01	1.0000	4427.0	22.13%	4511.0	22.64%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e0	-1.186e-01	1.0000	716.0	3.58%	758.0	3.80%
At3g09600(MYBrelated)/colamp-At3g09600-DAP-Seq(GSE60143)/Homer	AAAATATCTT	1e0	-1.178e-01	1.0000	538.0	2.69%	575.9	2.89%
BOS1(MYB)/col-BOS1-DAP-Seq(GSE60143)/Homer	NNRCCTAACT	1e0	-1.170e-01	1.0000	1046.0	5.23%	1096.0	5.50%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	-1.148e-01	1.0000	2.0	0.01%	4.1	0.02%
VRN1(ABI3VP1)/col-VRN1-DAP-Seq(GSE60143)/Homer	TTTTTTTTTT	1e0	-1.108e-01	1.0000	534.0	2.67%	572.0	2.87%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-1.097e-01	1.0000	342.0	1.71%	373.5	1.87%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-1.094e-01	1.0000	6.0	0.03%	10.3	0.05%
At1g13300(G2like)/col-At1g13300-DAP-Seq(GSE60143)/Homer	GAATCTWAGATTCYN	1e0	-1.094e-01	1.0000	6.0	0.03%	10.1	0.05%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e0	-1.085e-01	1.0000	1602.0	8.01%	1664.1	8.35%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-1.065e-01	1.0000	108.0	0.54%	127.0	0.64%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-1.047e-01	1.0000	2254.0	11.27%	2326.5	11.68%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-1.033e-01	1.0000	117.0	0.58%	136.5	0.68%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e0	-1.030e-01	1.0000	1761.0	8.80%	1827.2	9.17%
At5g62940(C2C2dof)/col-At5g62940-DAP-Seq(GSE60143)/Homer	WHWHHACTTTTT	1e0	-1.023e-01	1.0000	5614.0	28.07%	5708.6	28.65%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e0	-1.022e-01	1.0000	4674.0	23.37%	4765.6	23.92%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e0	-1.015e-01	1.0000	339.0	1.70%	371.9	1.87%
GATA6(C2C2gata)/col200-GATA6-DAP-Seq(GSE60143)/Homer	TAGATCTARAHH	1e0	-9.987e-02	1.0000	80.0	0.40%	96.5	0.48%
DDF2(AP2EREBP)/col-DDF2-DAP-Seq(GSE60143)/Homer	GATGTCGRCR	1e0	-9.905e-02	1.0000	20.0	0.10%	28.9	0.15%
GBF3(bZIP)/Arabidopsis-GBF3-ChIP-Seq(GSE80564)/Homer	TGCCACGTSAYC	1e0	-9.903e-02	1.0000	657.0	3.28%	701.3	3.52%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-9.742e-02	1.0000	821.0	4.11%	870.8	4.37%
MYB74(MYB)/colamp-MYB74-DAP-Seq(GSE60143)/Homer	YYYACCTACCWH	1e0	-9.722e-02	1.0000	678.0	3.39%	723.5	3.63%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-9.583e-02	1.0000	225.0	1.12%	253.0	1.27%
MYB13(MYB)/col-MYB13-DAP-Seq(GSE60143)/Homer	HYCACCWACCHH	1e0	-9.534e-02	1.0000	841.0	4.21%	891.4	4.47%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	-9.509e-02	1.0000	11.0	0.06%	17.5	0.09%
CEJ1(AP2EREBP)/col-CEJ1-DAP-Seq(GSE60143)/Homer	WWTGTCGGTG	1e0	-9.272e-02	1.0000	1059.0	5.29%	1115.2	5.60%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-8.497e-02	1.0000	489.0	2.44%	531.0	2.67%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-8.496e-02	1.0000	2851.0	14.26%	2938.0	14.75%
MYB10(MYB)/col-MYB10-DAP-Seq(GSE60143)/Homer	YCCACCTACCHH	1e0	-8.088e-02	1.0000	421.0	2.10%	460.4	2.31%
ANAC017(NAC)/colamp-ANAC017-DAP-Seq(GSE60143)/Homer	TMCTTGNNNNNCAAG	1e0	-8.077e-02	1.0000	75.0	0.38%	92.8	0.47%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e0	-8.049e-02	1.0000	58.0	0.29%	73.5	0.37%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-7.905e-02	1.0000	413.0	2.07%	452.3	2.27%
