Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 20000)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 19938)	% of Background Sequences with Motif
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e-152	-3.507e+02	0.0000	2418.0	12.09%	967.0	4.85%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e-92	-2.136e+02	0.0000	675.0	3.38%	125.9	0.63%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e-92	-2.136e+02	0.0000	675.0	3.38%	125.9	0.63%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e-78	-1.797e+02	0.0000	541.0	2.71%	93.0	0.47%
dHNF4(NR)/Fly-HNF4-ChIP-Seq(GSE73675)/Homer	GGTCCAAAGTCCAMT	1e-73	-1.701e+02	0.0000	592.0	2.96%	125.9	0.63%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-66	-1.536e+02	0.0000	3572.0	17.86%	2335.5	11.72%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-66	-1.527e+02	0.0000	3043.0	15.21%	1901.1	9.54%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e-63	-1.459e+02	0.0000	3006.0	15.03%	1894.2	9.51%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-56	-1.291e+02	0.0000	2826.0	14.13%	1806.3	9.07%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e-49	-1.135e+02	0.0000	268.0	1.34%	29.5	0.15%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e-45	-1.046e+02	0.0000	5102.0	25.51%	3898.8	19.57%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e-45	-1.042e+02	0.0000	985.0	4.92%	458.7	2.30%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-45	-1.037e+02	0.0000	2607.0	13.04%	1721.1	8.64%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e-42	-9.720e+01	0.0000	553.0	2.77%	189.9	0.95%
PHA-4(Forkhead)/cElegans-Embryos-PHA4-ChIP-Seq(modEncode)/Homer	KTGTTTGC	1e-40	-9.357e+01	0.0000	6230.0	31.15%	5002.9	25.11%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e-40	-9.289e+01	0.0000	549.0	2.74%	193.4	0.97%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e-34	-7.950e+01	0.0000	1204.0	6.02%	680.6	3.42%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e-29	-6.783e+01	0.0000	2598.0	12.99%	1874.6	9.41%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e-29	-6.722e+01	0.0000	2244.0	11.22%	1573.2	7.90%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e-25	-5.917e+01	0.0000	7621.0	38.10%	6581.6	33.04%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e-22	-5.087e+01	0.0000	2018.0	10.09%	1461.2	7.33%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e-21	-4.986e+01	0.0000	2187.0	10.94%	1613.1	8.10%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e-21	-4.964e+01	0.0000	1114.0	5.57%	709.3	3.56%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e-19	-4.547e+01	0.0000	3903.0	19.52%	3186.9	16.00%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e-19	-4.496e+01	0.0000	711.0	3.55%	408.7	2.05%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e-19	-4.477e+01	0.0000	1601.0	8.00%	1136.0	5.70%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e-19	-4.451e+01	0.0000	2452.0	12.26%	1878.3	9.43%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-19	-4.447e+01	0.0000	2012.0	10.06%	1491.5	7.49%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e-19	-4.431e+01	0.0000	3692.0	18.46%	3001.3	15.07%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e-18	-4.213e+01	0.0000	2090.0	10.45%	1573.6	7.90%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e-17	-4.051e+01	0.0000	2039.0	10.20%	1538.5	7.72%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-16	-3.710e+01	0.0000	1266.0	6.33%	889.8	4.47%
GATA15(C2C2gata)/col-GATA15-DAP-Seq(GSE60143)/Homer	KATGATCA	1e-16	-3.688e+01	0.0000	2080.0	10.40%	1597.5	8.02%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e-14	-3.451e+01	0.0000	3844.0	19.22%	3224.7	16.19%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-14	-3.356e+01	0.0000	1667.0	8.33%	1254.1	6.29%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e-14	-3.332e+01	0.0000	1687.0	8.43%	1273.8	6.39%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e-13	-3.062e+01	0.0000	2139.0	10.70%	1693.6	8.50%
WRKY55(WRKY)/col-WRKY55-DAP-Seq(GSE60143)/Homer	NCGTTGACTT	1e-13	-3.018e+01	0.0000	2033.0	10.17%	1601.6	8.04%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e-12	-2.982e+01	0.0000	1269.0	6.35%	930.6	4.67%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e-12	-2.940e+01	0.0000	2370.0	11.85%	1911.6	9.60%
GATA20(C2C2gata)/colamp-GATA20-DAP-Seq(GSE60143)/Homer	TNGATCNDNM	1e-12	-2.789e+01	0.0000	2724.0	13.62%	2247.7	11.28%
WRKY25(WRKY)/colamp-WRKY25-DAP-Seq(GSE60143)/Homer	NNNNHRGTCAAMNNN	1e-12	-2.773e+01	0.0000	1955.0	9.78%	1549.4	7.78%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e-11	-2.602e+01	0.0000	410.0	2.05%	237.3	1.19%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e-11	-2.584e+01	0.0000	1165.0	5.83%	863.6	4.34%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e-10	-2.419e+01	0.0000	2428.0	12.14%	2008.4	10.08%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e-10	-2.335e+01	0.0000	1709.0	8.54%	1361.8	6.84%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e-10	-2.317e+01	0.0000	330.0	1.65%	185.3	0.93%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e-10	-2.316e+01	0.0000	523.0	2.61%	336.2	1.69%
WRKY71(WRKY)/col-WRKY71-DAP-Seq(GSE60143)/Homer	CKTTGACYWW	1e-9	-2.263e+01	0.0000	1436.0	7.18%	1122.6	5.64%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e-9	-2.252e+01	0.0000	381.0	1.91%	226.3	1.14%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e-9	-2.249e+01	0.0000	322.0	1.61%	181.3	0.91%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e-9	-2.185e+01	0.0000	1005.0	5.03%	748.8	3.76%
WRKY28(WRKY)/col-WRKY28-DAP-Seq(GSE60143)/Homer	BGTTGACTWH	1e-9	-2.144e+01	0.0000	2257.0	11.29%	1876.5	9.42%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e-9	-2.143e+01	0.0000	927.0	4.63%	683.7	3.43%
WRKY50(WRKY)/col-WRKY50-DAP-Seq(GSE60143)/Homer	NNTTGACTWNNGNNN	1e-9	-2.141e+01	0.0000	1660.0	8.30%	1332.1	6.69%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e-9	-2.101e+01	0.0000	245.0	1.23%	128.2	0.64%
WRKY15(WRKY)/col-WRKY15-DAP-Seq(GSE60143)/Homer	VGTTGACTWW	1e-8	-1.988e+01	0.0000	1741.0	8.71%	1418.8	7.12%
WRKY6(WRKY)/colamp-WRKY6-DAP-Seq(GSE60143)/Homer	NCGTTGACTWWD	1e-8	-1.954e+01	0.0000	1558.0	7.79%	1255.4	6.30%
E-box/Arabidopsis-Promoters/Homer	GCCACGTG	1e-8	-1.910e+01	0.0000	1023.0	5.12%	781.5	3.92%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e-8	-1.895e+01	0.0000	1567.0	7.83%	1268.0	6.37%
WRKY18(WRKY)/col-WRKY18-DAP-Seq(GSE60143)/Homer	NNNTTGACYWNNNNN	1e-8	-1.872e+01	0.0000	2688.0	13.44%	2303.2	11.56%
WRKY29(WRKY)/colamp-WRKY29-DAP-Seq(GSE60143)/Homer	MGTTGACTTT	1e-8	-1.845e+01	0.0000	1735.0	8.67%	1425.0	7.15%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e-7	-1.791e+01	0.0000	1597.0	7.99%	1304.9	6.55%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e-7	-1.790e+01	0.0000	1397.0	6.98%	1123.8	5.64%
WRKY75(WRKY)/col-WRKY75-DAP-Seq(GSE60143)/Homer	CGTTGACTWW	1e-7	-1.776e+01	0.0000	1691.0	8.46%	1391.0	6.98%
Cbf1(bHLH)/Yeast-Cbf1-ChIP-Seq(GSE29506)/Homer	TCACGTGAYH	1e-7	-1.759e+01	0.0000	853.0	4.26%	642.5	3.23%
WRKY31(WRKY)/colamp-WRKY31-DAP-Seq(GSE60143)/Homer	NCGTTGACTWWK	1e-7	-1.721e+01	0.0000	1292.0	6.46%	1034.1	5.19%
WRKY24(WRKY)/colamp-WRKY24-DAP-Seq(GSE60143)/Homer	CGTTGACTWW	1e-7	-1.667e+01	0.0000	1496.0	7.48%	1223.5	6.14%
SPCH(bHLH)/Seedling-SPCH-ChIP-Seq(GSE57497)/Homer	WNBCACGTGA	1e-7	-1.639e+01	0.0000	2428.0	12.14%	2086.3	10.47%
WRKY33(WRKY)/col-WRKY33-DAP-Seq(GSE60143)/Homer	CGTTGACYAW	1e-7	-1.637e+01	0.0000	1394.0	6.97%	1133.3	5.69%
WRKY20(WRKY)/col-WRKY20-DAP-Seq(GSE60143)/Homer	CKTTGACYWD	1e-6	-1.579e+01	0.0000	1287.0	6.44%	1041.1	5.23%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e-6	-1.575e+01	0.0000	233.0	1.17%	134.9	0.68%
ATHB20(Homeobox)/colamp-ATHB20-DAP-Seq(GSE60143)/Homer	CAATHATT	1e-6	-1.564e+01	0.0000	635.0	3.17%	465.6	2.34%
HY5(bZIP)/colamp-HY5-DAP-Seq(GSE60143)/Homer	RRTSACGTSD	1e-6	-1.439e+01	0.0000	1642.0	8.21%	1378.6	6.92%
WRKY14(WRKY)/colamp-WRKY14-DAP-Seq(GSE60143)/Homer	NCGTTGACTTTN	1e-6	-1.438e+01	0.0000	874.0	4.37%	682.1	3.42%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e-6	-1.431e+01	0.0000	2136.0	10.68%	1837.9	9.23%
WRKY27(WRKY)/colamp-WRKY27-DAP-Seq(GSE60143)/Homer	NHGTTGACYTWD	1e-6	-1.414e+01	0.0000	1511.0	7.56%	1260.4	6.33%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-5	-1.374e+01	0.0000	1123.0	5.62%	910.6	4.57%
ATHB18(Homeobox)/colamp-ATHB18-DAP-Seq(GSE60143)/Homer	YCAATSATTG	1e-5	-1.346e+01	0.0000	310.0	1.55%	203.4	1.02%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-5	-1.342e+01	0.0000	1319.0	6.59%	1091.9	5.48%
WRKY65(WRKY)/colamp-WRKY65-DAP-Seq(GSE60143)/Homer	AWWWAGTCAACG	1e-5	-1.327e+01	0.0000	794.0	3.97%	619.3	3.11%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e-5	-1.318e+01	0.0000	800.0	4.00%	625.8	3.14%
WRKY3(WRKY)/col-WRKY3-DAP-Seq(GSE60143)/Homer	NCKTTGACYDDN	1e-5	-1.298e+01	0.0000	1076.0	5.38%	874.4	4.39%
WRKY43(WRKY)/colamp-WRKY43-DAP-Seq(GSE60143)/Homer	NCGTTGACTTTT	1e-5	-1.274e+01	0.0000	681.0	3.40%	523.5	2.63%
BIM3(bHLH)/col-BIM3-DAP-Seq(GSE60143)/Homer	TWVTCACGTGAB	1e-5	-1.271e+01	0.0000	412.0	2.06%	291.7	1.46%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e-5	-1.269e+01	0.0000	3072.0	15.36%	2741.7	13.76%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-5	-1.260e+01	0.0000	965.0	4.83%	777.2	3.90%
BIM1(bHLH)/colamp-BIM1-DAP-Seq(GSE60143)/Homer	NNNNNNVTCACGTGM	1e-5	-1.246e+01	0.0000	317.0	1.58%	213.4	1.07%
NLP7(RWPRK)/col-NLP7-DAP-Seq(GSE60143)/Homer	TGRCCYTTCR	1e-5	-1.230e+01	0.0000	3350.0	16.75%	3012.3	15.12%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e-5	-1.215e+01	0.0001	135.0	0.68%	71.1	0.36%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-5	-1.212e+01	0.0001	2914.0	14.57%	2599.2	13.05%
ATAF1(NAC)/col-ATAF1-DAP-Seq(GSE60143)/Homer	YACGTMAY	1e-5	-1.176e+01	0.0001	3849.0	19.25%	3499.5	17.57%
Dorsal(RHD)/Embryo-dl-ChIP-Seq(GSE65441)/Homer	GGGAAAAMCCCG	1e-5	-1.164e+01	0.0001	409.0	2.04%	295.0	1.48%
FEA4(bZIP)/Corn-FEA4-ChIP-Seq(GSE61954)/Homer	TGACGTCACS	1e-4	-1.150e+01	0.0001	2536.0	12.68%	2249.1	11.29%
WRKY30(WRKY)/colamp-WRKY30-DAP-Seq(GSE60143)/Homer	CGTTGACTTN	1e-4	-1.130e+01	0.0001	415.0	2.08%	301.6	1.51%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e-4	-1.121e+01	0.0001	3888.0	19.44%	3546.3	17.80%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e-4	-1.116e+01	0.0001	853.0	4.26%	688.2	3.45%
HAT2(Homeobox)/colamp-HAT2-DAP-Seq(GSE60143)/Homer	CYAATSATTR	1e-4	-1.090e+01	0.0002	1332.0	6.66%	1128.6	5.67%
AT3G42860(zfGRF)/col-AT3G42860-DAP-Seq(GSE60143)/Homer	CGTTGACTTN	1e-4	-1.089e+01	0.0002	396.0	1.98%	287.6	1.44%
AREB3(bZIP)/col-AREB3-DAP-Seq(GSE60143)/Homer	NKGMCACGTGDCMNN	1e-4	-1.068e+01	0.0002	607.0	3.03%	472.5	2.37%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e-4	-1.059e+01	0.0002	621.0	3.10%	485.2	2.44%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e-4	-1.056e+01	0.0002	555.0	2.77%	427.6	2.15%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e-4	-1.055e+01	0.0002	1225.0	6.12%	1033.9	5.19%
GBF6(bZIP)/colamp-GBF6-DAP-Seq(GSE60143)/Homer	WWTGMCACGTCABCW	1e-4	-1.049e+01	0.0002	419.0	2.10%	309.1	1.55%
ABI5(bZIP)/col-ABI5-DAP-Seq(GSE60143)/Homer	GCCACGTG	1e-4	-1.039e+01	0.0003	708.0	3.54%	564.1	2.83%
WRKY42(WRKY)/colamp-WRKY42-DAP-Seq(GSE60143)/Homer	NAAAGTCAACGN	1e-4	-1.034e+01	0.0003	602.0	3.01%	470.5	2.36%
At5g66730(C2H2)/colamp-At5g66730-DAP-Seq(GSE60143)/Homer	TTTGTCKTTTTK	1e-4	-1.007e+01	0.0004	408.0	2.04%	302.2	1.52%
WRKY11(WRKY)/col-WRKY11-DAP-Seq(GSE60143)/Homer	SCGTTGACTTTN	1e-4	-9.695e+00	0.0005	217.0	1.08%	143.3	0.72%
WIP5(C2H2)/colamp-WIP5-DAP-Seq(GSE60143)/Homer	TDTTCTCMAGGT	1e-4	-9.687e+00	0.0005	1512.0	7.56%	1309.7	6.57%
RBFox2(?)/Heart-RBFox2-CLIP-Seq(GSE57926)/Homer	TGCATGCA	1e-4	-9.661e+00	0.0005	3233.0	16.16%	2943.4	14.77%
TGA6(bZIP)/colamp-TGA6-DAP-Seq(GSE60143)/Homer	TGACGTCABC	1e-4	-9.647e+00	0.0005	1474.0	7.37%	1274.8	6.40%
ATHB7(Homeobox)/col-ATHB7-DAP-Seq(GSE60143)/Homer	AATGATTG	1e-4	-9.570e+00	0.0006	1151.0	5.75%	975.2	4.90%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-4	-9.544e+00	0.0006	215.0	1.07%	142.9	0.72%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e-4	-9.495e+00	0.0006	1595.0	7.98%	1390.0	6.98%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-4	-9.327e+00	0.0007	2028.0	10.14%	1799.4	9.03%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e-4	-9.244e+00	0.0008	661.0	3.31%	531.4	2.67%
