python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== Input_rep1-GSM2787575.2x36mers.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes Input_rep1-GSM2787575.2x36mers.unique.wig -notitle -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== Input_rep2-GSM2787576.2x36mers.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes Input_rep2-GSM2787576.2x36mers.unique.wig -notitle -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== Input_rep3-GSM2787577.2x36mers.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes Input_rep3-GSM2787577.2x36mers.unique.wig -notitle -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== Input_rep4-GSM2787578.2x36mers.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes Input_rep4-GSM2787578.2x36mers.unique.wig -notitle -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== Input_rep5-GSM2787579.2x36mers.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes Input_rep5-GSM2787579.2x36mers.unique.wig -notitle -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== STARR_rep1-GSM2787580.2x36mers.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes STARR_rep1-GSM2787580.2x36mers.unique.wig -notitle -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== STARR_rep2-GSM2787581.2x36mers.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes STARR_rep2-GSM2787581.2x36mers.unique.wig -notitle -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== STARR_rep3-GSM2787582.2x36mers.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes STARR_rep3-GSM2787582.2x36mers.unique.wig -notitle -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== STARR_rep4-GSM2787583.2x36mers.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes STARR_rep4-GSM2787583.2x36mers.unique.wig -notitle -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== STARR_rep5-GSM2787584.2x36mers.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes STARR_rep5-GSM2787584.2x36mers.unique.wig -notitle -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== Input_rep1-GSM2787575.2x36mers.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes Input_rep1-GSM2787575.2x36mers.unique.plus.wig -stranded + -fragments first-read-strand -notitle -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== Input_rep2-GSM2787576.2x36mers.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes Input_rep2-GSM2787576.2x36mers.unique.plus.wig -stranded + -fragments first-read-strand -notitle -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== Input_rep3-GSM2787577.2x36mers.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes Input_rep3-GSM2787577.2x36mers.unique.plus.wig -stranded + -fragments first-read-strand -notitle -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== Input_rep4-GSM2787578.2x36mers.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes Input_rep4-GSM2787578.2x36mers.unique.plus.wig -stranded + -fragments first-read-strand -notitle -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== Input_rep5-GSM2787579.2x36mers.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes Input_rep5-GSM2787579.2x36mers.unique.plus.wig -stranded + -fragments first-read-strand -notitle -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== STARR_rep1-GSM2787580.2x36mers.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes STARR_rep1-GSM2787580.2x36mers.unique.plus.wig -stranded + -fragments first-read-strand -notitle -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== STARR_rep2-GSM2787581.2x36mers.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes STARR_rep2-GSM2787581.2x36mers.unique.plus.wig -stranded + -fragments first-read-strand -notitle -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== STARR_rep3-GSM2787582.2x36mers.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes STARR_rep3-GSM2787582.2x36mers.unique.plus.wig -stranded + -fragments first-read-strand -notitle -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== STARR_rep4-GSM2787583.2x36mers.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes STARR_rep4-GSM2787583.2x36mers.unique.plus.wig -stranded + -fragments first-read-strand -notitle -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== STARR_rep5-GSM2787584.2x36mers.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes STARR_rep5-GSM2787584.2x36mers.unique.plus.wig -stranded + -fragments first-read-strand -notitle -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== Input_rep1-GSM2787575.2x36mers.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes Input_rep1-GSM2787575.2x36mers.unique.minus.wig -stranded - -fragments first-read-strand -notitle -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== Input_rep2-GSM2787576.2x36mers.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes Input_rep2-GSM2787576.2x36mers.unique.minus.wig -stranded - -fragments first-read-strand -notitle -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== Input_rep3-GSM2787577.2x36mers.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes Input_rep3-GSM2787577.2x36mers.unique.minus.wig -stranded - -fragments first-read-strand -notitle -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== Input_rep4-GSM2787578.2x36mers.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes Input_rep4-GSM2787578.2x36mers.unique.minus.wig -stranded - -fragments first-read-strand -notitle -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== Input_rep5-GSM2787579.2x36mers.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes Input_rep5-GSM2787579.2x36mers.unique.minus.wig -stranded - -fragments first-read-strand -notitle -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== STARR_rep1-GSM2787580.2x36mers.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes STARR_rep1-GSM2787580.2x36mers.unique.minus.wig -stranded - -fragments first-read-strand -notitle -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== STARR_rep2-GSM2787581.2x36mers.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes STARR_rep2-GSM2787581.2x36mers.unique.minus.wig -stranded - -fragments first-read-strand -notitle -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== STARR_rep3-GSM2787582.2x36mers.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes STARR_rep3-GSM2787582.2x36mers.unique.minus.wig -stranded - -fragments first-read-strand -notitle -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== STARR_rep4-GSM2787583.2x36mers.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes STARR_rep4-GSM2787583.2x36mers.unique.minus.wig -stranded - -fragments first-read-strand -notitle -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== STARR_rep5-GSM2787584.2x36mers.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes STARR_rep5-GSM2787584.2x36mers.unique.minus.wig -stranded - -fragments first-read-strand -notitle -uniqueBAM