TATA-box/Drosophila-Promoters/Homer	CTATAAAAGCSV	1e0	-7.558e-02	1.0000	99.0	0.50%	119.2	0.60%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-7.525e-02	1.0000	1416.0	7.08%	1485.2	7.45%
DEAR5(AP2EREBP)/col-DEAR5-DAP-Seq(GSE60143)/Homer	NDWTGTCGGTGRWDN	1e0	-7.447e-02	1.0000	119.0	0.60%	141.4	0.71%
CBF1(AP2EREBP)/colamp-CBF1-DAP-Seq(GSE60143)/Homer	YRCCGACATN	1e0	-7.418e-02	1.0000	671.0	3.36%	721.2	3.62%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-7.280e-02	1.0000	1422.0	7.11%	1492.9	7.49%
GRF9(GRF)/colamp-GRF9-DAP-Seq(GSE60143)/Homer	NWCTGACANNNNNNN	1e0	-7.026e-02	1.0000	1117.0	5.58%	1181.6	5.93%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e0	-7.017e-02	1.0000	1076.0	5.38%	1139.6	5.72%
AT2G01818(PLATZ)/col-AT2G01818-DAP-Seq(GSE60143)/Homer	TCTAGAABSTTC	1e0	-6.888e-02	1.0000	112.0	0.56%	134.1	0.67%
REM19(REM)/colamp-REM19-DAP-Seq(GSE60143)/Homer	AAAAAAAA	1e0	-6.807e-02	1.0000	1252.0	6.26%	1320.0	6.63%
HSFA6B(HSF)/colamp-HSFA6B-DAP-Seq(GSE60143)/Homer	NTTCTAGAANHTTCT	1e0	-6.685e-02	1.0000	468.0	2.34%	512.8	2.57%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-6.461e-02	1.0000	867.0	4.33%	926.4	4.65%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-5.976e-02	1.0000	543.0	2.71%	592.1	2.97%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-5.876e-02	1.0000	2687.0	13.44%	2784.9	13.98%
bHLH74(bHLH)/col-bHLH74-DAP-Seq(GSE60143)/Homer	DRATCACGTGAB	1e0	-5.872e-02	1.0000	490.0	2.45%	537.4	2.70%
ANAC094(NAC)/col-ANAC094-DAP-Seq(GSE60143)/Homer	DVCGTRNNNNNYACG	1e0	-5.822e-02	1.0000	465.0	2.33%	511.7	2.57%
HSFB3(HSF)/colamp-HSFB3-DAP-Seq(GSE60143)/Homer	TTCTAGAAGMTTHTW	1e0	-5.550e-02	1.0000	3.0	0.01%	7.5	0.04%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e0	-5.320e-02	1.0000	1294.0	6.47%	1369.9	6.88%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e0	-5.278e-02	1.0000	395.0	1.98%	439.5	2.21%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-5.221e-02	1.0000	163.0	0.81%	192.8	0.97%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e0	-4.887e-02	1.0000	1072.0	5.36%	1143.9	5.74%
AT2G31460(REMB3)/col-AT2G31460-DAP-Seq(GSE60143)/Homer	WNWARWDGAAATGAT	1e0	-4.861e-02	1.0000	558.0	2.79%	611.0	3.07%
PQM-1(?)/cElegans-L3-ChIP-Seq(modEncode)/Homer	ACTGATAAGA	1e0	-4.821e-02	1.0000	900.0	4.50%	966.3	4.85%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-4.809e-02	1.0000	961.0	4.81%	1029.8	5.17%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e0	-4.775e-02	1.0000	2300.0	11.50%	2398.1	12.04%
bZIP50(bZIP)/colamp-bZIP50-DAP-Seq(GSE60143)/Homer	GATGACGTCA	1e0	-4.640e-02	1.0000	2019.0	10.10%	2113.6	10.61%
Pho2(bHLH)/Yeast-Pho2-ChIP-Seq(GSE29506)/Homer	CCCACGTGCT	1e0	-4.580e-02	1.0000	605.0	3.02%	661.1	3.32%
MYB51(MYB)/col-MYB51-DAP-Seq(GSE60143)/Homer	GGTAGGTG	1e0	-4.544e-02	1.0000	865.0	4.32%	931.7	4.68%
PIF5ox(bHLH)/Arabidopsis-PIF5ox-ChIP-Seq(GSE35062)/Homer	BCACGTGVDN	1e0	-4.480e-02	1.0000	1914.0	9.57%	2007.5	10.08%
AT1G19040(NAC)/col-AT1G19040-DAP-Seq(GSE60143)/Homer	CTTGNDNHNCAAGYW	1e0	-4.213e-02	1.0000	59.0	0.29%	78.5	0.39%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e0	-3.616e-02	1.0000	750.0	3.75%	816.8	4.10%
ARF16(ARF)/col-ARF16-DAP-Seq(GSE60143)/Homer	ATTTTACGAT	1e0	-3.592e-02	1.0000	139.0	0.69%	169.6	0.85%