At4g36780(BZR)/col-At4g36780-DAP-Seq(GSE60143)/Homer	NNNNNNCACGTGNNN	1e-3	-9.186e+00	0.0008	517.0	2.58%	403.1	2.02%
WRKY26(WRKY)/colamp-WRKY26-DAP-Seq(GSE60143)/Homer	CGTTGACTWDKN	1e-3	-9.100e+00	0.0009	832.0	4.16%	687.3	3.45%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e-3	-9.081e+00	0.0009	1473.0	7.36%	1280.7	6.43%
TGA1(bZIP)/colamp-TGA1-DAP-Seq(GSE60143)/Homer	TGACGTCAKC	1e-3	-9.032e+00	0.0009	1122.0	5.61%	954.2	4.79%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e-3	-8.997e+00	0.0009	412.0	2.06%	312.1	1.57%
PIF5ox(bHLH)/Arabidopsis-PIF5ox-ChIP-Seq(GSE35062)/Homer	BCACGTGVDN	1e-3	-8.969e+00	0.0010	2227.0	11.13%	1993.3	10.01%
ATHB15(HB)/col-ATHB15-DAP-Seq(GSE60143)/Homer	GYAATSATTA	1e-3	-8.937e+00	0.0010	524.0	2.62%	411.8	2.07%
SUT1?/SacCer-Promoters/Homer	CCCCGCGC	1e-3	-8.930e+00	0.0010	11126.0	55.63%	10719.6	53.81%
ATHB5(HB)/colamp-ATHB5-DAP-Seq(GSE60143)/Homer	AATGATTG	1e-3	-8.899e+00	0.0010	1385.0	6.93%	1200.4	6.03%
Zelda(Zf)/Embryo-zld-ChIP-Seq(GSE65441)/Homer	KBCTACCTGW	1e-3	-8.766e+00	0.0011	400.0	2.00%	303.5	1.52%
ATHB6(Homeobox)/col-ATHB6-DAP-Seq(GSE60143)/Homer	AATGATTG	1e-3	-8.766e+00	0.0011	1845.0	9.22%	1634.3	8.20%
bHLH74(bHLH)/col-bHLH74-DAP-Seq(GSE60143)/Homer	DRATCACGTGAB	1e-3	-8.762e+00	0.0011	554.0	2.77%	439.8	2.21%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-3	-8.654e+00	0.0012	2852.0	14.26%	2595.8	13.03%
SPL1(SBP)/colamp-SPL1-DAP-Seq(GSE60143)/Homer	HYGTACDTWH	1e-3	-8.618e+00	0.0013	2257.0	11.29%	2027.4	10.18%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e-3	-8.607e+00	0.0013	528.0	2.64%	417.2	2.09%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-3	-8.573e+00	0.0013	1401.0	7.00%	1220.0	6.12%
AtIDD11(C2H2)/colamp-AtIDD11-DAP-Seq(GSE60143)/Homer	TTTGTCGTTT	1e-3	-8.368e+00	0.0016	517.0	2.58%	410.0	2.06%
Trl(Zf)/S2-GAGAfactor-ChIP-Seq(GSE40646)/Homer	RGAGAGAG	1e-3	-8.234e+00	0.0018	4323.0	21.62%	4024.1	20.20%
bZIP68(bZIP)/col-bZIP68-DAP-Seq(GSE60143)/Homer	WGCCACGTGK	1e-3	-8.142e+00	0.0020	612.0	3.06%	496.1	2.49%
BIM2(bHLH)/col-BIM2-DAP-Seq(GSE60143)/Homer	NNNNCACGTGNN	1e-3	-7.967e+00	0.0024	1839.0	9.20%	1640.7	8.24%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e-3	-7.931e+00	0.0024	447.0	2.23%	350.0	1.76%
ATHB34(ZFHD)/colamp-ATHB34-DAP-Seq(GSE60143)/Homer	TRATTARS	1e-3	-7.844e+00	0.0026	1188.0	5.94%	1029.2	5.17%
bZIP28(bZIP)/col-bZIP28-DAP-Seq(GSE60143)/Homer	TGCCACGTSABH	1e-3	-7.687e+00	0.0030	491.0	2.46%	391.4	1.96%
bZIP3(bZIP)/col-bZIP3-DAP-Seq(GSE60143)/Homer	DWKNHSACGTGGCAD	1e-3	-7.607e+00	0.0033	957.0	4.78%	817.7	4.10%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e-3	-7.582e+00	0.0033	434.0	2.17%	341.2	1.71%
ATHB6(Homeobox)/Arabidopsis-HB6-ChIP-Seq(GSE80564)/Homer	CAATNATTBN	1e-3	-7.573e+00	0.0033	1118.0	5.59%	967.4	4.86%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e-3	-7.546e+00	0.0034	1808.0	9.04%	1617.4	8.12%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e-3	-7.537e+00	0.0034	512.0	2.56%	411.0	2.06%
PHV(HB)/col-PHV-DAP-Seq(GSE60143)/Homer	RTAATSATTA	1e-3	-7.430e+00	0.0038	658.0	3.29%	544.5	2.73%
ABF1(bZIP)/Arabidopsis-ABF1-ChIP-Seq(GSE80564)/Homer	CACGTGGC	1e-3	-7.315e+00	0.0042	1645.0	8.22%	1466.6	7.36%
ATHB24(ZFHD)/colamp-ATHB24-DAP-Seq(GSE60143)/Homer	TAATTAAS	1e-3	-7.242e+00	0.0045	1119.0	5.59%	972.3	4.88%
TGA4(bZIP)/colamp-TGA4-DAP-Seq(GSE60143)/Homer	RTGACGTCAKCW	1e-3	-7.240e+00	0.0045	838.0	4.19%	711.1	3.57%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-3	-7.191e+00	0.0047	1144.0	5.72%	996.9	5.00%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e-3	-7.154e+00	0.0048	544.0	2.72%	443.2	2.22%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e-3	-7.126e+00	0.0049	1021.0	5.10%	882.1	4.43%
At1g76110(ARID)/colamp-At1g76110-DAP-Seq(GSE60143)/Homer	ATTTAATG	1e-3	-7.079e+00	0.0051	733.0	3.67%	616.6	3.10%
EMB1789(C3H)/col-EMB1789-DAP-Seq(GSE60143)/Homer	TWTTTACCGYND	1e-3	-7.049e+00	0.0052	575.0	2.88%	472.4	2.37%
bZIP16(bZIP)/colamp-bZIP16-DAP-Seq(GSE60143)/Homer	TGCCACGTGD	1e-3	-6.989e+00	0.0055	467.0	2.33%	375.9	1.89%
HAT1(Homeobox)/col-HAT1-DAP-Seq(GSE60143)/Homer	SCAATCATTGNN	1e-3	-6.953e+00	0.0057	279.0	1.40%	209.8	1.05%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-3	-6.936e+00	0.0057	2080.0	10.40%	1886.0	9.47%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e-3	-6.918e+00	0.0058	668.0	3.34%	558.9	2.81%
WRKY40(WRKY)/colamp-WRKY40-DAP-Seq(GSE60143)/Homer	AHWAGTCAAC	1e-3	-6.909e+00	0.0058	957.0	4.78%	825.4	4.14%
AT5G47660(Trihelix)/colamp-AT5G47660-DAP-Seq(GSE60143)/Homer	AWTTTTACCG	1e-2	-6.720e+00	0.0070	2263.0	11.31%	2065.1	10.37%
WUS1(Homeobox)/colamp-WUS1-DAP-Seq(GSE60143)/Homer	CAWTCATTCA	1e-2	-6.523e+00	0.0085	743.0	3.72%	631.2	3.17%
bHLH34(bHLH)/colamp-bHLH34-DAP-Seq(GSE60143)/Homer	HGWGRHWGACACGTG	1e-2	-6.498e+00	0.0086	622.0	3.11%	520.1	2.61%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-2	-6.486e+00	0.0087	1831.0	9.16%	1656.1	8.31%
At1g78700(BZR)/col-At1g78700-DAP-Seq(GSE60143)/Homer	NNNNCACGTGNNNNN	1e-2	-6.455e+00	0.0089	471.0	2.35%	383.0	1.92%
HDG1(Homeobox)/col100-HDG1-DAP-Seq(GSE60143)/Homer	DDYAATTAATGH	1e-2	-6.447e+00	0.0089	547.0	2.73%	452.4	2.27%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e-2	-6.191e+00	0.0114	302.0	1.51%	234.9	1.18%
At4g32800(AP2EREBP)/colamp-At4g32800-DAP-Seq(GSE60143)/Homer	DYCACCGACAHWWWH	1e-2	-6.190e+00	0.0114	92.0	0.46%	56.7	0.28%
Pho2(bHLH)/Yeast-Pho2-ChIP-Seq(GSE29506)/Homer	CCCACGTGCT	1e-2	-6.148e+00	0.0118	758.0	3.79%	649.3	3.26%
GT2(Trihelix)/colamp-GT2-DAP-Seq(GSE60143)/Homer	AMGGTAAAWWWN	1e-2	-6.019e+00	0.0133	1552.0	7.76%	1398.3	7.02%
WRKY47(WRKY)/colamp-WRKY47-DAP-Seq(GSE60143)/Homer	WAAGTCAACGBT	1e-2	-6.016e+00	0.0133	377.0	1.88%	302.8	1.52%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e-2	-5.870e+00	0.0153	2295.0	11.47%	2112.4	10.60%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e-2	-5.748e+00	0.0172	917.0	4.58%	802.9	4.03%
GTL1(Trihelix)/colamp-GTL1-DAP-Seq(GSE60143)/Homer	WWTTTACCKY	1e-2	-5.717e+00	0.0176	1639.0	8.20%	1486.6	7.46%
NGA4(ABI3VP1)/col-NGA4-DAP-Seq(GSE60143)/Homer	TKNTCAGGTG	1e-2	-5.688e+00	0.0180	3371.0	16.86%	3157.8	15.85%
GATA4(C2C2gata)/col-GATA4-DAP-Seq(GSE60143)/Homer	DDWTYAGATCTR	1e-2	-5.683e+00	0.0180	807.0	4.04%	701.0	3.52%
ZML2(C2C2gata)/col-ZML2-DAP-Seq(GSE60143)/Homer	CATCATCATC	1e-2	-5.628e+00	0.0189	250.0	1.25%	192.6	0.97%
ATHB23(ZFHD)/col-ATHB23-DAP-Seq(GSE60143)/Homer	HTAATTARNN	1e-2	-5.608e+00	0.0192	1363.0	6.82%	1225.6	6.15%
TGA5(bZIP)/col-TGA5-DAP-Seq(GSE60143)/Homer	NNGATGACGTCATCN	1e-2	-5.529e+00	0.0207	429.0	2.15%	353.3	1.77%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e-2	-5.490e+00	0.0214	614.0	3.07%	524.0	2.63%
bZIP44(bZIP)/colamp-bZIP44-DAP-Seq(GSE60143)/Homer	NDTGCCACGTCAGCH	1e-2	-5.489e+00	0.0214	75.0	0.38%	45.3	0.23%
ABF2(bZIP)/col-ABF2-DAP-Seq(GSE60143)/Homer	KGMCACGTGDCMHHH	1e-2	-5.478e+00	0.0214	423.0	2.11%	348.6	1.75%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e-2	-5.440e+00	0.0221	838.0	4.19%	732.3	3.68%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e-2	-5.420e+00	0.0224	559.0	2.79%	473.2	2.38%
bZIP53(bZIP)/colamp-bZIP53-DAP-Seq(GSE60143)/Homer	NDNHSACGTGKMNNN	1e-2	-5.369e+00	0.0235	528.0	2.64%	445.6	2.24%
LMI1(HB)/colamp-LMI1-DAP-Seq(GSE60143)/Homer	AATTATTG	1e-2	-5.361e+00	0.0235	870.0	4.35%	763.1	3.83%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e-2	-5.325e+00	0.0243	1355.0	6.78%	1222.9	6.14%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e-2	-5.313e+00	0.0244	139.0	0.69%	98.1	0.49%
DREB2(AP2EREBP)/col-DREB2-DAP-Seq(GSE60143)/Homer	TMACCGACATWA	1e-2	-5.138e+00	0.0289	447.0	2.23%	373.8	1.88%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e-2	-5.089e+00	0.0302	283.0	1.42%	225.7	1.13%
AT1G76880(Trihelix)/col-AT1G76880-DAP-Seq(GSE60143)/Homer	ACGGTAAAAW	1e-2	-5.083e+00	0.0302	502.0	2.51%	424.4	2.13%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e-2	-4.959e+00	0.0341	246.0	1.23%	193.9	0.97%
AT1G01250(AP2EREBP)/col-AT1G01250-DAP-Seq(GSE60143)/Homer	YCACCGACAHTW	1e-2	-4.902e+00	0.0359	80.0	0.40%	51.1	0.26%
GBF5(bZIP)/colamp-GBF5-DAP-Seq(GSE60143)/Homer	WKNWSACGTGGCAWN	1e-2	-4.858e+00	0.0373	546.0	2.73%	467.6	2.35%
WRKY22(WRKY)/colamp-WRKY22-DAP-Seq(GSE60143)/Homer	WWAAAGTCAACK	1e-2	-4.854e+00	0.0373	834.0	4.17%	736.2	3.70%
ATHB25(ZFHD)/colamp-ATHB25-DAP-Seq(GSE60143)/Homer	TAATTAVB	1e-2	-4.852e+00	0.0373	1682.0	8.41%	1544.0	7.75%
PABPC1(?)/MEL-PABC1-CLIP-Seq(GSE69755)/Homer	HAATAAAGNN	1e-2	-4.851e+00	0.0373	2594.0	12.97%	2423.8	12.17%
HuR(?)/HEK293-HuR-CLIP-Seq(GSE87887)/Homer	BTTTGGTTTG	1e-2	-4.798e+00	0.0388	6025.0	30.12%	5782.8	29.03%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-2	-4.691e+00	0.0429	891.0	4.46%	792.7	3.98%
TGA10(bZIP)/colamp-TGA10-DAP-Seq(GSE60143)/Homer	ATGACGTC	1e-2	-4.627e+00	0.0456	1267.0	6.33%	1150.6	5.78%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e-2	-4.619e+00	0.0457	436.0	2.18%	368.1	1.85%
O2(bZIP)/Corn-O2-ChIP-Seq(GSE63991)/Homer	GCTGACGTGGCA	1e-2	-4.616e+00	0.0457	260.0	1.30%	208.9	1.05%
MGP(C2H2)/colamp-MGP-DAP-Seq(GSE60143)/Homer	TTTTGTCGTTTW	1e-1	-4.590e+00	0.0466	334.0	1.67%	275.4	1.38%
bZIP48(bZIP)/colamp-bZIP48-DAP-Seq(GSE60143)/Homer	DDWWKVTSACGTGGC	1e-1	-4.412e+00	0.0554	606.0	3.03%	528.5	2.65%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-1	-4.375e+00	0.0572	469.0	2.34%	401.6	2.02%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e-1	-4.363e+00	0.0576	312.0	1.56%	257.0	1.29%
M1BP(Zf)/S2R+-M1BP-ChIP-Seq(GSE49842)/Homer	CAGTGTGACCGT	1e-1	-4.304e+00	0.0608	376.0	1.88%	316.6	1.59%
AZF1(C2H2)/colamp-AZF1-DAP-Seq(GSE60143)/Homer	DKSWCACT	1e-1	-4.292e+00	0.0612	9299.0	46.49%	9042.3	45.39%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-1	-4.289e+00	0.0612	2284.0	11.42%	2137.0	10.73%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e-1	-4.230e+00	0.0645	3474.0	17.37%	3297.0	16.55%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-1	-4.189e+00	0.0669	4349.0	21.75%	4155.0	20.86%
SPL9(SBP)/colamp-SPL9-DAP-Seq(GSE60143)/Homer	BTGTACTT	1e-1	-4.188e+00	0.0669	2609.0	13.05%	2454.7	12.32%
NAM(NAC)/col-NAM-DAP-Seq(GSE60143)/Homer	RGTTRCGTRW	1e-1	-4.186e+00	0.0669	1669.0	8.34%	1544.6	7.75%
TINY(AP2EREBP)/col-TINY-DAP-Seq(GSE60143)/Homer	NNCACCGACA	1e-1	-4.181e+00	0.0669	244.0	1.22%	197.1	0.99%
TCP16(TCP)/colamp-TCP16-DAP-Seq(GSE60143)/Homer	GTGGDCCYNNNNNNN	1e-1	-4.154e+00	0.0680	762.0	3.81%	678.6	3.41%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e-1	-4.144e+00	0.0683	156.0	0.78%	119.5	0.60%
bZIP69(bZIP)/col-bZIP69-DAP-Seq(GSE60143)/Homer	GACAGCTGKCAW	1e-1	-4.136e+00	0.0686	173.0	0.86%	135.0	0.68%
Rap210(AP2EREBP)/col-Rap210-DAP-Seq(GSE60143)/Homer	TGTCGGCA	1e-1	-4.132e+00	0.0686	522.0	2.61%	453.6	2.28%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e-1	-4.096e+00	0.0707	1281.0	6.40%	1173.7	5.89%
ATHB13(Homeobox)/col-ATHB13-DAP-Seq(GSE60143)/Homer	CAATAATT	1e-1	-4.065e+00	0.0726	1444.0	7.22%	1330.5	6.68%
HAT5(Homeobox)/colamp-HAT5-DAP-Seq(GSE60143)/Homer	DCAATWATTG	1e-1	-4.063e+00	0.0726	144.0	0.72%	109.6	0.55%
AT2G38300(G2like)/col-AT2G38300-DAP-Seq(GSE60143)/Homer	ADRGAATGTT	1e-1	-4.056e+00	0.0726	2016.0	10.08%	1883.0	9.45%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-1	-4.032e+00	0.0740	2228.0	11.14%	2089.0	10.49%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-1	-4.028e+00	0.0740	2402.0	12.01%	2257.3	11.33%
bZIP50(bZIP)/colamp-bZIP50-DAP-Seq(GSE60143)/Homer	GATGACGTCA	1e-1	-3.977e+00	0.0775	2174.0	10.87%	2037.1	10.23%
ANAC053(NAC)/colamp-ANAC053-DAP-Seq(GSE60143)/Homer	TDCTTGNNNNNCAAG	1e-1	-3.906e+00	0.0828	614.0	3.07%	542.3	2.72%
TATA-box/SacCer-Promoters/Homer	BBHWTATATA	1e-1	-3.891e+00	0.0837	552.0	2.76%	484.4	2.43%
AT2G33550(Trihelix)/colamp-AT2G33550-DAP-Seq(GSE60143)/Homer	TTTAAGGGCAYTTTT	1e-1	-3.891e+00	0.0837	2838.0	14.19%	2685.6	13.48%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e-1	-3.874e+00	0.0844	69.0	0.34%	46.1	0.23%
EPR1(MYBrelated)/colamp-EPR1-DAP-Seq(GSE60143)/Homer	AAATATCT	1e-1	-3.861e+00	0.0847	466.0	2.33%	404.7	2.03%
