python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Input_rep1-GSM2787575.2x36mers.unique.bam SAMstats-Input_rep1-GSM2787575 -paired -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /woldlab/castor/proj/programs/samtools-0.1.8/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Input_rep2-GSM2787576.2x36mers.unique.bam SAMstats-Input_rep2-GSM2787576 -paired -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /woldlab/castor/proj/programs/samtools-0.1.8/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Input_rep3-GSM2787577.2x36mers.unique.bam SAMstats-Input_rep3-GSM2787577 -paired -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /woldlab/castor/proj/programs/samtools-0.1.8/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Input_rep4-GSM2787578.2x36mers.unique.bam SAMstats-Input_rep4-GSM2787578 -paired -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /woldlab/castor/proj/programs/samtools-0.1.8/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py Input_rep5-GSM2787579.2x36mers.unique.bam SAMstats-Input_rep5-GSM2787579 -paired -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /woldlab/castor/proj/programs/samtools-0.1.8/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py STARR_rep1-GSM2787580.2x36mers.unique.bam SAMstats-STARR_rep1-GSM2787580 -paired -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /woldlab/castor/proj/programs/samtools-0.1.8/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py STARR_rep2-GSM2787581.2x36mers.unique.bam SAMstats-STARR_rep2-GSM2787581 -paired -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /woldlab/castor/proj/programs/samtools-0.1.8/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py STARR_rep3-GSM2787582.2x36mers.unique.bam SAMstats-STARR_rep3-GSM2787582 -paired -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /woldlab/castor/proj/programs/samtools-0.1.8/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py STARR_rep4-GSM2787583.2x36mers.unique.bam SAMstats-STARR_rep4-GSM2787583 -paired -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /woldlab/castor/proj/programs/samtools-0.1.8/samtools
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py STARR_rep5-GSM2787584.2x36mers.unique.bam SAMstats-STARR_rep5-GSM2787584 -paired -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /woldlab/castor/proj/programs/samtools-0.1.8/samtools