MYB39(MYB)/col-MYB39-DAP-Seq(GSE60143)/Homer	WWAARKTAGGTGRAA	1e0	-3.456e-02	1.0000	136.0	0.68%	166.2	0.83%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-3.390e-02	1.0000	1350.0	6.75%	1437.4	7.21%
ANAC046(NAC)/colamp-ANAC046-DAP-Seq(GSE60143)/Homer	ACACGYWAYC	1e0	-3.376e-02	1.0000	2579.0	12.90%	2692.8	13.52%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-3.264e-02	1.0000	1183.0	5.92%	1266.4	6.36%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-3.231e-02	1.0000	131.0	0.66%	161.2	0.81%
ANAC038(NAC)/col-ANAC038-DAP-Seq(GSE60143)/Homer	ACACGTWAYC	1e0	-3.211e-02	1.0000	2935.0	14.67%	3055.7	15.34%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-3.146e-02	1.0000	976.0	4.88%	1053.8	5.29%
SeqBias: GA-repeat	GAGAGAGAGA	1e0	-3.067e-02	1.0000	11287.0	56.44%	11428.6	57.36%
Unknown6/Drosophila-Promoters/Homer	AATTTTAAAA	1e0	-3.057e-02	1.0000	1077.0	5.38%	1158.8	5.82%
PLT1(AP2EREBP)/colamp-PLT1-DAP-Seq(GSE60143)/Homer	GCACGAWTYCCGAGG	1e0	-2.954e-02	1.0000	108.0	0.54%	136.6	0.69%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-2.909e-02	1.0000	804.0	4.02%	876.1	4.40%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e0	-2.897e-02	1.0000	905.0	4.52%	981.1	4.92%
MYB27(MYB)/colamp-MYB27-DAP-Seq(GSE60143)/Homer	TACCTAACWT	1e0	-2.782e-02	1.0000	188.0	0.94%	225.0	1.13%
AT1G47655(C2C2dof)/colamp-AT1G47655-DAP-Seq(GSE60143)/Homer	YHACTTTTTS	1e0	-2.751e-02	1.0000	6114.0	30.57%	6267.9	31.46%
Unknown4/Drosophila-Promoters/Homer	AAAAATACCRMA	1e0	-2.682e-02	1.0000	145.0	0.73%	178.6	0.90%
AT1G76870(Trihelix)/col-AT1G76870-DAP-Seq(GSE60143)/Homer	AAAACCRGWW	1e0	-2.454e-02	1.0000	512.0	2.56%	573.0	2.88%
MYB30(MYB)/colamp-MYB30-DAP-Seq(GSE60143)/Homer	AGGTAGTTGG	1e0	-2.353e-02	1.0000	1414.0	7.07%	1512.0	7.59%
HSF3(HSF)/colamp-HSF3-DAP-Seq(GSE60143)/Homer	NTTCTAGAAKCTTCT	1e0	-2.209e-02	1.0000	1037.0	5.18%	1123.1	5.64%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-2.148e-02	1.0000	3943.0	19.71%	4089.3	20.52%
AT5G02460(C2C2dof)/col-AT5G02460-DAP-Seq(GSE60143)/Homer	CHCCTTTT	1e0	-2.123e-02	1.0000	3582.0	17.91%	3724.2	18.69%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-2.121e-02	1.0000	249.0	1.24%	294.9	1.48%
MYB4(MYB)/col200-MYB4-DAP-Seq(GSE60143)/Homer	WAGKTAGGTARR	1e0	-2.076e-02	1.0000	657.0	3.28%	729.0	3.66%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-1.933e-02	1.0000	441.0	2.21%	502.0	2.52%
SVP(MADS)/col-SVP-DAP-Seq(GSE60143)/Homer	ANTTWCCHAATTTGG	1e0	-1.913e-02	1.0000	652.0	3.26%	724.2	3.63%
MYB77(MYB)/col-MYB77-DAP-Seq(GSE60143)/Homer	NYAACBGYMC	1e0	-1.894e-02	1.0000	1858.0	9.29%	1972.4	9.90%
Replumless(BLH)/Arabidopsis-RPL.GFP-ChIP-Seq(GSE78727)/Homer	HGTCWHATCA	1e0	-1.878e-02	1.0000	1587.0	7.94%	1694.7	8.51%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-1.840e-02	1.0000	137.0	0.69%	172.2	0.86%
DEAR2(AP2EREBP)/colamp-DEAR2-DAP-Seq(GSE60143)/Homer	HCACCGACAWHD	1e0	-1.741e-02	1.0000	1216.0	6.08%	1313.5	6.59%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-1.622e-02	1.0000	469.0	2.34%	533.1	2.68%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e0	-1.588e-02	1.0000	715.0	3.57%	793.2	3.98%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-1.554e-02	1.0000	283.0	1.42%	334.4	1.68%