LHY1(MYBrelated)/col-LHY1-DAP-Seq(GSE60143)/Homer	AAATATCT	1e-1	-3.861e+00	0.0847	466.0	2.33%	404.7	2.03%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-1	-3.855e+00	0.0849	1617.0	8.09%	1501.2	7.54%
IBL1(bHLH)/Seedling-IBL1-ChIP-Seq(GSE51120)/Homer	CACGTGCC	1e-1	-3.787e+00	0.0905	3174.0	15.87%	3016.6	15.14%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e-1	-3.780e+00	0.0907	394.0	1.97%	338.3	1.70%
At1g14580(C2H2)/colamp-At1g14580-DAP-Seq(GSE60143)/Homer	CASAAAAMGACAAAA	1e-1	-3.716e+00	0.0963	231.0	1.16%	189.2	0.95%
SPL11(SBP)/col100-SPL11-DAP-Seq(GSE60143)/Homer	YTGTACTTBH	1e-1	-3.704e+00	0.0971	796.0	3.98%	717.4	3.60%
AT3G51470(DBP)/col-AT3G51470-DAP-Seq(GSE60143)/Homer	TTWHGGTGCACC	1e-1	-3.669e+00	0.1000	1741.0	8.71%	1625.1	8.16%
TGA9(bZIP)/colamp-TGA9-DAP-Seq(GSE60143)/Homer	VTGACGTC	1e-1	-3.663e+00	0.1002	2137.0	10.69%	2009.8	10.09%
PIF7(bHLH)/col-PIF7-DAP-Seq(GSE60143)/Homer	CCACGTGGNH	1e-1	-3.659e+00	0.1002	442.0	2.21%	384.6	1.93%
BPC1(BBRBPC)/colamp-BPC1-DAP-Seq(GSE60143)/Homer	GARGAGAGAGAA	1e-1	-3.658e+00	0.1002	981.0	4.91%	894.4	4.49%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e-1	-3.654e+00	0.1002	658.0	3.29%	587.4	2.95%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e-1	-3.607e+00	0.1042	634.0	3.17%	565.3	2.84%
BAM8(BES1)/col-BAM8-DAP-Seq(GSE60143)/Homer	NNWSACACGTGTSWN	1e-1	-3.536e+00	0.1114	248.0	1.24%	206.6	1.04%
GAGA-repeat/Arabidopsis-Promoters/Homer	CTCTCTCTCY	1e-1	-3.476e+00	0.1179	1697.0	8.48%	1587.3	7.97%
LIN-39(Homeobox)/cElegans.L3-LIN39-ChIP-Seq(modEncode)/Homer	ATGATTRATG	1e-1	-3.461e+00	0.1191	1772.0	8.86%	1660.9	8.34%
IDD4(C2H2)/col-IDD4-DAP-Seq(GSE60143)/Homer	TTTGTCTTTWTB	1e-1	-3.371e+00	0.1298	1351.0	6.75%	1255.3	6.30%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e-1	-3.356e+00	0.1313	376.0	1.88%	327.0	1.64%
PCF/Arabidopsis-Promoters/Homer	NNWWWTGGGCYTDDN	1e-1	-3.329e+00	0.1343	271.0	1.35%	229.1	1.15%
LBD23(LOBAS2)/colamp-LBD23-DAP-Seq(GSE60143)/Homer	GCGNAWWWTNCGCYW	1e-1	-3.289e+00	0.1392	1404.0	7.02%	1308.1	6.57%
IDD7(C2H2)/col-IDD7-DAP-Seq(GSE60143)/Homer	TTTGTCKTTTTN	1e-1	-3.284e+00	0.1394	537.0	2.69%	478.7	2.40%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e-1	-3.256e+00	0.1428	658.0	3.29%	593.5	2.98%
ANAC075(NAC)/col-ANAC075-DAP-Seq(GSE60143)/Homer	CTTSWWNWWSAAGYT	1e-1	-3.246e+00	0.1436	322.0	1.61%	277.3	1.39%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-1	-3.214e+00	0.1477	1195.0	5.97%	1108.7	5.57%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e-1	-3.193e+00	0.1503	160.0	0.80%	129.4	0.65%
ATHB33(ZFHD)/col-ATHB33-DAP-Seq(GSE60143)/Homer	NGTRATTAAK	1e-1	-3.191e+00	0.1503	1869.0	9.35%	1761.9	8.84%
GT3a(Trihelix)/col-GT3a-DAP-Seq(GSE60143)/Homer	WNACACGTGTYWWAW	1e-1	-3.187e+00	0.1503	317.0	1.58%	273.3	1.37%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e-1	-3.186e+00	0.1503	1735.0	8.67%	1631.3	8.19%
bHLH10(bHLH)/colamp-bHLH10-DAP-Seq(GSE60143)/Homer	YACCGACA	1e-1	-3.143e+00	0.1555	256.0	1.28%	217.9	1.09%
ANAC013(NAC)/col-ANAC013-DAP-Seq(GSE60143)/Homer	CTTGNNNNNCAAGNA	1e-1	-3.142e+00	0.1555	501.0	2.50%	446.8	2.24%
MYB44(MYB)/colamp-MYB44-DAP-Seq(GSE60143)/Homer	CVGTTWWKTCNGTTA	1e-1	-3.135e+00	0.1555	135.0	0.68%	107.2	0.54%
AT3G60490(AP2EREBP)/colamp-AT3G60490-DAP-Seq(GSE60143)/Homer	NNRCCGACANNNNNN	1e-1	-3.129e+00	0.1558	245.0	1.23%	207.1	1.04%
ANAC057(NAC)/colamp-ANAC057-DAP-Seq(GSE60143)/Homer	DVCKTGNNNNNCAMG	1e-1	-3.090e+00	0.1613	873.0	4.37%	801.5	4.02%
SPL14(SBP)/col-SPL14-DAP-Seq(GSE60143)/Homer	NNWHTGTACGGAHNH	1e-1	-3.089e+00	0.1613	138.0	0.69%	110.4	0.55%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-1	-3.085e+00	0.1613	2368.0	11.84%	2250.0	11.29%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e-1	-3.048e+00	0.1664	16.0	0.08%	7.8	0.04%
At2g44940(AP2EREBP)/colamp-At2g44940-DAP-Seq(GSE60143)/Homer	NYACCGACAHNNNNN	1e-1	-3.043e+00	0.1665	183.0	0.92%	151.7	0.76%
RKD2(RWPRK)/colamp-RKD2-DAP-Seq(GSE60143)/Homer	GACKTTTCRDCTTCC	1e-1	-3.022e+00	0.1695	981.0	4.91%	906.3	4.55%
At1g36060(AP2EREBP)/colamp-At1g36060-DAP-Seq(GSE60143)/Homer	NNWWKGTCGGTG	1e-1	-2.998e+00	0.1730	795.0	3.98%	729.0	3.66%
DREB19(AP2EREBP)/colamp-DREB19-DAP-Seq(GSE60143)/Homer	AATGTCGGTK	1e-1	-2.963e+00	0.1785	652.0	3.26%	592.3	2.97%
WRKY45(WRKY)/col-WRKY45-DAP-Seq(GSE60143)/Homer	HNNNKTTGACTWWNH	1e-1	-2.933e+00	0.1831	599.0	3.00%	542.0	2.72%
AT1G72740(MYBrelated)/colamp-AT1G72740-DAP-Seq(GSE60143)/Homer	NNWWAMCCTAAHWNN	1e-1	-2.910e+00	0.1866	1337.0	6.69%	1252.1	6.29%
FRS9(ND)/col-FRS9-DAP-Seq(GSE60143)/Homer	RGAGAGAGAAAG	1e-1	-2.904e+00	0.1871	400.0	2.00%	354.2	1.78%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e-1	-2.843e+00	0.1982	841.0	4.21%	775.9	3.89%
At1g19210(AP2EREBP)/colamp-At1g19210-DAP-Seq(GSE60143)/Homer	HCACCGACCAHN	1e-1	-2.839e+00	0.1983	1633.0	8.16%	1541.3	7.74%
AT3G16280(AP2EREBP)/colamp-AT3G16280-DAP-Seq(GSE60143)/Homer	HCACCGACAHHDHHN	1e-1	-2.805e+00	0.2043	262.0	1.31%	226.8	1.14%
PIF4(bHLH)/Seedling-PIF4-ChIP-Seq(GSE35315)/Homer	NNBCACGTGN	1e-1	-2.788e+00	0.2070	2515.0	12.57%	2403.1	12.06%
GATA1(C2C2gata)/colamp-GATA1-DAP-Seq(GSE60143)/Homer	DDWWYYAGATCTRRW	1e-1	-2.787e+00	0.2070	392.0	1.96%	348.0	1.75%
CBF3(AP2EREBP)/colamp-CBF3-DAP-Seq(GSE60143)/Homer	YNRCCGACATNN	1e-1	-2.761e+00	0.2112	472.0	2.36%	424.2	2.13%
HDG7(HB)/col-HDG7-DAP-Seq(GSE60143)/Homer	WGCATTTAATGC	1e-1	-2.731e+00	0.2169	156.0	0.78%	129.5	0.65%
ANAC047(NAC)/colamp-ANAC047-DAP-Seq(GSE60143)/Homer	WACACGTAACTT	1e-1	-2.729e+00	0.2169	821.0	4.11%	758.3	3.81%
MYB118(MYB)/colamp-MYB118-DAP-Seq(GSE60143)/Homer	TAWCCGTTAC	1e-1	-2.705e+00	0.2211	412.0	2.06%	368.1	1.85%
CRF4(AP2EREBP)/colamp-CRF4-DAP-Seq(GSE60143)/Homer	CGCCGCCA	1e-1	-2.695e+00	0.2224	1062.0	5.31%	992.0	4.98%
ATHB53(HB)/col-ATHB53-DAP-Seq(GSE60143)/Homer	CAATAATT	1e-1	-2.685e+00	0.2238	557.0	2.79%	506.5	2.54%
CAMTA5(CAMTA)/col-CAMTA5-DAP-Seq(GSE60143)/Homer	ACGCGTTTTANACRC	1e-1	-2.673e+00	0.2258	366.0	1.83%	325.3	1.63%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e-1	-2.661e+00	0.2277	227.0	1.14%	195.9	0.98%
SRS7(SRS)/colamp-SRS7-DAP-Seq(GSE60143)/Homer	HATAGGTTTH	1e-1	-2.610e+00	0.2388	4506.0	22.53%	4367.2	21.92%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e-1	-2.585e+00	0.2439	369.0	1.85%	329.6	1.65%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e-1	-2.575e+00	0.2456	41.0	0.21%	28.7	0.14%
AT5G59990(C2C2COlike)/colamp-AT5G59990-DAP-Seq(GSE60143)/Homer	TCTCAACCGTTCATT	1e-1	-2.573e+00	0.2456	20.0	0.10%	11.3	0.06%
AT3G10113(MYBrelated)/col-AT3G10113-DAP-Seq(GSE60143)/Homer	WNAAATATCWWN	1e-1	-2.539e+00	0.2527	522.0	2.61%	475.1	2.38%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-1	-2.536e+00	0.2527	1020.0	5.10%	954.8	4.79%
AT1G69570(C2C2dof)/col-AT1G69570-DAP-Seq(GSE60143)/Homer	WAAAAGTGHH	1e-1	-2.520e+00	0.2559	1706.0	8.53%	1621.4	8.14%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e-1	-2.500e+00	0.2601	895.0	4.47%	834.6	4.19%
CBF2(AP2EREBP)/colamp-CBF2-DAP-Seq(GSE60143)/Homer	YBRCCGACATNNNNN	1e-1	-2.465e+00	0.2685	441.0	2.21%	399.9	2.01%
bHLH80(bHLH)/col-bHLH80-DAP-Seq(GSE60143)/Homer	NNNNDCAASTTGHNN	1e-1	-2.455e+00	0.2702	1112.0	5.56%	1045.9	5.25%
AT4G18450(AP2EREBP)/col-AT4G18450-DAP-Seq(GSE60143)/Homer	ATGGCGGCKG	1e-1	-2.453e+00	0.2702	782.0	3.91%	726.4	3.65%
AT1G49560(G2like)/colamp-AT1G49560-DAP-Seq(GSE60143)/Homer	GAWTCTNWDA	1e-1	-2.451e+00	0.2702	1470.0	7.35%	1393.3	6.99%
At1g75490(AP2EREBP)/colamp-At1g75490-DAP-Seq(GSE60143)/Homer	CACCGMCT	1e-1	-2.450e+00	0.2702	2392.0	11.96%	2294.2	11.52%
At5g08750(C3H)/col-At5g08750-DAP-Seq(GSE60143)/Homer	NWDTTGCGGCTR	1e-1	-2.450e+00	0.2702	579.0	2.90%	531.3	2.67%
RAP21(AP2EREBP)/colamp-RAP21-DAP-Seq(GSE60143)/Homer	BCACCGACAHNN	1e-1	-2.446e+00	0.2702	137.0	0.69%	114.7	0.58%
At5g04390(C2H2)/col200-At5g04390-DAP-Seq(GSE60143)/Homer	AGTGANDN	1e-1	-2.434e+00	0.2703	9849.0	49.24%	9674.2	48.56%
ERF5(AP2EREBP)/colamp-ERF5-DAP-Seq(GSE60143)/Homer	DCMGCCGCCA	1e-1	-2.432e+00	0.2703	880.0	4.40%	821.4	4.12%
At4g18890(BZR)/col-At4g18890-DAP-Seq(GSE60143)/Homer	NDBRCACGTGYR	1e-1	-2.394e+00	0.2794	195.0	0.97%	168.9	0.85%
AT1G77200(AP2EREBP)/colamp-AT1G77200-DAP-Seq(GSE60143)/Homer	ACCGACAHWD	1e-1	-2.377e+00	0.2834	662.0	3.31%	612.6	3.07%
ANAC087(NAC)/col-ANAC087-DAP-Seq(GSE60143)/Homer	WVCKTGHNNNWCAMG	1e-1	-2.330e+00	0.2959	322.0	1.61%	288.3	1.45%
DPL-1(E2F)/cElegans-Adult-ChIP-Seq(modEncode)/Homer	TAGCGCGC	1e-1	-2.320e+00	0.2979	1498.0	7.49%	1424.1	7.15%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e-1	-2.313e+00	0.2991	1349.0	6.74%	1279.8	6.42%
ANAC016(NAC)/col-ANAC016-DAP-Seq(GSE60143)/Homer	WNCTTGNNNNNCAMG	1e-1	-2.311e+00	0.2991	870.0	4.35%	814.3	4.09%
ANAC096(NAC)/colamp-ANAC096-DAP-Seq(GSE60143)/Homer	TACTTGWNNNWCAAG	1e0	-2.295e+00	0.3026	678.0	3.39%	629.9	3.16%
ANAC042(NAC)/col-ANAC042-DAP-Seq(GSE60143)/Homer	CGTNDHNDHNACGKY	1e0	-2.283e+00	0.3053	890.0	4.45%	834.1	4.19%
SND2(NAC)/colamp-SND2-DAP-Seq(GSE60143)/Homer	CTTVWNNNWBAAGNW	1e0	-2.240e+00	0.3177	549.0	2.74%	506.5	2.54%
TOD6?/SacCer-Promoters/Homer	GCGATGAGMT	1e0	-2.236e+00	0.3180	205.0	1.03%	179.3	0.90%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-2.217e+00	0.3230	395.0	1.98%	359.1	1.80%
CBF4(AP2EREBP)/colamp-CBF4-DAP-Seq(GSE60143)/Homer	NRCCGACDWNNNNNN	1e0	-2.194e+00	0.3295	597.0	2.99%	553.9	2.78%
GATA12(C2C2gata)/col-GATA12-DAP-Seq(GSE60143)/Homer	YAGATCTRAW	1e0	-2.186e+00	0.3309	628.0	3.14%	583.8	2.93%
ANL2(HB)/col-ANL2-DAP-Seq(GSE60143)/Homer	CATTAATTGC	1e0	-2.158e+00	0.3392	486.0	2.43%	447.5	2.25%
AT1G12630(AP2EREBP)/colamp-AT1G12630-DAP-Seq(GSE60143)/Homer	TGTCGGCA	1e0	-2.052e+00	0.3760	458.0	2.29%	422.0	2.12%
AT1G20910(ARID)/col-AT1G20910-DAP-Seq(GSE60143)/Homer	THAATTRAWN	1e0	-2.041e+00	0.3791	1708.0	8.54%	1638.4	8.22%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-2.022e+00	0.3851	107.0	0.53%	90.4	0.45%
MYB57(MYB)/col-MYB57-DAP-Seq(GSE60143)/Homer	TTACCTAACT	1e0	-2.020e+00	0.3851	581.0	2.90%	541.6	2.72%
GATA11(C2C2gata)/col-GATA11-DAP-Seq(GSE60143)/Homer	DDHYYAGATCTR	1e0	-1.992e+00	0.3945	460.0	2.30%	426.0	2.14%
TGA3(bZIP)/colamp-TGA3-DAP-Seq(GSE60143)/Homer	WTGATGACGTCATCW	1e0	-1.979e+00	0.3982	322.0	1.61%	293.3	1.47%
ANAC045(NAC)/col-ANAC045-DAP-Seq(GSE60143)/Homer	DNCKTVNNNNNNAMG	1e0	-1.974e+00	0.3988	2499.0	12.50%	2417.1	12.13%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-1.960e+00	0.4034	1502.0	7.51%	1439.7	7.23%
AT5G45580(G2like)/colamp-AT5G45580-DAP-Seq(GSE60143)/Homer	ADRGAATCTH	1e0	-1.951e+00	0.4055	1611.0	8.05%	1546.8	7.76%
bZIP52(bZIP)/colamp-bZIP52-DAP-Seq(GSE60143)/Homer	NDNHCAGCTGTCANN	1e0	-1.923e+00	0.4160	1814.0	9.07%	1746.5	8.77%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e0	-1.921e+00	0.4160	164.0	0.82%	144.2	0.72%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-1.918e+00	0.4160	3984.0	19.92%	3884.4	19.50%
DEAR5(AP2EREBP)/col-DEAR5-DAP-Seq(GSE60143)/Homer	NDWTGTCGGTGRWDN	1e0	-1.874e+00	0.4328	140.0	0.70%	122.6	0.62%
RAP212(AP2EREBP)/col-RAP212-DAP-Seq(GSE60143)/Homer	CGCCGCCATTTT	1e0	-1.871e+00	0.4329	1176.0	5.88%	1123.3	5.64%
SeqBias: TA-repeat	TATATATATA	1e0	-1.868e+00	0.4329	3775.0	18.88%	3680.0	18.47%
ERF9(AP2EREBP)/colamp-ERF9-DAP-Seq(GSE60143)/Homer	AWATGGCGGCGG	1e0	-1.823e+00	0.4514	522.0	2.61%	488.3	2.45%
TBP3(MYBrelated)/col-TBP3-DAP-Seq(GSE60143)/Homer	VYTAGGGCAN	1e0	-1.815e+00	0.4537	1075.0	5.38%	1026.5	5.15%
bHLH122(bHLH)/col100-bHLH122-DAP-Seq(GSE60143)/Homer	NDDCAASTTGHHNWW	1e0	-1.814e+00	0.4537	951.0	4.75%	906.0	4.55%
AT2G28920(ND)/col-AT2G28920-DAP-Seq(GSE60143)/Homer	WAGATATTTWTW	1e0	-1.799e+00	0.4579	317.0	1.58%	291.4	1.46%
AT5G05550(Trihelix)/col-AT5G05550-DAP-Seq(GSE60143)/Homer	HDNHDTCKCCGGMGA	1e0	-1.780e+00	0.4657	2189.0	10.95%	2120.7	10.65%
KAN2(G2like)/colamp-KAN2-DAP-Seq(GSE60143)/Homer	ATATTCTY	1e0	-1.776e+00	0.4660	1781.0	8.91%	1719.4	8.63%
ZML1(C2C2gata)/colamp-ZML1-DAP-Seq(GSE60143)/Homer	ATCWYRACCGTTSRW	1e0	-1.752e+00	0.4760	7.0	0.03%	3.6	0.02%
ANAC092(NAC)/colamp-ANAC092-DAP-Seq(GSE60143)/Homer	WRCKTGWNNNWCAMG	1e0	-1.736e+00	0.4822	397.0	1.98%	369.6	1.86%
VIP1(bZIP)/col-VIP1-DAP-Seq(GSE60143)/Homer	NTTGACAGCTGTCAN	1e0	-1.729e+00	0.4842	227.0	1.14%	206.2	1.03%
bHLH130(bHLH)/col-bHLH130-DAP-Seq(GSE60143)/Homer	GCAACTTG	1e0	-1.714e+00	0.4898	819.0	4.09%	779.5	3.91%
TGA2(bZIP)/colamp-TGA2-DAP-Seq(GSE60143)/Homer	ACGTCAYCHH	1e0	-1.703e+00	0.4939	1090.0	5.45%	1044.8	5.24%