ABF1(bZIP)/Arabidopsis-ABF1-ChIP-Seq(GSE80564)/Homer	CACGTGGC	1e0	-1.528e-02	1.0000	1406.0	7.03%	1512.2	7.59%
SeqBias: polyA-repeat	AAAAAAAAAA	1e0	-1.478e-02	1.0000	18606.0	93.03%	18642.3	93.57%
ELT-3(Gata)/cElegans-L1-ELT3-ChIP-Seq(modEncode)/Homer	AWTGATAAGA	1e0	-1.455e-02	1.0000	970.0	4.85%	1061.5	5.33%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-1.452e-02	1.0000	139.0	0.69%	176.3	0.89%
DEL1(E2FDP)/colamp-DEL1-DAP-Seq(GSE60143)/Homer	TTCCCGCCAA	1e0	-1.440e-02	1.0000	10.0	0.05%	21.4	0.11%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-1.413e-02	1.0000	239.0	1.20%	287.6	1.44%
ATHB21(HB)/colamp-ATHB21-DAP-Seq(GSE60143)/Homer	YCAATWAT	1e0	-1.392e-02	1.0000	676.0	3.38%	754.9	3.79%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e0	-1.389e-02	1.0000	248.0	1.24%	298.0	1.50%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e0	-1.380e-02	1.0000	1174.0	5.87%	1274.6	6.40%
E2FA(E2FDP)/colamp-E2FA-DAP-Seq(GSE60143)/Homer	WWTGGCGCCAWWWNN	1e0	-1.369e-02	1.0000	616.0	3.08%	691.2	3.47%
SEP3(MADS)/Arabidoposis-Flower-Sep3-ChIP-Seq/Homer	CCAAAAAGGG	1e0	-1.323e-02	1.0000	1768.0	8.84%	1888.4	9.48%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-1.272e-02	1.0000	57.0	0.29%	82.9	0.42%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-1.238e-02	1.0000	2987.0	14.94%	3136.2	15.74%
MYB3R1(MYB)/col-MYB3R1-DAP-Seq(GSE60143)/Homer	WWDTDACCGTTR	1e0	-1.192e-02	1.0000	254.0	1.27%	305.0	1.53%
LCL1(MYBrelated)/colamp-LCL1-DAP-Seq(GSE60143)/Homer	NAAAATATCTWHWWN	1e0	-1.098e-02	1.0000	171.0	0.85%	214.4	1.08%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-1.072e-02	1.0000	20.0	0.10%	36.4	0.18%
Unknown1/Arabidopsis-Promoters/Homer	RGGGTAWWWTHGTAA	1e0	-1.054e-02	1.0000	102.0	0.51%	137.0	0.69%
AtGRF6(GRF)/col-AtGRF6-DAP-Seq(GSE60143)/Homer	NTGTCAGADNNNNNN	1e0	-1.001e-02	1.0000	1477.0	7.38%	1594.8	8.00%
GEI-11(Myb?)/cElegans-L4-GEI11-ChIP-Seq(modEncode)/Homer	CCGACAYYTYACGGG	1e0	-9.656e-03	1.0000	65.0	0.33%	93.1	0.47%
SeqBias: C/A-bias	MMMMMMMMMM	1e0	-9.577e-03	1.0000	19950.0	99.75%	19893.4	99.85%
AT2G20400(G2like)/colamp-AT2G20400-DAP-Seq(GSE60143)/Homer	DNVGAATATTCBNHN	1e0	-9.552e-03	1.0000	111.0	0.56%	147.5	0.74%
ANAC042(NAC)/col-ANAC042-DAP-Seq(GSE60143)/Homer	CGTNDHNDHNACGKY	1e0	-9.503e-03	1.0000	986.0	4.93%	1085.0	5.45%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-9.380e-03	1.0000	612.0	3.06%	692.7	3.48%
PIF7(bHLH)/col-PIF7-DAP-Seq(GSE60143)/Homer	CCACGTGGNH	1e0	-8.904e-03	1.0000	334.0	1.67%	395.3	1.98%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-8.877e-03	1.0000	435.0	2.17%	504.0	2.53%
At2g45680(TCP)/colamp-At2g45680-DAP-Seq(GSE60143)/Homer	GTGGGNCCCACNDND	1e0	-8.857e-03	1.0000	45.0	0.22%	69.8	0.35%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e0	-7.275e-03	1.0000	529.0	2.65%	607.9	3.05%
MYB3R4(MYB)/col-MYB3R4-DAP-Seq(GSE60143)/Homer	AWWTAACCGTTR	1e0	-7.121e-03	1.0000	112.0	0.56%	150.8	0.76%
MYB63(MYB)/col-MYB63-DAP-Seq(GSE60143)/Homer	BHYACCWACCHH	1e0	-7.058e-03	1.0000	467.0	2.33%	541.8	2.72%
AT1G24250(Orphan)/col-AT1G24250-DAP-Seq(GSE60143)/Homer	KTDGTTGGTDGTTGG	1e0	-7.045e-03	1.0000	297.0	1.49%	358.0	1.80%
At5g08520(MYBrelated)/colamp-At5g08520-DAP-Seq(GSE60143)/Homer	ADBSTTATCY	1e0	-6.996e-03	1.0000	1938.0	9.69%	2077.7	10.43%
SeqBias: CA-repeat	CACACACACA	1e0	-6.802e-03	1.0000	8029.0	40.14%	8239.6	41.36%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e0	-6.771e-03	1.0000	1541.0	7.70%	1668.0	8.37%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	-5.828e-03	1.0000	505.0	2.53%	584.3	2.93%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-5.583e-03	1.0000	109.0	0.55%	148.5	0.75%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-5.540e-03	1.0000	1119.0	5.59%	1233.1	6.19%
At5g58900(MYBrelated)/colamp-At5g58900-DAP-Seq(GSE60143)/Homer	WWWTYTTATCTWWWW	1e0	-5.398e-03	1.0000	2668.0	13.34%	2832.3	14.22%
bZIP42(bZIP)/colamp-bZIP42-DAP-Seq(GSE60143)/Homer	GCCACGTCAGCA	1e0	-5.175e-03	1.0000	9.0	0.04%	22.6	0.11%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-5.040e-03	1.0000	960.0	4.80%	1068.1	5.36%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-4.978e-03	1.0000	220.0	1.10%	275.9	1.38%
caudal(Homeobox)/Drosophila-Embryos-ChIP-Chip(modEncode)/Homer	GGYCATAAAW	1e0	-4.477e-03	1.0000	1065.0	5.33%	1180.3	5.92%
TCP7(TCP)/col-TCP7-DAP-Seq(GSE60143)/Homer	GTGGGSCCCACHHNN	1e0	-4.363e-03	1.0000	690.0	3.45%	785.7	3.94%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-3.488e-03	1.0000	2076.0	10.38%	2234.1	11.21%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-3.414e-03	1.0000	1758.0	8.79%	1906.4	9.57%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	-3.176e-03	1.0000	44.0	0.22%	72.3	0.36%
MYB40(MYB)/col-MYB40-DAP-Seq(GSE60143)/Homer	TGGTAGGTRARA	1e0	-3.029e-03	1.0000	360.0	1.80%	434.2	2.18%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-3.018e-03	1.0000	161.0	0.80%	212.4	1.07%
Unknown5/Drosophila-Promoters/Homer	GCTGATAASV	1e0	-2.796e-03	1.0000	890.0	4.45%	1003.8	5.04%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-2.762e-03	1.0000	114.0	0.57%	158.7	0.80%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e0	-2.648e-03	1.0000	729.0	3.65%	833.3	4.18%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e0	-2.529e-03	1.0000	1028.0	5.14%	1150.2	5.77%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e0	-2.389e-03	1.0000	2448.0	12.24%	2625.9	13.18%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-2.319e-03	1.0000	1694.0	8.47%	1847.5	9.27%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e0	-2.075e-03	1.0000	1247.0	6.24%	1383.8	6.95%
TCP1(TCP)/col-TCP1-DAP-Seq(GSE60143)/Homer	GGGGGCCCMMCN	1e0	-1.926e-03	1.0000	319.0	1.59%	394.0	1.98%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-1.871e-03	1.0000	768.0	3.84%	879.7	4.42%
AT5G60130(ABI3VP1)/col-AT5G60130-DAP-Seq(GSE60143)/Homer	WTTYTAAGVAAA	1e0	-1.676e-03	1.0000	2946.0	14.73%	3144.7	15.78%
LBD19(LOBAS2)/colamp-LBD19-DAP-Seq(GSE60143)/Homer	CCKGAAWTTCMGGAW	1e0	-1.621e-03	1.0000	2474.0	12.37%	2660.1	13.35%
At1g75490(AP2EREBP)/colamp-At1g75490-DAP-Seq(GSE60143)/Homer	CACCGMCT	1e0	-1.616e-03	1.0000	2371.0	11.86%	2554.5	12.82%
LBD18(LOBAS2)/colamp-LBD18-DAP-Seq(GSE60143)/Homer	CKGAWWTTCHGS	1e0	-1.466e-03	1.0000	3510.0	17.55%	3724.0	18.69%
Initiator/Drosophila-Promoters/Homer	NTCAGTYG	1e0	-1.418e-03	1.0000	3247.0	16.23%	3456.9	17.35%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-1.339e-03	1.0000	888.0	4.44%	1011.4	5.08%
MYB73(MYB)/col-MYB73-DAP-Seq(GSE60143)/Homer	NNNNHAACNGHHDHN	1e0	-1.336e-03	1.0000	3023.0	15.12%	3229.0	16.21%