SGR5(C2H2)/colamp-SGR5-DAP-Seq(GSE60143)/Homer	TTTGTCTTTTTT	1e0	-1.688e+00	0.5000	932.0	4.66%	890.7	4.47%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e0	-1.668e+00	0.5085	2887.0	14.44%	2813.6	14.12%
RAP211(AP2EREBP)/colamp-RAP211-DAP-Seq(GSE60143)/Homer	RGCCGGCYWW	1e0	-1.660e+00	0.5111	3496.0	17.48%	3415.7	17.15%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-1.656e+00	0.5116	3174.0	15.87%	3097.7	15.55%
CUC2(NAC)/colamp-CUC2-DAP-Seq(GSE60143)/Homer	TRCKTGTNNNWCAMG	1e0	-1.644e+00	0.5164	332.0	1.66%	309.0	1.55%
TF3A(C2H2)/col-TF3A-DAP-Seq(GSE60143)/Homer	NNDDGAGGAGGWNNN	1e0	-1.643e+00	0.5164	2174.0	10.87%	2111.3	10.60%
DEAR3(AP2EREBP)/colamp-DEAR3-DAP-Seq(GSE60143)/Homer	BCACCGACAWNNNNN	1e0	-1.602e+00	0.5353	246.0	1.23%	226.6	1.14%
EGL-5(Homeobox)/cElegans-L3-EGL5-ChIP-Seq(modEncode)/Homer	ATTTAATGGG	1e0	-1.602e+00	0.5353	1829.0	9.14%	1773.6	8.90%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e0	-1.583e+00	0.5424	62.0	0.31%	52.8	0.27%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-1.576e+00	0.5450	144.0	0.72%	129.9	0.65%
MYB107(MYB)/col-MYB107-DAP-Seq(GSE60143)/Homer	RGTWGGTRRR	1e0	-1.556e+00	0.5541	2091.0	10.46%	2033.6	10.21%
MYB119(MYB)/colamp-MYB119-DAP-Seq(GSE60143)/Homer	YRACCGTTACDD	1e0	-1.552e+00	0.5547	381.0	1.91%	357.7	1.80%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-1.550e+00	0.5547	294.0	1.47%	273.1	1.37%
SeqBias: polyA-repeat	AAAAAAAAAA	1e0	-1.541e+00	0.5579	18980.0	94.90%	18869.2	94.72%
ERF38(AP2EREBP)/col-ERF38-DAP-Seq(GSE60143)/Homer	CACCGACA	1e0	-1.534e+00	0.5599	392.0	1.96%	368.4	1.85%
CUC3(NAC)/col-CUC3-DAP-Seq(GSE60143)/Homer	TRCKTGWNNNACAMG	1e0	-1.533e+00	0.5599	331.0	1.65%	309.7	1.55%
GAGA-repeat/SacCer-Promoters/Homer	CTYTCTYTCTCTCTC	1e0	-1.515e+00	0.5675	6533.0	32.66%	6434.9	32.30%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-1.511e+00	0.5681	441.0	2.21%	416.5	2.09%
CRC(C2C2YABBY)/col-CRC-DAP-Seq(GSE60143)/Homer	TWATSATA	1e0	-1.509e+00	0.5681	1956.0	9.78%	1902.3	9.55%
CUC1(NAC)/col-CUC1-DAP-Seq(GSE60143)/Homer	TACTTGTNNNACAAG	1e0	-1.501e+00	0.5711	449.0	2.25%	424.6	2.13%
BZR1(BZR)/col-BZR1-DAP-Seq(GSE60143)/Homer	NNCRCACGTGCG	1e0	-1.492e+00	0.5745	105.0	0.53%	93.6	0.47%
DDF1(AP2EREBP)/col-DDF1-DAP-Seq(GSE60143)/Homer	GCCGACAT	1e0	-1.486e+00	0.5763	391.0	1.96%	368.8	1.85%
RRTF1(AP2EREBP)/colamp-RRTF1-DAP-Seq(GSE60143)/Homer	CCGCCGCHATTT	1e0	-1.448e+00	0.5969	287.0	1.44%	268.4	1.35%
BPC6(BBRBPC)/col-BPC6-DAP-Seq(GSE60143)/Homer	YTYTCTCTCTCTCTA	1e0	-1.444e+00	0.5975	49.0	0.24%	41.1	0.21%
DREB26(AP2EREBP)/col-DREB26-DAP-Seq(GSE60143)/Homer	CCACCGACAH	1e0	-1.442e+00	0.5975	290.0	1.45%	272.0	1.37%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-1.441e+00	0.5975	2032.0	10.16%	1980.5	9.94%
ERF8(AP2EREBP)/colamp-ERF8-DAP-Seq(GSE60143)/Homer	CGCCGYCATW	1e0	-1.418e+00	0.6084	1537.0	7.69%	1493.7	7.50%
AT3G25990(Trihelix)/colamp-AT3G25990-DAP-Seq(GSE60143)/Homer	TTAACCATAG	1e0	-1.394e+00	0.6213	982.0	4.91%	948.1	4.76%
AT3G58630(Trihelix)/col-AT3G58630-DAP-Seq(GSE60143)/Homer	TCTCCGGCGA	1e0	-1.381e+00	0.6278	232.0	1.16%	216.4	1.09%
AS2(LOBAS2)/col-AS2-DAP-Seq(GSE60143)/Homer	CCGDAAWWHMCGSCG	1e0	-1.372e+00	0.6317	132.0	0.66%	120.4	0.60%
MYB33(MYB)/col-MYB33-DAP-Seq(GSE60143)/Homer	DDTYNGTTAN	1e0	-1.367e+00	0.6337	2755.0	13.78%	2698.2	13.54%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-1.364e+00	0.6337	271.0	1.35%	254.9	1.28%
ZIM(C2C2gata)/col-ZIM-DAP-Seq(GSE60143)/Homer	ATCSRACGGTYRAGA	1e0	-1.363e+00	0.6337	6.0	0.03%	4.0	0.02%
RVE1(MYBrelated)/col-RVE1-DAP-Seq(GSE60143)/Homer	AAATATCT	1e0	-1.361e+00	0.6337	627.0	3.14%	601.9	3.02%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e0	-1.357e+00	0.6337	379.0	1.90%	359.3	1.80%
bHLH157(bHLH)/col-bHLH157-DAP-Seq(GSE60143)/Homer	KACACGTCTCTY	1e0	-1.357e+00	0.6337	308.0	1.54%	290.5	1.46%
CBF1(AP2EREBP)/colamp-CBF1-DAP-Seq(GSE60143)/Homer	YRCCGACATN	1e0	-1.350e+00	0.6342	641.0	3.21%	615.6	3.09%
ANAC094(NAC)/col-ANAC094-DAP-Seq(GSE60143)/Homer	DVCGTRNNNNNYACG	1e0	-1.349e+00	0.6342	465.0	2.33%	443.9	2.23%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-1.339e+00	0.6377	78.0	0.39%	70.0	0.35%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	-1.337e+00	0.6377	2624.0	13.12%	2570.0	12.90%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e0	-1.337e+00	0.6377	4809.0	24.04%	4735.5	23.77%
NAC2(NAC)/colamp-NAC2-DAP-Seq(GSE60143)/Homer	TDCTTGNNNNNCAAG	1e0	-1.335e+00	0.6377	710.0	3.55%	683.8	3.43%
ANAC004(NAC)/colamp-ANAC004-DAP-Seq(GSE60143)/Homer	WNCTTVYNNNRBAAG	1e0	-1.325e+00	0.6398	406.0	2.03%	386.2	1.94%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-1.325e+00	0.6398	230.0	1.15%	216.0	1.08%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	-1.324e+00	0.6398	47.0	0.24%	40.0	0.20%
At3g60580(C2H2)/col-At3g60580-DAP-Seq(GSE60143)/Homer	WTTYTACT	1e0	-1.314e+00	0.6420	8851.0	44.26%	8754.7	43.95%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e0	-1.296e+00	0.6520	1938.0	9.69%	1894.7	9.51%
ANAC062(NAC)/colamp-ANAC062-DAP-Seq(GSE60143)/Homer	TACTTANTNWNYAAG	1e0	-1.295e+00	0.6520	434.0	2.17%	415.0	2.08%
GATA14(C2C2gata)/col-GATA14-DAP-Seq(GSE60143)/Homer	AYCAGATCTG	1e0	-1.277e+00	0.6607	749.0	3.74%	723.6	3.63%
At4g01280(MYBrelated)/colamp-At4g01280-DAP-Seq(GSE60143)/Homer	AAATATCT	1e0	-1.264e+00	0.6678	611.0	3.06%	588.7	2.96%
PLT3(AP2EREBP)/col-PLT3-DAP-Seq(GSE60143)/Homer	GCACGNWTHYCGAGG	1e0	-1.259e+00	0.6693	55.0	0.27%	48.1	0.24%
RAV1(RAV)/colamp-RAV1-DAP-Seq(GSE60143)/Homer	TWWTTTCTGTTG	1e0	-1.238e+00	0.6823	1010.0	5.05%	981.1	4.92%
MYB88(MYB)/col-MYB88-DAP-Seq(GSE60143)/Homer	HNACGCTCCT	1e0	-1.232e+00	0.6844	3023.0	15.12%	2971.9	14.92%
NTM2(NAC)/col-NTM2-DAP-Seq(GSE60143)/Homer	CTTRTNNNAYAAGBH	1e0	-1.195e+00	0.7086	611.0	3.06%	590.0	2.96%
MYB27(MYB)/colamp-MYB27-DAP-Seq(GSE60143)/Homer	TACCTAACWT	1e0	-1.191e+00	0.7096	206.0	1.03%	194.6	0.98%
WRKY21(WRKY)/colamp-WRKY21-DAP-Seq(GSE60143)/Homer	DCGTTGACTTTT	1e0	-1.190e+00	0.7096	142.0	0.71%	132.6	0.67%
ANAC028(NAC)/col-ANAC028-DAP-Seq(GSE60143)/Homer	WRCTTGNNNNNCAAG	1e0	-1.186e+00	0.7097	744.0	3.72%	721.6	3.62%
ANAC011(NAC)/col-ANAC011-DAP-Seq(GSE60143)/Homer	TDCTTGYRNNDCAAG	1e0	-1.176e+00	0.7144	335.0	1.68%	320.9	1.61%
AT4G37180(G2like)/col-AT4G37180-DAP-Seq(GSE60143)/Homer	AGAATCTTNN	1e0	-1.173e+00	0.7153	1264.0	6.32%	1234.5	6.20%
ANAC050(NAC)/colamp-ANAC050-DAP-Seq(GSE60143)/Homer	WNCTTGNNNNNCAAG	1e0	-1.170e+00	0.7153	595.0	2.97%	575.8	2.89%
At4g31060(AP2EREBP)/colamp-At4g31060-DAP-Seq(GSE60143)/Homer	CACCGACAAW	1e0	-1.163e+00	0.7184	348.0	1.74%	333.4	1.67%
WRKY8(WRKY)/colamp-WRKY8-DAP-Seq(GSE60143)/Homer	CGTTGACTTT	1e0	-1.159e+00	0.7200	190.0	0.95%	179.1	0.90%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-1.156e+00	0.7203	5563.0	27.82%	5497.6	27.60%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-1.154e+00	0.7203	1093.0	5.46%	1066.7	5.35%
VND1(NAC)/col-VND1-DAP-Seq(GSE60143)/Homer	CTTRWDNHWYAAGYW	1e0	-1.151e+00	0.7204	819.0	4.09%	796.4	4.00%
At1g77640(AP2EREBP)/col-At1g77640-DAP-Seq(GSE60143)/Homer	TGTCGGTGGA	1e0	-1.149e+00	0.7204	196.0	0.98%	185.6	0.93%
At5g65130(AP2EREBP)/colamp-At5g65130-DAP-Seq(GSE60143)/Homer	CCRCCGACAWTN	1e0	-1.146e+00	0.7204	320.0	1.60%	306.3	1.54%
SHN3(AP2EREBP)/col-SHN3-DAP-Seq(GSE60143)/Homer	CCGCCGCC	1e0	-1.136e+00	0.7259	721.0	3.60%	700.3	3.52%
GATA6(C2C2gata)/col200-GATA6-DAP-Seq(GSE60143)/Homer	TAGATCTARAHH	1e0	-1.118e+00	0.7370	84.0	0.42%	77.9	0.39%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e0	-1.103e+00	0.7467	4517.0	22.59%	4462.8	22.40%
Unknown1(NR/Ini-like)/Drosophila-Promoters/Homer	MYGGTCACACTG	1e0	-1.102e+00	0.7467	272.0	1.36%	260.5	1.31%
SMB(NAC)/colamp-SMB-DAP-Seq(GSE60143)/Homer	CTTVNNNNDBAAGHW	1e0	-1.102e+00	0.7467	946.0	4.73%	923.6	4.64%
VND3(NAC)/colamp-VND3-DAP-Seq(GSE60143)/Homer	TRCTTGWDNHWCAAG	1e0	-1.101e+00	0.7467	665.0	3.33%	646.3	3.24%
At3g04030(G2like)/col-At3g04030-DAP-Seq(GSE60143)/Homer	DRGAATCT	1e0	-1.099e+00	0.7467	954.0	4.77%	931.8	4.68%
ERF3(AP2EREBP)/colamp-ERF3-DAP-Seq(GSE60143)/Homer	ATGGCGGCGG	1e0	-1.094e+00	0.7467	1130.0	5.65%	1105.1	5.55%
bHLH28(bHLH)/col-bHLH28-DAP-Seq(GSE60143)/Homer	NHHTGTACGGAH	1e0	-1.087e+00	0.7472	160.0	0.80%	151.1	0.76%
PTF1(TCP)/colamp-PTF1-DAP-Seq(GSE60143)/Homer	RDDGGGACCACA	1e0	-1.079e+00	0.7514	69.0	0.34%	63.5	0.32%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e0	-1.064e+00	0.7608	2254.0	11.27%	2219.7	11.14%
IDD5(C2H2)/colamp-IDD5-DAP-Seq(GSE60143)/Homer	TTTTGTCTTTTTBTK	1e0	-1.036e+00	0.7807	994.0	4.97%	973.7	4.89%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-1.034e+00	0.7807	295.0	1.47%	284.4	1.43%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-1.026e+00	0.7847	1611.0	8.05%	1584.6	7.95%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-1.022e+00	0.7861	711.0	3.55%	694.7	3.49%
CAMTA1(CAMTA)/col-CAMTA1-DAP-Seq(GSE60143)/Homer	WWAACGCGTT	1e0	-1.017e+00	0.7880	574.0	2.87%	559.5	2.81%
ANAC103(NAC)/col-ANAC103-DAP-Seq(GSE60143)/Homer	AACTTGNWNWNCAAG	1e0	-9.982e-01	0.8014	407.0	2.04%	395.8	1.99%
GATA19(C2C2gata)/colamp-GATA19-DAP-Seq(GSE60143)/Homer	ATCSGATCVG	1e0	-9.953e-01	0.8018	66.0	0.33%	61.1	0.31%
ATHB21(HB)/colamp-ATHB21-DAP-Seq(GSE60143)/Homer	YCAATWAT	1e0	-9.953e-01	0.8018	628.0	3.14%	613.6	3.08%
ANAC046(NAC)/colamp-ANAC046-DAP-Seq(GSE60143)/Homer	ACACGYWAYC	1e0	-9.844e-01	0.8068	2622.0	13.11%	2589.2	13.00%
VND4(NAC)/colamp-VND4-DAP-Seq(GSE60143)/Homer	WRCTTGWANWWCAAG	1e0	-9.800e-01	0.8085	754.0	3.77%	738.2	3.71%
MYB98(MYB)/col-MYB98-DAP-Seq(GSE60143)/Homer	NWDCCGTTAC	1e0	-9.599e-01	0.8230	411.0	2.05%	400.4	2.01%
At3g12730(G2like)/colamp-At3g12730-DAP-Seq(GSE60143)/Homer	AAGATTCT	1e0	-9.470e-01	0.8317	1518.0	7.59%	1496.7	7.51%
bHLH18(bHLH)/col-bHLH18-DAP-Seq(GSE60143)/Homer	CACGTGTTYCACGTG	1e0	-9.457e-01	0.8317	51.0	0.26%	47.5	0.24%
CCA(Myb)/Arabidopsis-CCA.GFP-ChIP-Seq(GSE70533)/Homer	AGATATYTTT	1e0	-9.406e-01	0.8332	898.0	4.49%	882.9	4.43%
MYB3(MYB)/Arabidopsis-MYB3-ChIP-Seq(GSE80564)/Homer	GKTAGGTRGG	1e0	-9.328e-01	0.8378	2265.0	11.33%	2238.2	11.23%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-9.285e-01	0.8395	96.0	0.48%	91.1	0.46%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-9.261e-01	0.8395	408.0	2.04%	398.8	2.00%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-9.232e-01	0.8400	3906.0	19.53%	3869.2	19.42%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e0	-9.139e-01	0.8460	3866.0	19.33%	3830.2	19.23%
At1g72010(TCP)/colamp-At1g72010-DAP-Seq(GSE60143)/Homer	GGDCCCAC	1e0	-9.009e-01	0.8551	657.0	3.28%	645.2	3.24%
ANAC058(NAC)/col-ANAC058-DAP-Seq(GSE60143)/Homer	TWCTTGTDNNACAAG	1e0	-9.006e-01	0.8551	562.0	2.81%	551.6	2.77%
ASHR1(ND)/col-ASHR1-DAP-Seq(GSE60143)/Homer	NTGGTGAN	1e0	-8.971e-01	0.8551	2024.0	10.12%	2001.1	10.04%
LHY(Myb)/Seedling-LHY-ChIP-Seq(GSE52175)/Homer	ADAAATATCT	1e0	-8.962e-01	0.8551	1114.0	5.57%	1098.9	5.52%
At4g16750(AP2EREBP)/col-At4g16750-DAP-Seq(GSE60143)/Homer	HACCGACAHA	1e0	-8.919e-01	0.8551	591.0	2.96%	580.3	2.91%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-8.884e-01	0.8560	603.0	3.02%	592.1	2.97%
At1g22810(AP2EREBP)/colamp-At1g22810-DAP-Seq(GSE60143)/Homer	BCACCGACANNN	1e0	-8.808e-01	0.8606	437.0	2.19%	428.1	2.15%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e0	-8.640e-01	0.8733	4835.0	24.18%	4798.4	24.09%
ERF10(AP2EREBP)/col-ERF10-DAP-Seq(GSE60143)/Homer	RTGGCGGCGG	1e0	-8.601e-01	0.8747	1082.0	5.41%	1068.1	5.36%
bZIP42(bZIP)/colamp-bZIP42-DAP-Seq(GSE60143)/Homer	GCCACGTCAGCA	1e0	-8.599e-01	0.8747	13.0	0.07%	11.4	0.06%
NAP(NAC)/col-NAP-DAP-Seq(GSE60143)/Homer	ARGTTACGTRTN	1e0	-8.566e-01	0.8747	1237.0	6.19%	1222.8	6.14%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e0	-8.533e-01	0.8748	3330.0	16.65%	3302.7	16.58%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e0	-8.487e-01	0.8769	172.0	0.86%	167.7	0.84%
SPL15(SBP)/colamp-SPL15-DAP-Seq(GSE60143)/Homer	WDWMMGTACADW	1e0	-8.394e-01	0.8831	1513.0	7.56%	1497.8	7.52%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-8.349e-01	0.8851	194.0	0.97%	189.5	0.95%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e0	-8.266e-01	0.8905	4730.0	23.65%	4697.8	23.58%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-8.256e-01	0.8905	2648.0	13.24%	2626.0	13.18%