SOC1(MADS)/Seedling-SOC1-ChIP-Seq(GSE45846)/Homer	TWCCAWWTWTGG	1e0	-1.278e-03	1.0000	463.0	2.31%	555.2	2.79%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-1.192e-03	1.0000	1012.0	5.06%	1144.1	5.74%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-1.084e-03	1.0000	1041.0	5.21%	1176.3	5.90%
At1g49010(MYBrelated)/col-At1g49010-DAP-Seq(GSE60143)/Homer	RGATAASNTT	1e0	-9.680e-04	1.0000	3137.0	15.68%	3352.9	16.83%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e0	-9.040e-04	1.0000	2172.0	10.86%	2361.0	11.85%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e0	-8.930e-04	1.0000	1972.0	9.86%	2153.4	10.81%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-8.760e-04	1.0000	693.0	3.46%	808.7	4.06%
PIF4(bHLH)/Seedling-PIF4-ChIP-Seq(GSE35315)/Homer	NNBCACGTGN	1e0	-8.600e-04	1.0000	2145.0	10.72%	2333.2	11.71%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-8.420e-04	1.0000	769.0	3.84%	890.1	4.47%
MYB70(MYB)/col-MYB70-DAP-Seq(GSE60143)/Homer	WTAACNGTTA	1e0	-7.240e-04	1.0000	2311.0	11.55%	2508.3	12.59%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e0	-6.450e-04	1.0000	6884.0	34.42%	7163.3	35.95%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e0	-5.960e-04	1.0000	391.0	1.96%	483.6	2.43%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-4.740e-04	1.0000	2706.0	13.53%	2925.0	14.68%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-4.690e-04	1.0000	1427.0	7.13%	1595.4	8.01%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-4.500e-04	1.0000	1664.0	8.32%	1844.1	9.26%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e0	-3.940e-04	1.0000	451.0	2.25%	553.7	2.78%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e0	-3.720e-04	1.0000	221.0	1.10%	295.7	1.48%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e0	-3.550e-04	1.0000	4940.0	24.70%	5214.8	26.17%
MYB101(MYB)/colamp-MYB101-DAP-Seq(GSE60143)/Homer	TAACNRMY	1e0	-3.450e-04	1.0000	2963.0	14.82%	3195.5	16.04%
TRP2(MYBrelated)/colamp-TRP2-DAP-Seq(GSE60143)/Homer	TAAACCCT	1e0	-3.370e-04	1.0000	180.0	0.90%	248.6	1.25%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-2.330e-04	1.0000	2314.0	11.57%	2532.5	12.71%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-2.110e-04	1.0000	1507.0	7.54%	1691.3	8.49%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-2.030e-04	1.0000	509.0	2.54%	623.7	3.13%
Pho4(bHLH)/Yeast-Pho4-ChIP-Seq(GSE29506)/Homer	AAGCACGTGBGD	1e0	-1.820e-04	1.0000	223.0	1.11%	302.2	1.52%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	-1.210e-04	1.0000	818.0	4.09%	965.5	4.85%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e0	-1.200e-04	1.0000	169.0	0.84%	241.3	1.21%
DEL2(E2FDP)/col-DEL2-DAP-Seq(GSE60143)/Homer	WTTTCSCGCC	1e0	-1.150e-04	1.0000	536.0	2.68%	658.2	3.30%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e0	-9.600e-05	1.0000	2407.0	12.04%	2644.2	13.27%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-8.200e-05	1.0000	404.0	2.02%	514.7	2.58%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e0	-6.900e-05	1.0000	2274.0	11.37%	2511.7	12.61%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e0	-6.600e-05	1.0000	2115.0	10.57%	2346.7	11.78%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e0	-3.500e-05	1.0000	1296.0	6.48%	1492.8	7.49%