TCP20(TCP)/col-TCP20-DAP-Seq(GSE60143)/Homer	GGDCCCAC	1e0	-8.248e-01	0.8905	524.0	2.62%	516.0	2.59%
SeqBias: GCW-triplet	GCWGCWGCWGCW	1e0	-8.169e-01	0.8933	19972.0	99.86%	19891.0	99.85%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-8.077e-01	0.8996	2900.0	14.50%	2878.0	14.45%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-8.056e-01	0.8996	2375.0	11.88%	2356.9	11.83%
ERF11(AP2EREBP)/col-ERF11-DAP-Seq(GSE60143)/Homer	RTGGCGGCGG	1e0	-8.055e-01	0.8996	1349.0	6.74%	1336.1	6.71%
SeqBias: A/T bias	WWWWWWWWWW	1e0	-7.993e-01	0.9013	14639.0	73.19%	14570.0	73.14%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-7.963e-01	0.9020	3471.0	17.36%	3447.4	17.30%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e0	-7.957e-01	0.9020	2699.0	13.49%	2679.9	13.45%
SPL5(SBP)/colamp-SPL5-DAP-Seq(GSE60143)/Homer	NNHGTACGGHNN	1e0	-7.890e-01	0.9047	305.0	1.52%	300.8	1.51%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-7.883e-01	0.9047	101.0	0.51%	98.2	0.49%
At4g28140(AP2EREBP)/colamp-At4g28140-DAP-Seq(GSE60143)/Homer	DCCACCGACCAW	1e0	-7.834e-01	0.9058	324.0	1.62%	319.9	1.61%
AT5G22990(C2H2)/col-AT5G22990-DAP-Seq(GSE60143)/Homer	WCGAHDTCGWHN	1e0	-7.786e-01	0.9082	36.0	0.18%	34.4	0.17%
MYB113(MYB)/col-MYB113-DAP-Seq(GSE60143)/Homer	HNDAWTCMGTTAYWN	1e0	-7.757e-01	0.9089	638.0	3.19%	631.6	3.17%
AT1G23810(Orphan)/col-AT1G23810-DAP-Seq(GSE60143)/Homer	TTCTAGAAGSTTCTA	1e0	-7.754e-01	0.9089	38.0	0.19%	36.9	0.19%
VND2(NAC)/col-VND2-DAP-Seq(GSE60143)/Homer	DNCKTNNNNNNNAAG	1e0	-7.723e-01	0.9089	984.0	4.92%	975.1	4.89%
AT2G40260(G2like)/colamp-AT2G40260-DAP-Seq(GSE60143)/Homer	WAAAYATTCTTT	1e0	-7.670e-01	0.9110	2149.0	10.75%	2134.1	10.71%
At2g01060(G2like)/colamp-At2g01060-DAP-Seq(GSE60143)/Homer	AGATKCBNWW	1e0	-7.667e-01	0.9110	3592.0	17.96%	3570.4	17.92%
SeqBias: CG bias	SSSSSSSSSS	1e0	-7.628e-01	0.9110	13717.0	68.58%	13654.8	68.54%
AT3G57600(AP2EREBP)/col-AT3G57600-DAP-Seq(GSE60143)/Homer	GGCGGTGG	1e0	-7.627e-01	0.9110	1435.0	7.17%	1424.6	7.15%
ERF7(AP2EREBP)/col-ERF7-DAP-Seq(GSE60143)/Homer	ATGRCGGCGG	1e0	-7.557e-01	0.9136	1911.0	9.55%	1898.7	9.53%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e0	-7.511e-01	0.9159	997.0	4.98%	989.6	4.97%
CEJ1(AP2EREBP)/col-CEJ1-DAP-Seq(GSE60143)/Homer	WWTGTCGGTG	1e0	-7.482e-01	0.9166	1025.0	5.12%	1017.3	5.11%
MS188(MYB)/colamp-MS188-DAP-Seq(GSE60143)/Homer	WARKTAGGTRRA	1e0	-7.410e-01	0.9213	905.0	4.52%	898.0	4.51%
ERF4(AP2EREBP)/colamp-ERF4-DAP-Seq(GSE60143)/Homer	WDWTGGCGGCGG	1e0	-7.378e-01	0.9223	1542.0	7.71%	1532.1	7.69%
NUC(C2H2)/col-NUC-DAP-Seq(GSE60143)/Homer	HAVAAAACGACAAAA	1e0	-7.372e-01	0.9223	81.0	0.40%	79.2	0.40%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e0	-7.051e-01	0.9490	4496.0	22.48%	4476.9	22.47%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e0	-6.931e-01	0.9585	3546.0	17.73%	3531.4	17.73%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-6.903e-01	0.9592	795.0	3.98%	791.8	3.97%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-6.856e-01	0.9617	313.0	1.57%	312.0	1.57%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-6.852e-01	0.9617	13.0	0.07%	13.0	0.07%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	-6.819e-01	0.9617	26.0	0.13%	25.3	0.13%
SPL13(SBP)/col-SPL13-DAP-Seq(GSE60143)/Homer	WAHTGTACGGAH	1e0	-6.723e-01	0.9686	89.0	0.45%	88.9	0.45%
MYB93(MYB)/colamp-MYB93-DAP-Seq(GSE60143)/Homer	GGTAGGTGRD	1e0	-6.682e-01	0.9706	1425.0	7.12%	1420.8	7.13%
ERF1(AP2EREBP)/colamp-ERF1-DAP-Seq(GSE60143)/Homer	GGCGGCTR	1e0	-6.503e-01	0.9860	1152.0	5.76%	1149.9	5.77%
At5g52660(MYBrelated)/colamp-At5g52660-DAP-Seq(GSE60143)/Homer	HAAAAATATCTW	1e0	-6.447e-01	0.9895	483.0	2.42%	482.5	2.42%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-6.441e-01	0.9895	7094.0	35.47%	7071.7	35.50%
SeqBias: CG-repeat	CGCGCGCGCG	1e0	-6.413e-01	0.9895	3273.0	16.36%	3264.5	16.39%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e0	-6.381e-01	0.9900	624.0	3.12%	623.3	3.13%
ANAC083(NAC)/col-ANAC083-DAP-Seq(GSE60143)/Homer	CKTRWNNNWYAMGTA	1e0	-6.350e-01	0.9911	695.0	3.48%	695.0	3.49%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-6.323e-01	0.9917	2603.0	13.01%	2597.2	13.04%
LOB(LOBAS2)/col-LOB-DAP-Seq(GSE60143)/Homer	CGCCGKAWWTTHCGS	1e0	-6.225e-01	0.9995	386.0	1.93%	386.7	1.94%
Unknown4/Drosophila-Promoters/Homer	AAAAATACCRMA	1e0	-6.208e-01	0.9995	131.0	0.66%	131.0	0.66%
AT2G01818(PLATZ)/col-AT2G01818-DAP-Seq(GSE60143)/Homer	TCTAGAABSTTC	1e0	-6.193e-01	0.9995	115.0	0.57%	115.5	0.58%
ANAC020(NAC)/col-ANAC020-DAP-Seq(GSE60143)/Homer	DVCKTGHNNNDCAAG	1e0	-6.169e-01	0.9995	615.0	3.08%	615.9	3.09%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)	NNAYTTCCTGHN	1e0	-6.055e-01	1.0000	3464.0	17.32%	3458.2	17.36%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e0	-6.020e-01	1.0000	4879.0	24.39%	4869.9	24.45%
At5g08330(TCP)/col-At5g08330-DAP-Seq(GSE60143)/Homer	GGRCCCAC	1e0	-5.750e-01	1.0000	852.0	4.26%	855.0	4.29%
EFL-1(E2F)/cElegans-L1-EFL1-ChIP-Seq(modEncode)/Homer	TGCAARYGCGCTCYA	1e0	-5.730e-01	1.0000	23.0	0.11%	23.6	0.12%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-5.701e-01	1.0000	381.0	1.91%	383.0	1.92%
AT1G10720(BSD)/col-AT1G10720-DAP-Seq(GSE60143)/Homer	TTCTAGAAKCTTCTA	1e0	-5.636e-01	1.0000	19.0	0.10%	19.4	0.10%
At5g29000(G2like)/col-At5g29000-DAP-Seq(GSE60143)/Homer	RGAATATTCYHH	1e0	-5.580e-01	1.0000	234.0	1.17%	236.0	1.18%
HSF6(HSF)/col-HSF6-DAP-Seq(GSE60143)/Homer	TTYTAGAAGCTTCTA	1e0	-5.580e-01	1.0000	234.0	1.17%	236.1	1.19%
MYB56(MYB)/colamp-MYB56-DAP-Seq(GSE60143)/Homer	HTAACGRMHY	1e0	-5.579e-01	1.0000	985.0	4.92%	988.6	4.96%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	-5.567e-01	1.0000	1208.0	6.04%	1211.4	6.08%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-5.566e-01	1.0000	689.0	3.45%	692.6	3.48%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-5.486e-01	1.0000	180.0	0.90%	182.2	0.91%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-5.424e-01	1.0000	349.0	1.75%	352.3	1.77%
ESE1(AP2EREBP)/col-ESE1-DAP-Seq(GSE60143)/Homer	GGCGGCGG	1e0	-5.419e-01	1.0000	1333.0	6.67%	1337.4	6.71%
Pho4(bHLH)/Yeast-Pho4-ChIP-Seq(GSE29506)/Homer	AAGCACGTGBGD	1e0	-5.418e-01	1.0000	342.0	1.71%	346.0	1.74%
STOP1(C2H2)/colamp-STOP1-DAP-Seq(GSE60143)/Homer	DTATCTGGKGRAGGT	1e0	-5.322e-01	1.0000	533.0	2.67%	537.4	2.70%
MYB94(MYB)/col-MYB94-DAP-Seq(GSE60143)/Homer	WGGTRGTTGGKA	1e0	-5.298e-01	1.0000	490.0	2.45%	494.8	2.48%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e0	-5.286e-01	1.0000	1287.0	6.44%	1292.2	6.49%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-5.234e-01	1.0000	2898.0	14.49%	2902.8	14.57%
ERF73(AP2EREBP)/col-ERF73-DAP-Seq(GSE60143)/Homer	CCGCCGCC	1e0	-5.147e-01	1.0000	1195.0	5.97%	1201.3	6.03%
HSF7(HSF)/colamp-HSF7-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e0	-5.138e-01	1.0000	180.0	0.90%	183.2	0.92%
TATA-box/Drosophila-Promoters/Homer	CTATAAAAGCSV	1e0	-5.049e-01	1.0000	79.0	0.40%	81.3	0.41%
AT2G20110(CPP)/colamp-AT2G20110-DAP-Seq(GSE60143)/Homer	ATTYAAATHY	1e0	-5.039e-01	1.0000	1749.0	8.74%	1756.8	8.82%
STZ(C2H2)/colamp-STZ-DAP-Seq(GSE60143)/Homer	HNBTCACT	1e0	-4.986e-01	1.0000	10169.0	50.84%	10155.1	50.98%
At1g13300(G2like)/col-At1g13300-DAP-Seq(GSE60143)/Homer	GAATCTWAGATTCYN	1e0	-4.981e-01	1.0000	7.0	0.03%	7.2	0.04%
Knotted(Homeobox)/Corn-KN1-ChIP-Seq(GSE39161)/Homer	GAYGNGACRGGN	1e0	-4.919e-01	1.0000	2206.0	11.03%	2214.7	11.12%
CDF3(C2C2dof)/colamp-CDF3-DAP-Seq(GSE60143)/Homer	AAAAGTRM	1e0	-4.884e-01	1.0000	2743.0	13.71%	2751.2	13.81%
HSFA6A(HSF)/col-HSFA6A-DAP-Seq(GSE60143)/Homer	RGAAGNTTCTAGAAN	1e0	-4.882e-01	1.0000	26.0	0.13%	27.8	0.14%
ERF104(AP2EREBP)/col-ERF104-DAP-Seq(GSE60143)/Homer	GGCGGCGG	1e0	-4.814e-01	1.0000	1688.0	8.44%	1697.6	8.52%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-4.777e-01	1.0000	103.0	0.52%	106.6	0.54%
MYB121(MYB)/col-MYB121-DAP-Seq(GSE60143)/Homer	YNTACCTAACWW	1e0	-4.704e-01	1.0000	353.0	1.76%	359.1	1.80%
ANAC079(NAC)/colamp-ANAC079-DAP-Seq(GSE60143)/Homer	TACACGCAACCT	1e0	-4.578e-01	1.0000	409.0	2.04%	416.2	2.09%
PUCHI(AP2EREBP)/colamp-PUCHI-DAP-Seq(GSE60143)/Homer	GCGCCGTY	1e0	-4.510e-01	1.0000	1236.0	6.18%	1247.1	6.26%
ATHB40(HB)/col-ATHB40-DAP-Seq(GSE60143)/Homer	HCAATWATTG	1e0	-4.508e-01	1.0000	901.0	4.50%	912.0	4.58%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	-4.480e-01	1.0000	4.0	0.02%	4.0	0.02%
REM16(ABI3VP1)/col-REM16-DAP-Seq(GSE60143)/Homer	DTTTTTSCCGSMAAA	1e0	-4.480e-01	1.0000	4.0	0.02%	4.2	0.02%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-4.475e-01	1.0000	1593.0	7.96%	1605.5	8.06%
At1g25550(G2like)/colamp-At1g25550-DAP-Seq(GSE60143)/Homer	NAGATTCY	1e0	-4.460e-01	1.0000	1091.0	5.46%	1102.7	5.54%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-4.458e-01	1.0000	815.0	4.08%	825.8	4.15%
LCL1(MYBrelated)/colamp-LCL1-DAP-Seq(GSE60143)/Homer	NAAAATATCTWHWWN	1e0	-4.385e-01	1.0000	158.0	0.79%	163.5	0.82%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-4.343e-01	1.0000	100.0	0.50%	104.2	0.52%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e0	-4.247e-01	1.0000	4675.0	23.38%	4689.2	23.54%
ESE3(AP2EREBP)/col-ESE3-DAP-Seq(GSE60143)/Homer	GACGGTGG	1e0	-4.234e-01	1.0000	2005.0	10.03%	2020.0	10.14%
NST1(NAC)/colamp-NST1-DAP-Seq(GSE60143)/Homer	WRCTTRWWNWWYAAG	1e0	-4.221e-01	1.0000	884.0	4.42%	896.8	4.50%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	-4.184e-01	1.0000	3.0	0.01%	3.6	0.02%
ANAC071(NAC)/col-ANAC071-DAP-Seq(GSE60143)/Homer	DNCKTNDNNNHNAAG	1e0	-4.150e-01	1.0000	788.0	3.94%	800.1	4.02%
LEP(AP2EREBP)/col-LEP-DAP-Seq(GSE60143)/Homer	CDCCGCCGTC	1e0	-4.137e-01	1.0000	495.0	2.48%	505.4	2.54%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-4.077e-01	1.0000	458.0	2.29%	468.4	2.35%
WRKY46(WRKY)/colamp-WRKY46-DAP-Seq(GSE60143)/Homer	AAAGTCAACGSN	1e0	-3.999e-01	1.0000	70.0	0.35%	74.8	0.38%
TCX2(CPP)/colamp-TCX2-DAP-Seq(GSE60143)/Homer	NNWWTTYRAAHN	1e0	-3.933e-01	1.0000	1867.0	9.34%	1885.1	9.46%
E-box/Drosophila-Promoters/Homer	AACAGCTGTTHN	1e0	-3.910e-01	1.0000	300.0	1.50%	309.3	1.55%
NTM1(NAC)/col-NTM1-DAP-Seq(GSE60143)/Homer	ACTTRTARAASAAGT	1e0	-3.888e-01	1.0000	552.0	2.76%	564.1	2.83%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-3.871e-01	1.0000	173.0	0.86%	180.1	0.90%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e0	-3.755e-01	1.0000	802.0	4.01%	817.8	4.11%
FUS3(ABI3VP1)/col-FUS3-DAP-Seq(GSE60143)/Homer	DNNWTNTGCATGKNN	1e0	-3.711e-01	1.0000	1231.0	6.16%	1249.0	6.27%
JKD(C2H2)/col-JKD-DAP-Seq(GSE60143)/Homer	TTTTGTCGTTTT	1e0	-3.709e-01	1.0000	192.0	0.96%	200.0	1.00%
AT1G28160(AP2EREBP)/colamp-AT1G28160-DAP-Seq(GSE60143)/Homer	GGCGGCGG	1e0	-3.675e-01	1.0000	2954.0	14.77%	2977.6	14.95%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-3.636e-01	1.0000	179.0	0.90%	187.9	0.94%
MYB61(MYB)/colamp-MYB61-DAP-Seq(GSE60143)/Homer	HCYACCTACC	1e0	-3.633e-01	1.0000	1753.0	8.77%	1774.1	8.91%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-3.591e-01	1.0000	2270.0	11.35%	2294.0	11.51%
MYB96(MYB)/colamp-MYB96-DAP-Seq(GSE60143)/Homer	WGGTRGTTGG	1e0	-3.574e-01	1.0000	1175.0	5.88%	1194.6	6.00%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-3.484e-01	1.0000	3177.0	15.88%	3203.6	16.08%
FAR1(FAR1)/col-FAR1-DAP-Seq(GSE60143)/Homer	TKNNNYYCACGCGCY	1e0	-3.482e-01	1.0000	120.0	0.60%	127.8	0.64%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-3.463e-01	1.0000	415.0	2.08%	428.5	2.15%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e0	-3.451e-01	1.0000	4212.0	21.06%	4239.5	21.28%
GT1(Trihelix)/col-GT1-DAP-Seq(GSE60143)/Homer	TTAACCATGGTTAAD	1e0	-3.397e-01	1.0000	6.0	0.03%	7.7	0.04%
AT5G25475(ABI3VP1)/col-AT5G25475-DAP-Seq(GSE60143)/Homer	RNNRNCAAGCADNDB	1e0	-3.389e-01	1.0000	1375.0	6.88%	1397.6	7.02%
HSFA1E(HSF)/col-HSFA1E-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e0	-3.292e-01	1.0000	55.0	0.27%	60.9	0.31%
ANAC038(NAC)/col-ANAC038-DAP-Seq(GSE60143)/Homer	ACACGTWAYC	1e0	-3.137e-01	1.0000	2965.0	14.82%	2996.2	15.04%
ERF2(AP2EREBP)/colamp-ERF2-DAP-Seq(GSE60143)/Homer	GGCGGCTG	1e0	-3.126e-01	1.0000	1245.0	6.22%	1269.2	6.37%
TCP3(TCP)/colamp-TCP3-DAP-Seq(GSE60143)/Homer	WGTGGTCCCAAHWWW	1e0	-3.108e-01	1.0000	174.0	0.87%	184.2	0.92%
ERF13(AP2EREBP)/colamp-ERF13-DAP-Seq(GSE60143)/Homer	TYAGCCGCCATT	1e0	-3.090e-01	1.0000	1657.0	8.29%	1684.7	8.46%