ASL18(LOBAS2)/colamp-ASL18-DAP-Seq(GSE60143)/Homer	CCGGAAAWTCMGGAR	1e0	-2.200e-05	1.0000	2360.0	11.80%	2619.5	13.15%
At5g05790(MYBrelated)/col-At5g05790-DAP-Seq(GSE60143)/Homer	AYCTTATC	1e0	-2.000e-05	1.0000	1808.0	9.04%	2042.0	10.25%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-1.900e-05	1.0000	2271.0	11.36%	2528.6	12.69%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-1.500e-05	1.0000	3385.0	16.93%	3689.5	18.52%
At3g11280(MYBrelated)/col-At3g11280-DAP-Seq(GSE60143)/Homer	GATAAGRT	1e0	-1.200e-05	1.0000	1708.0	8.54%	1943.2	9.75%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e0	-6.000e-06	1.0000	3516.0	17.58%	3840.4	19.28%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-5.000e-06	1.0000	385.0	1.93%	513.6	2.58%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-3.000e-06	1.0000	508.0	2.54%	657.8	3.30%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e0	-3.000e-06	1.0000	1161.0	5.80%	1376.3	6.91%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-2.000e-06	1.0000	3080.0	15.40%	3403.5	17.08%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e0	-2.000e-06	1.0000	3611.0	18.05%	3960.4	19.88%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e0	-2.000e-06	1.0000	2150.0	10.75%	2437.5	12.23%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e0	-1.000e-06	1.0000	2582.0	12.91%	2893.2	14.52%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e0	-1.000e-06	1.0000	3361.0	16.80%	3707.2	18.61%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-1.000e-06	1.0000	1678.0	8.39%	1942.1	9.75%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-1.000e-06	1.0000	2300.0	11.50%	2604.3	13.07%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-1.000e-06	1.0000	643.0	3.21%	822.7	4.13%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-0.000e+00	1.0000	197.0	0.98%	305.5	1.53%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-0.000e+00	1.0000	974.0	4.87%	1194.0	5.99%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e0	-0.000e+00	1.0000	3541.0	17.71%	3914.4	19.65%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e0	-0.000e+00	1.0000	3353.0	16.77%	3721.1	18.68%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e0	-0.000e+00	1.0000	3797.0	18.98%	4186.2	21.01%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-0.000e+00	1.0000	1950.0	9.75%	2254.2	11.31%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e0	-0.000e+00	1.0000	4315.0	21.57%	4726.5	23.72%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e0	-0.000e+00	1.0000	1489.0	7.45%	1763.0	8.85%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e0	-0.000e+00	1.0000	3670.0	18.35%	4063.2	20.39%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e0	-0.000e+00	1.0000	4727.0	23.64%	5174.7	25.97%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e0	-0.000e+00	1.0000	5108.0	25.54%	5578.2	28.00%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-0.000e+00	1.0000	438.0	2.19%	614.5	3.08%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-0.000e+00	1.0000	2089.0	10.45%	2436.8	12.23%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	-0.000e+00	1.0000	650.0	3.25%	862.1	4.33%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	