MYB105(MYB)/colamp-MYB105-DAP-Seq(GSE60143)/Homer	RATWCCGTTA	1e0	-3.078e-01	1.0000	664.0	3.32%	683.7	3.43%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e0	-3.070e-01	1.0000	336.0	1.68%	350.8	1.76%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e0	-3.032e-01	1.0000	1706.0	8.53%	1734.2	8.71%
SND3(NAC)/col-SND3-DAP-Seq(GSE60143)/Homer	CTTNHNNNDNAAGNH	1e0	-3.031e-01	1.0000	714.0	3.57%	734.2	3.69%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-2.969e-01	1.0000	126.0	0.63%	135.0	0.68%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e0	-2.947e-01	1.0000	1382.0	6.91%	1409.1	7.07%
HSFB4(HSF)/col-HSFB4-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e0	-2.935e-01	1.0000	28.0	0.14%	32.0	0.16%
MYB116(MYB)/colamp-MYB116-DAP-Seq(GSE60143)/Homer	AGTTAGGCAN	1e0	-2.889e-01	1.0000	776.0	3.88%	798.2	4.01%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e0	-2.879e-01	1.0000	1407.0	7.03%	1435.9	7.21%
GBF3(bZIP)/Arabidopsis-GBF3-ChIP-Seq(GSE80564)/Homer	TGCCACGTSAYC	1e0	-2.869e-01	1.0000	683.0	3.42%	704.1	3.53%
WRKY7(WRKY)/colamp-WRKY7-DAP-Seq(GSE60143)/Homer	AAAAGTCAACGSHWD	1e0	-2.864e-01	1.0000	1.0	0.01%	1.9	0.01%
WRKY17(WRKY)/colamp-WRKY17-DAP-Seq(GSE60143)/Homer	GCGTTGACTTTT	1e0	-2.861e-01	1.0000	9.0	0.04%	11.9	0.06%
AT1G04880(ARID)/colamp-AT1G04880-DAP-Seq(GSE60143)/Homer	AAACTATATADTATA	1e0	-2.833e-01	1.0000	90.0	0.45%	98.4	0.49%
ANAC005(NAC)/col-ANAC005-DAP-Seq(GSE60143)/Homer	WVCTTVTWNHABAAG	1e0	-2.824e-01	1.0000	522.0	2.61%	541.7	2.72%
DEAR2(AP2EREBP)/colamp-DEAR2-DAP-Seq(GSE60143)/Homer	HCACCGACAWHD	1e0	-2.737e-01	1.0000	1199.0	6.00%	1227.5	6.16%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-2.701e-01	1.0000	1263.0	6.31%	1292.7	6.49%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-2.666e-01	1.0000	454.0	2.27%	473.8	2.38%
ABR1(AP2EREBP)/colamp-ABR1-DAP-Seq(GSE60143)/Homer	AAATGGCGGCGG	1e0	-2.608e-01	1.0000	1357.0	6.78%	1388.4	6.97%
RAP26(AP2EREBP)/colamp-RAP26-DAP-Seq(GSE60143)/Homer	HDATGGCGGCGG	1e0	-2.601e-01	1.0000	1733.0	8.67%	1767.0	8.87%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-2.560e-01	1.0000	160.0	0.80%	172.4	0.87%
REB1/SacCer-Promoters/Homer	KCCGGGTAAYRR	1e0	-2.554e-01	1.0000	187.0	0.94%	200.9	1.01%
Unknown2/Arabidopsis-Promoters/Homer	AAACGACGTCGTTTT	1e0	-2.548e-01	1.0000	3.0	0.01%	4.2	0.02%
MYB3R5(MYB)/col-MYB3R5-DAP-Seq(GSE60143)/Homer	THYAACGGTHAWAWT	1e0	-2.548e-01	1.0000	72.0	0.36%	80.2	0.40%
AGL95(ND)/col-AGL95-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e0	-2.517e-01	1.0000	88.0	0.44%	97.7	0.49%
AGL13(MADS)/col-AGL13-DAP-Seq(GSE60143)/Homer	TWCCAWWTWTGGWAA	1e0	-2.476e-01	1.0000	53.0	0.27%	60.2	0.30%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-2.443e-01	1.0000	199.0	1.00%	213.6	1.07%
AT1G71450(AP2EREBP)/col-AT1G71450-DAP-Seq(GSE60143)/Homer	DHDWTGTCGGTG	1e0	-2.438e-01	1.0000	1957.0	9.79%	1995.5	10.02%
ABF1/SacCer-Promoters/Homer	CGTRNAAARTGA	1e0	-2.425e-01	1.0000	258.0	1.29%	275.0	1.38%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	-2.414e-01	1.0000	1762.0	8.81%	1799.4	9.03%
Unknown2/Drosophila-Promoters/Homer	CATCMCTA	1e0	-2.364e-01	1.0000	1663.0	8.31%	1700.7	8.54%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e0	-2.314e-01	1.0000	1360.0	6.80%	1395.1	7.00%
AGL15(MADS)/col-AGL15-DAP-Seq(GSE60143)/Homer	TTTCCHWATWDGGAA	1e0	-2.222e-01	1.0000	144.0	0.72%	157.3	0.79%
OBP3(C2C2dof)/col-OBP3-DAP-Seq(GSE60143)/Homer	NYWACTTTTT	1e0	-2.192e-01	1.0000	4927.0	24.64%	4980.9	25.00%
AGL25(MADS)/colamp-AGL25-DAP-Seq(GSE60143)/Homer	TTTCCATWTWTGGAA	1e0	-2.150e-01	1.0000	53.0	0.27%	61.6	0.31%
ANAC017(NAC)/colamp-ANAC017-DAP-Seq(GSE60143)/Homer	TMCTTGNNNNNCAAG	1e0	-2.146e-01	1.0000	81.0	0.40%	91.3	0.46%
AT1G44830(AP2EREBP)/col-AT1G44830-DAP-Seq(GSE60143)/Homer	NCCACCGACA	1e0	-2.143e-01	1.0000	363.0	1.81%	384.4	1.93%
DDF2(AP2EREBP)/col-DDF2-DAP-Seq(GSE60143)/Homer	GATGTCGRCR	1e0	-2.138e-01	1.0000	15.0	0.07%	19.9	0.10%
KANADI1(Myb)/Seedling-KAN1-ChIP-Seq(GSE48081)/Homer	ARGAATAWWN	1e0	-2.132e-01	1.0000	1215.0	6.08%	1251.6	6.28%
DREF/Drosophila-Promoters/Homer	AVYTATCGATAD	1e0	-2.131e-01	1.0000	5.0	0.03%	7.9	0.04%
LBD18(LOBAS2)/colamp-LBD18-DAP-Seq(GSE60143)/Homer	CKGAWWTTCHGS	1e0	-2.124e-01	1.0000	3630.0	18.15%	3682.4	18.48%
At5g22890(C2H2)/col-At5g22890-DAP-Seq(GSE60143)/Homer	NSAGGTKWTATCTGD	1e0	-2.106e-01	1.0000	30.0	0.15%	36.6	0.18%
FHY3(FAR1)/Arabidopsis-FHY3-ChIP-Seq(GSE30711)/Homer	HHCACGCGCBTN	1e0	-2.082e-01	1.0000	419.0	2.10%	442.1	2.22%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-2.054e-01	1.0000	192.0	0.96%	209.0	1.05%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e0	-2.013e-01	1.0000	4541.0	22.71%	4598.0	23.08%
BBX31(Orphan)/col-BBX31-DAP-Seq(GSE60143)/Homer	NAAAAAGTDA	1e0	-1.987e-01	1.0000	2386.0	11.93%	2435.9	12.23%
CRF10(AP2EREBP)/col100-CRF10-DAP-Seq(GSE60143)/Homer	DCCGCCGYHA	1e0	-1.961e-01	1.0000	1925.0	9.62%	1971.5	9.90%
VND6(NAC)/col-VND6-DAP-Seq(GSE60143)/Homer	DCTTNHTTTTYAMGY	1e0	-1.923e-01	1.0000	1133.0	5.67%	1171.7	5.88%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-1.910e-01	1.0000	113.0	0.56%	126.9	0.64%
At2g03500(G2like)/col-At2g03500-DAP-Seq(GSE60143)/Homer	WWAGAATATTCT	1e0	-1.853e-01	1.0000	233.0	1.17%	252.3	1.27%
AT1G19040(NAC)/col-AT1G19040-DAP-Seq(GSE60143)/Homer	CTTGNDNHNCAAGYW	1e0	-1.842e-01	1.0000	64.0	0.32%	74.7	0.37%
Adof1(C2C2dof)/col-Adof1-DAP-Seq(GSE60143)/Homer	NRWAAAGYDV	1e0	-1.840e-01	1.0000	4270.0	21.35%	4331.7	21.74%
AT2G20400(G2like)/colamp-AT2G20400-DAP-Seq(GSE60143)/Homer	DNVGAATATTCBNHN	1e0	-1.804e-01	1.0000	104.0	0.52%	117.7	0.59%
SOL1(CPP)/colamp-SOL1-DAP-Seq(GSE60143)/Homer	ATTTAAATHN	1e0	-1.794e-01	1.0000	1796.0	8.98%	1844.1	9.26%
dof43(C2C2dof)/colamp-dof43-DAP-Seq(GSE60143)/Homer	NAAAAAGTDA	1e0	-1.784e-01	1.0000	2216.0	11.08%	2268.6	11.39%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-1.729e-01	1.0000	211.0	1.05%	230.1	1.16%
LBD13(LOBAS2)/colamp-LBD13-DAP-Seq(GSE60143)/Homer	KCCGTNWTTTBCGGC	1e0	-1.719e-01	1.0000	1257.0	6.29%	1300.3	6.53%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-1.641e-01	1.0000	176.0	0.88%	194.8	0.98%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-1.631e-01	1.0000	264.0	1.32%	286.5	1.44%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e0	-1.626e-01	1.0000	1086.0	5.43%	1128.9	5.67%
ANAC070(NAC)/colamp-ANAC070-DAP-Seq(GSE60143)/Homer	CTTRHDNHNBAAGHW	1e0	-1.615e-01	1.0000	1137.0	5.68%	1180.3	5.92%
AtHB32(ZFHD)/col200-AtHB32-DAP-Seq(GSE60143)/Homer	CGAATTAT	1e0	-1.609e-01	1.0000	1557.0	7.79%	1606.6	8.06%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	-1.569e-01	1.0000	2874.0	14.37%	2936.7	14.74%
ERF115(AP2EREBP)/colamp-ERF115-DAP-Seq(GSE60143)/Homer	WTKRCGGCGB	1e0	-1.565e-01	1.0000	2222.0	11.11%	2279.4	11.44%
DAG2(C2C2dof)/col-DAG2-DAP-Seq(GSE60143)/Homer	WWTTHACTTTTT	1e0	-1.547e-01	1.0000	2523.0	12.62%	2583.3	12.97%
AT3G10580(MYBrelated)/colamp-AT3G10580-DAP-Seq(GSE60143)/Homer	TACCTAACWNHW	1e0	-1.543e-01	1.0000	408.0	2.04%	436.3	2.19%
AT5G66940(C2C2dof)/col-AT5G66940-DAP-Seq(GSE60143)/Homer	NNHACTTTWT	1e0	-1.524e-01	1.0000	2994.0	14.97%	3058.0	15.35%
HSF21(HSF)/col-HSF21-DAP-Seq(GSE60143)/Homer	CTTCTAGAAGMTTYW	1e0	-1.520e-01	1.0000	9.0	0.04%	13.1	0.07%
CES-1(Homeobox)/cElegans-L1-CES1-ChIP-Seq(modEncode)/Homer	AAATTSAATTTN	1e0	-1.513e-01	1.0000	606.0	3.03%	640.1	3.21%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-1.503e-01	1.0000	915.0	4.58%	956.0	4.80%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e0	-1.499e-01	1.0000	1463.0	7.32%	1513.4	7.60%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e0	-1.489e-01	1.0000	193.0	0.97%	213.6	1.07%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-1.486e-01	1.0000	257.0	1.29%	280.6	1.41%
HAP3(CCAATHAP3)/col-HAP3-DAP-Seq(GSE60143)/Homer	TGATGGAW	1e0	-1.478e-01	1.0000	330.0	1.65%	356.6	1.79%
SeqBias: G/A bias	RRRRRRRRRR	1e0	-1.432e-01	1.0000	19988.0	99.94%	19913.0	99.96%
HSFB3(HSF)/colamp-HSFB3-DAP-Seq(GSE60143)/Homer	TTCTAGAAGMTTHTW	1e0	-1.414e-01	1.0000	5.0	0.03%	8.6	0.04%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-1.371e-01	1.0000	438.0	2.19%	469.4	2.36%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-1.358e-01	1.0000	433.0	2.17%	464.8	2.33%
LIN-15B(Zf)/cElegans-L3-LIN15B-ChIP-Seq(modEncode)/Homer	CARTGGAGCGCRYTTGCATT	1e0	-1.327e-01	1.0000	1.0	0.01%	2.0	0.01%
At4g38000(C2C2dof)/col-At4g38000-DAP-Seq(GSE60143)/Homer	WWWTWACTTTTT	1e0	-1.299e-01	1.0000	1649.0	8.24%	1706.8	8.57%
ERF15(AP2EREBP)/colamp-ERF15-DAP-Seq(GSE60143)/Homer	WDHAGCMGCCAT	1e0	-1.284e-01	1.0000	3424.0	17.12%	3498.4	17.56%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-1.281e-01	1.0000	2192.0	10.96%	2256.7	11.33%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-1.272e-01	1.0000	1110.0	5.55%	1159.0	5.82%
At1g74840(MYBrelated)/col100-At1g74840-DAP-Seq(GSE60143)/Homer	YHTTATCCAWWT	1e0	-1.255e-01	1.0000	943.0	4.71%	989.8	4.97%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-1.236e-01	1.0000	112.0	0.56%	129.1	0.65%
EIN3(EIL)/col-EIN3-DAP-Seq(GSE60143)/Homer	ARATTCAATGWATYT	1e0	-1.224e-01	1.0000	139.0	0.69%	158.6	0.80%
AT2G15740(C2H2)/col-AT2G15740-DAP-Seq(GSE60143)/Homer	DHNDWATCGATD	1e0	-1.159e-01	1.0000	664.0	3.32%	705.8	3.54%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e0	-1.119e-01	1.0000	1144.0	5.72%	1197.3	6.01%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e0	-1.071e-01	1.0000	2258.0	11.29%	2329.7	11.69%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-1.061e-01	1.0000	178.0	0.89%	201.3	1.01%
PLT1(AP2EREBP)/colamp-PLT1-DAP-Seq(GSE60143)/Homer	GCACGAWTYCCGAGG	1e0	-1.050e-01	1.0000	84.0	0.42%	100.7	0.51%
Unknown3/Arabidopsis-Promoters/Homer	AYTAAACCGG	1e0	-1.018e-01	1.0000	156.0	0.78%	178.5	0.90%
At3g09600(MYBrelated)/colamp-At3g09600-DAP-Seq(GSE60143)/Homer	AAAATATCTT	1e0	-1.017e-01	1.0000	464.0	2.32%	501.5	2.52%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-1.016e-01	1.0000	238.0	1.19%	265.7	1.33%
Replumless(BLH)/Arabidopsis-RPL.GFP-ChIP-Seq(GSE78727)/Homer	HGTCWHATCA	1e0	-1.004e-01	1.0000	1655.0	8.28%	1720.8	8.64%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	-9.893e-02	1.0000	31.0	0.15%	41.2	0.21%
AT3G10030(Trihelix)/colamp-AT3G10030-DAP-Seq(GSE60143)/Homer	GCCGTTAA	1e0	-9.479e-02	1.0000	697.0	3.48%	743.6	3.73%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-9.477e-02	1.0000	298.0	1.49%	329.8	1.66%
AT3G52440(C2C2dof)/colamp-AT3G52440-DAP-Seq(GSE60143)/Homer	DTHACTTTTT	1e0	-9.434e-02	1.0000	3593.0	17.96%	3681.5	18.48%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	-9.305e-02	1.0000	3.0	0.01%	6.1	0.03%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e0	-9.063e-02	1.0000	4926.0	24.63%	5023.0	25.21%
Unknown3/Drosophila-Promoters/Homer	ACVAKCTGGCAGCGC	1e0	-9.050e-02	1.0000	93.0	0.46%	111.7	0.56%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-8.950e-02	1.0000	6168.0	30.84%	6269.1	31.47%
MYB41(MYB)/col-MYB41-DAP-Seq(GSE60143)/Homer	BYTYACCTAA	1e0	-8.904e-02	1.0000	434.0	2.17%	472.4	2.37%
COG1(C2C2dof)/col-COG1-DAP-Seq(GSE60143)/Homer	DAAAAAGTGA	1e0	-8.794e-02	1.0000	2126.0	10.63%	2202.3	11.06%
At3g24120(G2like)/col-At3g24120-DAP-Seq(GSE60143)/Homer	NWWAGMATMW	1e0	-8.631e-02	1.0000	3786.0	18.93%	3879.1	19.47%
HSFC1(HSF)/col-HSFC1-DAP-Seq(GSE60143)/Homer	HTTCTAGAADCTTCT	1e0	-8.444e-02	1.0000	158.0	0.79%	182.4	0.92%
AT2G28810(C2C2dof)/colamp-AT2G28810-DAP-Seq(GSE60143)/Homer	VAAAAAGTWA	1e0	-8.400e-02	1.0000	3770.0	18.85%	3864.4	19.40%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-8.347e-02	1.0000	304.0	1.52%	337.4	1.69%
At1g69690(TCP)/colamp-At1g69690-DAP-Seq(GSE60143)/Homer	NHGTGGGGCCCACHW	1e0	-8.216e-02	1.0000	263.0	1.31%	294.4	1.48%
Tal1	CATCTG	1e0	-7.958e-02	1.0000	2110.0	10.55%	2189.8	10.99%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-7.937e-02	1.0000	330.0	1.65%	365.2	1.83%
At5g18450(AP2EREBP)/col-At5g18450-DAP-Seq(GSE60143)/Homer	CACCGCTT	1e0	-7.809e-02	1.0000	2359.0	11.79%	2442.0	12.26%
AGL6(MADS)/col-AGL6-DAP-Seq(GSE60143)/Homer	TTWCCWWAWWDGGWA	1e0	-7.749e-02	1.0000	123.0	0.61%	145.8	0.73%
TSO1(CPP)/col-TSO1-DAP-Seq(GSE60143)/Homer	RAATTTRAAW	1e0	-7.356e-02	1.0000	118.0	0.59%	140.5	0.71%
CELF2(RRM)/JSL1-CELF2-CLIP-Seq(GSE71264)/Homer	RGTGTCAG	1e0	-7.242e-02	1.0000	407.0	2.04%	448.0	2.25%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-7.156e-02	1.0000	2602.0	13.01%	2691.6	13.51%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-7.132e-02	1.0000	518.0	2.59%	563.9	2.83%
TCP17(TCP)/col-TCP17-DAP-Seq(GSE60143)/Homer	GTGGTCCCCA	1e0	-6.805e-02	1.0000	27.0	0.14%	38.3	0.19%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e0	-6.726e-02	1.0000	1625.0	8.12%	1701.3	8.54%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-6.720e-02	1.0000	384.0	1.92%	424.1	2.13%
RLR1?/SacCer-Promoters/Homer	WTTTTCYYTTTT	1e0	-6.555e-02	1.0000	914.0	4.57%	974.3	4.89%
AT4G12670(MYBrelated)/col-AT4G12670-DAP-Seq(GSE60143)/Homer	AGGGTTTAGGGTTTA	1e0	-6.400e-02	1.0000	1.0	0.01%	3.3	0.02%
MYB39(MYB)/col-MYB39-DAP-Seq(GSE60143)/Homer	WWAARKTAGGTGRAA	1e0	-6.376e-02	1.0000	116.0	0.58%	139.9	0.70%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e0	-6.226e-02	1.0000	1016.0	5.08%	1080.2	5.42%
AT3G12130(C3H)/colamp-AT3G12130-DAP-Seq(GSE60143)/Homer	TMACTTTTTV	1e0	-6.169e-02	1.0000	3743.0	18.71%	3849.8	19.32%
GEI-11(Myb?)/cElegans-L4-GEI11-ChIP-Seq(modEncode)/Homer	CCGACAYYTYACGGG	1e0	-6.062e-02	1.0000	53.0	0.27%	69.1	0.35%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-6.001e-02	1.0000	67.0	0.34%	85.7	0.43%
AGL16(MADS)/col-AGL16-DAP-Seq(GSE60143)/Homer	TWCCHWATWDGGAAA	1e0	-5.634e-02	1.0000	88.0	0.44%	109.4	0.55%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e0	-5.632e-02	1.0000	814.0	4.07%	874.1	4.39%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e0	-5.600e-02	1.0000	497.0	2.48%	545.8	2.74%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-5.547e-02	1.0000	1259.0	6.30%	1332.1	6.69%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-5.441e-02	1.0000	604.0	3.02%	657.1	3.30%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-5.413e-02	1.0000	1445.0	7.22%	1523.5	7.65%
At2g45680(TCP)/colamp-At2g45680-DAP-Seq(GSE60143)/Homer	GTGGGNCCCACNDND	1e0	-5.117e-02	1.0000	67.0	0.34%	86.4	0.43%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e0	-5.085e-02	1.0000	625.0	3.12%	680.7	3.42%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-4.841e-02	1.0000	6.0	0.03%	12.4	0.06%
MYB62(MYB)/colamp-MYB62-DAP-Seq(GSE60143)/Homer	NTACCTAACT	1e0	-4.775e-02	1.0000	1482.0	7.41%	1564.4	7.85%
At2g41835(C2H2)/col-At2g41835-DAP-Seq(GSE60143)/Homer	TTTGAAAA	1e0	-4.752e-02	1.0000	671.0	3.36%	729.9	3.66%
Unknown6/Drosophila-Promoters/Homer	AATTTTAAAA	1e0	-4.727e-02	1.0000	861.0	4.30%	926.6	4.65%
AT5G63260(C3H)/col-AT5G63260-DAP-Seq(GSE60143)/Homer	RAAAAAGTRA	1e0	-4.557e-02	1.0000	3707.0	18.54%	3824.3	19.20%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-4.553e-02	1.0000	20.0	0.10%	31.0	0.16%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-4.491e-02	1.0000	1681.0	8.40%	1769.4	8.88%
HLH-1(bHLH)/cElegans-Embryo-HLH1-ChIP-Seq(modEncode)/Homer	RACAGCTGTTBH	1e0	-4.258e-02	1.0000	1077.0	5.38%	1151.4	5.78%
ARF2(ARF)/col-ARF2-DAP-Seq(GSE60143)/Homer	TTGTCGGMWN	1e0	-4.051e-02	1.0000	3997.0	19.98%	4121.1	20.69%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-4.038e-02	1.0000	402.0	2.01%	450.9	2.26%
dof42(C2C2dof)/col-dof42-DAP-Seq(GSE60143)/Homer	AAAAAGGC	1e0	-4.033e-02	1.0000	859.0	4.29%	927.9	4.66%
OBP1(C2C2dof)/col-OBP1-DAP-Seq(GSE60143)/Homer	NHHACTTTWT	1e0	-3.911e-02	1.0000	4312.0	21.56%	4440.0	22.29%
LBD2(LOBAS2)/colamp-LBD2-DAP-Seq(GSE60143)/Homer	TCCGAWTTTTTCGGN	1e0	-3.871e-02	1.0000	295.0	1.47%	337.9	1.70%
CDM1(C3H)/colamp-CDM1-DAP-Seq(GSE60143)/Homer	CCGAWAWTWTCGGAN	1e0	-3.862e-02	1.0000	50.0	0.25%	68.8	0.35%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-3.804e-02	1.0000	292.0	1.46%	334.6	1.68%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e0	-3.644e-02	1.0000	1380.0	6.90%	1466.1	7.36%
HSFA6B(HSF)/colamp-HSFA6B-DAP-Seq(GSE60143)/Homer	NTTCTAGAANHTTCT	1e0	-3.644e-02	1.0000	413.0	2.07%	463.4	2.33%
ERF105(AP2EREBP)/colamp-ERF105-DAP-Seq(GSE60143)/Homer	TGGCGGCT	1e0	-3.566e-02	1.0000	2222.0	11.11%	2327.5	11.68%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e0	-3.541e-02	1.0000	3615.0	18.07%	3741.0	18.78%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-3.495e-02	1.0000	598.0	2.99%	658.2	3.30%
AT2G31460(REMB3)/col-AT2G31460-DAP-Seq(GSE60143)/Homer	WNWARWDGAAATGAT	1e0	-3.391e-02	1.0000	546.0	2.73%	604.0	3.03%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-3.304e-02	1.0000	4525.0	22.62%	4661.1	23.40%
TRP2(MYBrelated)/colamp-TRP2-DAP-Seq(GSE60143)/Homer	TAAACCCT	1e0	-3.261e-02	1.0000	161.0	0.80%	194.1	0.97%
dof24(C2C2dof)/col-dof24-DAP-Seq(GSE60143)/Homer	TWMCTTTTTG	1e0	-3.244e-02	1.0000	2979.0	14.89%	3099.5	15.56%
At1g68670(G2like)/colamp-At1g68670-DAP-Seq(GSE60143)/Homer	WNWWHNRAAGATTCT	1e0	-3.154e-02	1.0000	381.0	1.91%	431.1	2.16%
TCP1(TCP)/col-TCP1-DAP-Seq(GSE60143)/Homer	GGGGGCCCMMCN	1e0	-3.104e-02	1.0000	331.0	1.65%	378.9	1.90%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-3.076e-02	1.0000	1313.0	6.57%	1401.6	7.04%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-3.068e-02	1.0000	146.0	0.73%	178.2	0.89%
SeqBias: GA-repeat	GAGAGAGAGA	1e0	-2.887e-02	1.0000	11040.0	55.20%	11184.0	56.14%
At2g33710(AP2EREBP)/colamp-At2g33710-DAP-Seq(GSE60143)/Homer	WTKGCGGCKR	1e0	-2.876e-02	1.0000	2609.0	13.05%	2727.2	13.69%
caudal(Homeobox)/Drosophila-Embryos-ChIP-Chip(modEncode)/Homer	GGYCATAAAW	1e0	-2.841e-02	1.0000	1008.0	5.04%	1088.2	5.46%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e0	-2.787e-02	1.0000	1376.0	6.88%	1468.2	7.37%
AT1G76870(Trihelix)/col-AT1G76870-DAP-Seq(GSE60143)/Homer	AAAACCRGWW	1e0	-2.787e-02	1.0000	455.0	2.27%	511.5	2.57%
JGL(C2H2)/col-JGL-DAP-Seq(GSE60143)/Homer	ACYTTCAGTT	1e0	-2.675e-02	1.0000	2377.0	11.88%	2493.2	12.52%
SPL3(SBP)/colamp-SPL3-DAP-Seq(GSE60143)/Homer	WDTTGTACGGAH	1e0	-2.649e-02	1.0000	17.0	0.08%	29.9	0.15%
E2FA(E2FDP)/colamp-E2FA-DAP-Seq(GSE60143)/Homer	WWTGGCGCCAWWWNN	1e0	-2.551e-02	1.0000	663.0	3.31%	731.5	3.67%
AIL7(AP2EREBP)/colamp-AIL7-DAP-Seq(GSE60143)/Homer	KCACRAWTYYCGAGG	1e0	-2.533e-02	1.0000	485.0	2.43%	544.1	2.73%
SeqBias: polyC-repeat	CCCCCCCCCC	1e0	-2.508e-02	1.0000	19424.0	97.12%	19410.2	97.43%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e0	-2.428e-02	1.0000	266.0	1.33%	311.2	1.56%
MYB74(MYB)/colamp-MYB74-DAP-Seq(GSE60143)/Homer	YYYACCTACCWH	1e0	-2.335e-02	1.0000	634.0	3.17%	702.8	3.53%
VRN1(ABI3VP1)/col-VRN1-DAP-Seq(GSE60143)/Homer	TTTTTTTTTT	1e0	-2.329e-02	1.0000	400.0	2.00%	455.3	2.29%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e0	-2.325e-02	1.0000	1784.0	8.92%	1891.2	9.49%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e0	-2.233e-02	1.0000	1190.0	5.95%	1281.8	6.43%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-2.157e-02	1.0000	166.0	0.83%	203.4	1.02%
TCP7(TCP)/col-TCP7-DAP-Seq(GSE60143)/Homer	GTGGGSCCCACHHNN	1e0	-2.141e-02	1.0000	689.0	3.45%	761.7	3.82%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-2.139e-02	1.0000	384.0	1.92%	439.6	2.21%
OBP4(C2C2dof)/col-OBP4-DAP-Seq(GSE60143)/Homer	WTTHACTTTTTB	1e0	-2.032e-02	1.0000	2157.0	10.79%	2276.9	11.43%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-1.978e-02	1.0000	4187.0	20.94%	4338.3	21.78%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-1.929e-02	1.0000	352.0	1.76%	406.1	2.04%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-1.793e-02	1.0000	397.0	1.98%	455.8	2.29%
BOS1(MYB)/col-BOS1-DAP-Seq(GSE60143)/Homer	NNRCCTAACT	1e0	-1.774e-02	1.0000	1090.0	5.45%	1182.8	5.94%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	-1.739e-02	1.0000	4.0	0.02%	11.8	0.06%
IDD2(C2H2)/colamp-IDD2-DAP-Seq(GSE60143)/Homer	HAVAAAAMGACAAAA	1e0	-1.718e-02	1.0000	110.0	0.55%	142.9	0.72%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-1.715e-02	1.0000	3021.0	15.10%	3161.1	15.87%
MYB65(MYB)/colamp-MYB65-DAP-Seq(GSE60143)/Homer	RACNGTTA	1e0	-1.608e-02	1.0000	1577.0	7.89%	1687.9	8.47%
AT4G27900(C2C2COlike)/col-AT4G27900-DAP-Seq(GSE60143)/Homer	TCTCVACCGTTSATT	1e0	-1.555e-02	1.0000	1.0	0.01%	5.9	0.03%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-1.537e-02	1.0000	575.0	2.88%	646.5	3.25%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-1.533e-02	1.0000	371.0	1.85%	429.8	2.16%
REM19(REM)/colamp-REM19-DAP-Seq(GSE60143)/Homer	AAAAAAAA	1e0	-1.486e-02	1.0000	1006.0	5.03%	1098.6	5.51%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-1.398e-02	1.0000	698.0	3.49%	777.1	3.90%
ASL18(LOBAS2)/colamp-ASL18-DAP-Seq(GSE60143)/Homer	CCGGAAAWTCMGGAR	1e0	-1.384e-02	1.0000	2345.0	11.72%	2478.5	12.44%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-1.374e-02	1.0000	2382.0	11.91%	2516.2	12.63%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-1.324e-02	1.0000	2294.0	11.47%	2427.0	12.18%
MYB17(MYB)/colamp-MYB17-DAP-Seq(GSE60143)/Homer	GGTAGGTGRG	1e0	-1.260e-02	1.0000	632.0	3.16%	709.5	3.56%
At3g45610(C2C2dof)/col-At3g45610-DAP-Seq(GSE60143)/Homer	TWACTTTTTS	1e0	-1.241e-02	1.0000	2311.0	11.55%	2446.2	12.28%
SeqBias: C/A-bias	MMMMMMMMMM	1e0	-1.240e-02	1.0000	19932.0	99.66%	19876.6	99.77%
AGL63(MADS)/col-AGL63-DAP-Seq(GSE60143)/Homer	TTCCAAWWWTGG	1e0	-1.162e-02	1.0000	1095.0	5.47%	1195.1	6.00%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	-1.116e-02	1.0000	54.0	0.27%	79.7	0.40%
Unknown4/Arabidopsis-Promoters/Homer	CKTCKTCTTY	1e0	-1.077e-02	1.0000	1038.0	5.19%	1137.9	5.71%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-1.017e-02	1.0000	1461.0	7.31%	1577.7	7.92%
LBD19(LOBAS2)/colamp-LBD19-DAP-Seq(GSE60143)/Homer	CCKGAAWTTCMGGAW	1e0	-9.766e-03	1.0000	2533.0	12.67%	2679.0	13.45%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e0	-8.889e-03	1.0000	396.0	1.98%	463.0	2.32%
MYB83(MYB)/colamp-MYB83-DAP-Seq(GSE60143)/Homer	CACCAACCWH	1e0	-8.639e-03	1.0000	2117.0	10.59%	2256.0	11.32%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-8.637e-03	1.0000	127.0	0.64%	166.7	0.84%
MYB49(MYB)/col-MYB49-DAP-Seq(GSE60143)/Homer	ARKTAGGTRR	1e0	-7.953e-03	1.0000	1150.0	5.75%	1259.1	6.32%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e0	-7.871e-03	1.0000	43.0	0.21%	67.8	0.34%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e0	-7.449e-03	1.0000	2029.0	10.14%	2169.9	10.89%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-7.088e-03	1.0000	1272.0	6.36%	1388.2	6.97%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-6.842e-03	1.0000	1764.0	8.82%	1898.6	9.53%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e0	-6.736e-03	1.0000	706.0	3.53%	796.2	4.00%
dof45(C2C2dof)/col-dof45-DAP-Seq(GSE60143)/Homer	NVAWAAAGTN	1e0	-6.572e-03	1.0000	3803.0	19.02%	3983.3	19.99%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e0	-6.484e-03	1.0000	1114.0	5.57%	1225.8	6.15%
AT1G47655(C2C2dof)/colamp-AT1G47655-DAP-Seq(GSE60143)/Homer	YHACTTTTTS	1e0	-6.481e-03	1.0000	5502.0	27.51%	5702.1	28.62%
SFP1/SacCer-Promoters/Homer	DDAAAAATTTTY	1e0	-6.458e-03	1.0000	65.0	0.33%	95.1	0.48%
MYB92(MYB)/colamp-MYB92-DAP-Seq(GSE60143)/Homer	GGTAGGTR	1e0	-6.154e-03	1.0000	1094.0	5.47%	1205.3	6.05%
MYB13(MYB)/col-MYB13-DAP-Seq(GSE60143)/Homer	HYCACCWACCHH	1e0	-5.791e-03	1.0000	792.0	3.96%	889.1	4.46%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e0	-5.696e-03	1.0000	3119.0	15.60%	3291.8	16.52%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-5.488e-03	1.0000	597.0	2.99%	683.5	3.43%
Unknown1/Arabidopsis-Promoters/Homer	RGGGTAWWWTHGTAA	1e0	-5.328e-03	1.0000	85.0	0.43%	121.0	0.61%
DEL2(E2FDP)/col-DEL2-DAP-Seq(GSE60143)/Homer	WTTTCSCGCC	1e0	-5.322e-03	1.0000	547.0	2.73%	630.1	3.16%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-4.839e-03	1.0000	782.0	3.91%	881.1	4.42%
AT3G09735(S1Falike)/col-AT3G09735-DAP-Seq(GSE60143)/Homer	TTCTAGAANMTTCTA	1e0	-4.676e-03	1.0000	341.0	1.70%	409.9	2.06%
MYB67(MYB)/col-MYB67-DAP-Seq(GSE60143)/Homer	YYYACCTAAC	1e0	-4.569e-03	1.0000	1012.0	5.06%	1124.2	5.64%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e0	-4.440e-03	1.0000	3631.0	18.15%	3819.1	19.17%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e0	-4.125e-03	1.0000	2240.0	11.20%	2399.1	12.04%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-3.424e-03	1.0000	3372.0	16.86%	3562.9	17.88%
AT4G00250(GeBP)/col-AT4G00250-DAP-Seq(GSE60143)/Homer	WDTGGATAAKRT	1e0	-3.114e-03	1.0000	748.0	3.74%	851.3	4.27%