-0.000e+00	1.0000	809.0	4.04%	1049.5	5.27%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)	NNAYTTCCTGHN	1e0	-0.000e+00	1.0000	3355.0	16.78%	3787.2	19.01%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-0.000e+00	1.0000	1427.0	7.13%	1736.8	8.72%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e0	-0.000e+00	1.0000	3881.0	19.41%	4338.7	21.78%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e0	-0.000e+00	1.0000	3087.0	15.43%	3517.6	17.66%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-0.000e+00	1.0000	258.0	1.29%	410.0	2.06%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e0	-0.000e+00	1.0000	945.0	4.72%	1214.1	6.09%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e0	-0.000e+00	1.0000	1166.0	5.83%	1460.2	7.33%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-0.000e+00	1.0000	1084.0	5.42%	1369.6	6.87%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e0	-0.000e+00	1.0000	959.0	4.79%	1235.7	6.20%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-0.000e+00	1.0000	1011.0	5.05%	1304.6	6.55%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e0	-0.000e+00	1.0000	1615.0	8.08%	1971.4	9.89%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-0.000e+00	1.0000	1507.0	7.54%	1886.4	9.47%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-0.000e+00	1.0000	1013.0	5.07%	1320.0	6.63%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e0	-0.000e+00	1.0000	2600.0	13.00%	3050.0	15.31%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-0.000e+00	1.0000	1195.0	5.97%	1559.3	7.83%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e0	-0.000e+00	1.0000	2185.0	10.93%	2671.8	13.41%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-0.000e+00	1.0000	608.0	3.04%	928.8	4.66%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e0	-0.000e+00	1.0000	2124.0	10.62%	2557.3	12.84%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	-0.000e+00	1.0000	1076.0	5.38%	1411.8	7.09%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-0.000e+00	1.0000	3950.0	19.75%	4533.3	22.75%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e0	-0.000e+00	1.0000	3643.0	18.21%	4246.4	21.31%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e0	-0.000e+00	1.0000	4688.0	23.44%	5297.8	26.59%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e0	-0.000e+00	1.0000	2040.0	10.20%	2502.1	12.56%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-0.000e+00	1.0000	1034.0	5.17%	1413.8	7.10%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-0.000e+00	1.0000	604.0	3.02%	918.7	4.61%
AARE(HLH)/mES-cMyc-ChIP-Seq/Homer	GATTGCATCA	1e0	-0.000e+00	1.0000	546.0	2.73%	781.5	3.92%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e0	-0.000e+00	1.0000	3045.0	15.22%	3603.9	18.09%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-0.000e+00	1.0000	233.0	1.17%	492.9	2.47%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e0	-0.000e+00	1.0000	2070.0	10.35%	2590.7	13.00%
WRKY7(WRKY)/colamp-WRKY7-DAP-Seq(GSE60143)/Homer	AAAAGTCAACGSHWD	1e0	-0.000e+00	1.0000	0.0	0.00%	2.1	0.01%
 Ik-1	NHTTGGGAATRCC	1e0	0.000e+00	1.0000	20000.0	100.00%	19923.7	100.00%
Unknown2/Arabidopsis-Promoters/Homer	AAACGACGTCGTTTT	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%