AT4G26030(C2H2)/col-AT4G26030-DAP-Seq(GSE60143)/Homer	BYYACCWACY	1e0	-2.790e-03	1.0000	1059.0	5.29%	1181.0	5.93%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e0	-2.706e-03	1.0000	5237.0	26.19%	5461.4	27.41%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-2.566e-03	1.0000	296.0	1.48%	365.2	1.83%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e0	-2.226e-03	1.0000	1527.0	7.63%	1674.4	8.40%
MYB3R1(MYB)/col-MYB3R1-DAP-Seq(GSE60143)/Homer	WWDTDACCGTTR	1e0	-2.223e-03	1.0000	226.0	1.13%	288.9	1.45%
GRF9(GRF)/colamp-GRF9-DAP-Seq(GSE60143)/Homer	NWCTGACANNNNNNN	1e0	-2.129e-03	1.0000	1135.0	5.67%	1265.3	6.35%
ATY19(MYB)/col-ATY19-DAP-Seq(GSE60143)/Homer	YYCACCWACCAT	1e0	-2.113e-03	1.0000	702.0	3.51%	807.6	4.05%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-1.815e-03	1.0000	647.0	3.23%	751.0	3.77%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-1.777e-03	1.0000	158.0	0.79%	212.1	1.06%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e0	-1.748e-03	1.0000	421.0	2.10%	506.3	2.54%
SVP(MADS)/col-SVP-DAP-Seq(GSE60143)/Homer	ANTTWCCHAATTTGG	1e0	-1.669e-03	1.0000	620.0	3.10%	722.4	3.63%
SeqBias: CA-repeat	CACACACACA	1e0	-1.631e-03	1.0000	8320.0	41.60%	8576.2	43.05%
DEL1(E2FDP)/colamp-DEL1-DAP-Seq(GSE60143)/Homer	TTCCCGCCAA	1e0	-1.602e-03	1.0000	8.0	0.04%	23.9	0.12%
HSF3(HSF)/colamp-HSF3-DAP-Seq(GSE60143)/Homer	NTTCTAGAAKCTTCT	1e0	-1.528e-03	1.0000	919.0	4.59%	1042.9	5.24%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-1.439e-03	1.0000	678.0	3.39%	786.5	3.95%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-1.425e-03	1.0000	65.0	0.33%	102.4	0.51%
AT5G60130(ABI3VP1)/col-AT5G60130-DAP-Seq(GSE60143)/Homer	WTTYTAAGVAAA	1e0	-1.292e-03	1.0000	2630.0	13.15%	2825.9	14.19%
MYB81(MYB)/col-MYB81-DAP-Seq(GSE60143)/Homer	NWAACSGWTWNN	1e0	-1.161e-03	1.0000	2114.0	10.57%	2295.3	11.52%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-1.133e-03	1.0000	65.0	0.33%	103.1	0.52%
MYB99(MYB)/colamp-MYB99-DAP-Seq(GSE60143)/Homer	GGTAGGTG	1e0	-1.095e-03	1.0000	960.0	4.80%	1090.2	5.47%
At1g64620(C2C2dof)/colamp-At1g64620-DAP-Seq(GSE60143)/Homer	CACTTTTT	1e0	-9.950e-04	1.0000	2116.0	10.58%	2300.3	11.55%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e0	-9.710e-04	1.0000	1086.0	5.43%	1225.4	6.15%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e0	-9.530e-04	1.0000	1117.0	5.58%	1258.3	6.32%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-8.470e-04	1.0000	1702.0	8.51%	1873.6	9.40%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-6.030e-04	1.0000	1640.0	8.20%	1814.9	9.11%
MYB51(MYB)/col-MYB51-DAP-Seq(GSE60143)/Homer	GGTAGGTG	1e0	-6.000e-04	1.0000	840.0	4.20%	970.2	4.87%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-5.630e-04	1.0000	1487.0	7.43%	1655.5	8.31%
AT5G23930(mTERF)/col-AT5G23930-DAP-Seq(GSE60143)/Homer	GGCGGCTG	1e0	-5.130e-04	1.0000	2637.0	13.18%	2851.6	14.31%
MYB40(MYB)/col-MYB40-DAP-Seq(GSE60143)/Homer	TGGTAGGTRARA	1e0	-5.020e-04	1.0000	343.0	1.71%	431.3	2.16%
AtGRF6(GRF)/col-AtGRF6-DAP-Seq(GSE60143)/Homer	NTGTCAGADNNNNNN	1e0	-4.120e-04	1.0000	1491.0	7.46%	1664.7	8.36%
MYB58(MYB)/colamp-MYB58-DAP-Seq(GSE60143)/Homer	YYYACCWACC	1e0	-3.950e-04	1.0000	1001.0	5.00%	1147.4	5.76%
bZIP18(bZIP)/colamp-bZIP18-DAP-Seq(GSE60143)/Homer	KGMCAGCTND	1e0	-3.750e-04	1.0000	8128.0	40.64%	8426.6	42.30%
ARF16(ARF)/col-ARF16-DAP-Seq(GSE60143)/Homer	ATTTTACGAT	1e0	-3.730e-04	1.0000	93.0	0.46%	143.3	0.72%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-3.480e-04	1.0000	1731.0	8.65%	1918.1	9.63%
MYB77(MYB)/col-MYB77-DAP-Seq(GSE60143)/Homer	NYAACBGYMC	1e0	-3.130e-04	1.0000	1873.0	9.37%	2068.4	10.38%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-2.890e-04	1.0000	830.0	4.15%	968.8	4.86%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-2.880e-04	1.0000	941.0	4.71%	1087.8	5.46%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e0	-2.700e-04	1.0000	2127.0	10.63%	2335.9	11.73%
SOC1(MADS)/Seedling-SOC1-ChIP-Seq(GSE45846)/Homer	TWCCAWWTWTGG	1e0	-2.490e-04	1.0000	423.0	2.11%	526.8	2.64%
MYB30(MYB)/colamp-MYB30-DAP-Seq(GSE60143)/Homer	AGGTAGTTGG	1e0	-2.450e-04	1.0000	1363.0	6.82%	1537.4	7.72%
At1g19000(MYBrelated)/colamp-At1g19000-DAP-Seq(GSE60143)/Homer	WWTGGATAADDT	1e0	-2.370e-04	1.0000	1101.0	5.50%	1260.5	6.33%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-2.250e-04	1.0000	1377.0	6.88%	1554.0	7.80%
Initiator/Drosophila-Promoters/Homer	NTCAGTYG	1e0	-2.240e-04	1.0000	3268.0	16.34%	3517.9	17.66%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-2.140e-04	1.0000	103.0	0.52%	158.9	0.80%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e0	-2.070e-04	1.0000	707.0	3.54%	839.5	4.21%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-2.030e-04	1.0000	3654.0	18.27%	3916.0	19.66%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e0	-1.700e-04	1.0000	2107.0	10.54%	2322.4	11.66%
MYB55(MYB)/colamp-MYB55-DAP-Seq(GSE60143)/Homer	YACCWAMC	1e0	-1.630e-04	1.0000	1183.0	5.92%	1352.9	6.79%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e0	-1.380e-04	1.0000	2504.0	12.52%	2739.0	13.75%
AT1G24250(Orphan)/col-AT1G24250-DAP-Seq(GSE60143)/Homer	KTDGTTGGTDGTTGG	1e0	-1.290e-04	1.0000	247.0	1.23%	332.4	1.67%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-1.120e-04	1.0000	885.0	4.42%	1038.5	5.21%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-1.100e-04	1.0000	1378.0	6.89%	1564.6	7.85%
At5g62940(C2C2dof)/col-At5g62940-DAP-Seq(GSE60143)/Homer	WHWHHACTTTTT	1e0	-1.090e-04	1.0000	5130.0	25.65%	5434.6	27.28%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-8.100e-05	1.0000	3484.0	17.42%	3759.4	18.87%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e0	-4.100e-05	1.0000	364.0	1.82%	474.5	2.38%
MYB3R4(MYB)/col-MYB3R4-DAP-Seq(GSE60143)/Homer	AWWTAACCGTTR	1e0	-3.900e-05	1.0000	108.0	0.54%	172.3	0.86%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-3.900e-05	1.0000	2748.0	13.74%	3013.2	15.13%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e0	-3.100e-05	1.0000	1349.0	6.74%	1550.2	7.78%
ATY13(MYB)/col-ATY13-DAP-Seq(GSE60143)/Homer	YYYAACYRHH	1e0	-3.000e-05	1.0000	4423.0	22.12%	4741.1	23.80%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-2.900e-05	1.0000	50.0	0.25%	97.0	0.49%
MYB10(MYB)/col-MYB10-DAP-Seq(GSE60143)/Homer	YCCACCTACCHH	1e0	-2.700e-05	1.0000	379.0	1.90%	494.5	2.48%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	-2.600e-05	1.0000	478.0	2.39%	606.2	3.04%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-2.100e-05	1.0000	1082.0	5.41%	1269.1	6.37%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e0	-1.800e-05	1.0000	168.0	0.84%	250.7	1.26%
AT5G61620(MYBrelated)/colamp-AT5G61620-DAP-Seq(GSE60143)/Homer	CTTATCCA	1e0	-1.800e-05	1.0000	1995.0	9.98%	2240.3	11.25%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-1.700e-05	1.0000	172.0	0.86%	255.4	1.28%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e0	-1.700e-05	1.0000	376.0	1.88%	494.5	2.48%
MYB70(MYB)/col-MYB70-DAP-Seq(GSE60143)/Homer	WTAACNGTTA	1e0	-1.100e-05	1.0000	2141.0	10.71%	2400.2	12.05%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-9.000e-06	1.0000	1077.0	5.38%	1273.2	6.39%
MYB73(MYB)/col-MYB73-DAP-Seq(GSE60143)/Homer	NNNNHAACNGHHDHN	1e0	-9.000e-06	1.0000	2857.0	14.29%	3151.4	15.82%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-8.000e-06	1.0000	1479.0	7.40%	1705.9	8.56%
SEP3(MADS)/Arabidoposis-Flower-Sep3-ChIP-Seq/Homer	CCAAAAAGGG	1e0	-7.000e-06	1.0000	1658.0	8.29%	1897.5	9.52%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-6.000e-06	1.0000	829.0	4.15%	1008.9	5.06%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-5.000e-06	1.0000	988.0	4.94%	1182.6	5.94%
MYB4(MYB)/col200-MYB4-DAP-Seq(GSE60143)/Homer	WAGKTAGGTARR	1e0	-5.000e-06	1.0000	560.0	2.80%	712.9	3.58%
AT5G56840(MYBrelated)/colamp-AT5G56840-DAP-Seq(GSE60143)/Homer	TGGATAAGGT	1e0	-4.000e-06	1.0000	1813.0	9.06%	2070.7	10.39%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e0	-3.000e-06	1.0000	913.0	4.57%	1106.7	5.56%
MYB63(MYB)/col-MYB63-DAP-Seq(GSE60143)/Homer	BHYACCWACCHH	1e0	-2.000e-06	1.0000	431.0	2.15%	573.2	2.88%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-1.000e-06	1.0000	2769.0	13.84%	3088.3	15.50%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-1.000e-06	1.0000	992.0	4.96%	1202.1	6.03%
At5g47390(MYBrelated)/col-At5g47390-DAP-Seq(GSE60143)/Homer	CTTATCCA	1e0	-1.000e-06	1.0000	1771.0	8.86%	2042.1	10.25%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-1.000e-06	1.0000	1084.0	5.42%	1304.8	6.55%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-1.000e-06	1.0000	179.0	0.90%	280.0	1.41%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-1.000e-06	1.0000	431.0	2.15%	580.1	2.91%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-0.000e+00	1.0000	350.0	1.75%	489.9	2.46%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e0	-0.000e+00	1.0000	7287.0	36.44%	7738.1	38.84%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e0	-0.000e+00	1.0000	2651.0	13.26%	2990.4	15.01%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-0.000e+00	1.0000	1003.0	5.01%	1230.1	6.17%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	-0.000e+00	1.0000	909.0	4.54%	1129.4	5.67%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-0.000e+00	1.0000	2768.0	13.84%	3128.9	15.71%
PQM-1(?)/cElegans-L3-ChIP-Seq(modEncode)/Homer	ACTGATAAGA	1e0	-0.000e+00	1.0000	861.0	4.30%	1095.0	5.50%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-0.000e+00	1.0000	2018.0	10.09%	2357.0	11.83%
At5g08520(MYBrelated)/colamp-At5g08520-DAP-Seq(GSE60143)/Homer	ADBSTTATCY	1e0	-0.000e+00	1.0000	1796.0	8.98%	2133.7	10.71%
AT5G02460(C2C2dof)/col-AT5G02460-DAP-Seq(GSE60143)/Homer	CHCCTTTT	1e0	-0.000e+00	1.0000	3143.0	15.72%	3564.5	17.89%
AARE(HLH)/mES-cMyc-ChIP-Seq/Homer	GATTGCATCA	1e0	-0.000e+00	1.0000	516.0	2.58%	716.0	3.59%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-0.000e+00	1.0000	384.0	1.92%	565.9	2.84%
ELT-3(Gata)/cElegans-L1-ELT3-ChIP-Seq(modEncode)/Homer	AWTGATAAGA	1e0	-0.000e+00	1.0000	856.0	4.28%	1114.7	5.60%
MYB101(MYB)/colamp-MYB101-DAP-Seq(GSE60143)/Homer	TAACNRMY	1e0	-0.000e+00	1.0000	2865.0	14.32%	3293.9	16.53%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-0.000e+00	1.0000	1507.0	7.54%	1845.3	9.26%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-0.000e+00	1.0000	1254.0	6.27%	1574.6	7.90%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-0.000e+00	1.0000	1540.0	7.70%	2134.5	10.71%
At5g05790(MYBrelated)/col-At5g05790-DAP-Seq(GSE60143)/Homer	AYCTTATC	1e0	-0.000e+00	1.0000	1744.0	8.72%	2235.0	11.22%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-0.000e+00	1.0000	203.0	1.01%	350.7	1.76%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e0	-0.000e+00	1.0000	2270.0	11.35%	2733.6	13.72%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-0.000e+00	1.0000	2190.0	10.95%	2825.9	14.19%
At1g49010(MYBrelated)/col-At1g49010-DAP-Seq(GSE60143)/Homer	RGATAASNTT	1e0	-0.000e+00	1.0000	2885.0	14.42%	3413.0	17.13%
At5g58900(MYBrelated)/colamp-At5g58900-DAP-Seq(GSE60143)/Homer	WWWTYTTATCTWWWW	1e0	-0.000e+00	1.0000	2331.0	11.65%	2777.0	13.94%
At3g11280(MYBrelated)/col-At3g11280-DAP-Seq(GSE60143)/Homer	GATAAGRT	1e0	-0.000e+00	1.0000	1641.0	8.21%	2124.3	10.66%
Unknown5/Drosophila-Promoters/Homer	GCTGATAASV	1e0	-0.000e+00	1.0000	839.0	4.20%	1135.2	5.70%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-0.000e+00	1.0000	2374.0	11.87%	2820.1	14.16%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-0.000e+00	1.0000	2925.0	14.62%	3625.4	18.20%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-0.000e+00	1.0000	1396.0	6.98%	1960.3	9.84%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-0.000e+00	1.0000	592.0	2.96%	924.1	4.64%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e0	-0.000e+00	1.0000	1987.0	9.93%	2649.8	13.30%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-0.000e+00	1.0000	246.0	1.23%	734.8	3.69%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	-0.000e+00	1.0000	1141.0	5.71%	1549.6	7.78%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e0	-0.000e+00	1.0000	1000.0	5.00%	1374.0	6.90%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-0.000e+00	1.0000	610.0	3.05%	980.5	4.92%
 Ik-1	NHTTGGGAATRCC	1e0	0.000e+00	1.0000	20000.0	100.00%	19921.6	100.00%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	0.000e+00	1.0000	0.0	0.00%	3.3	0.02%