## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[cf.Adult6.spleen.FF.2x36mers.canFam3.unique.bam] OUTPUT=cf.Adult6.spleen.FF.2x36mers.canFam3.unique.dedup.bam METRICS_FILE=cf.Adult6.spleen.FF.2x36mers.canFam3.unique.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Wed Oct 23 09:20:56 PDT 2024

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	42383024	0	0	2068322	0	0.048801	420000233

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1
2.0	1.904013
3.0	2.721252
4.0	3.460046
5.0	4.127925
6.0	4.731697
7.0	5.277514
8.0	5.770939
9.0	6.217002
10.0	6.620249
11.0	6.984789
12.0	7.314338
13.0	7.612254
14.0	7.881574
15.0	8.125043
16.0	8.345141
17.0	8.544114
18.0	8.723987
19.0	8.886595
20.0	9.033594
21.0	9.166484
22.0	9.286617
23.0	9.39522
24.0	9.493398
25.0	9.582152
26.0	9.662386
27.0	9.73492
28.0	9.800491
29.0	9.859768
30.0	9.913355
31.0	9.961799
32.0	10.005592
33.0	10.045182
34.0	10.080972
35.0	10.113326
36.0	10.142575
37.0	10.169016
38.0	10.192919
39.0	10.214528
40.0	10.234063
41.0	10.251723
42.0	10.267687
43.0	10.282119
44.0	10.295166
45.0	10.30696
46.0	10.317623
47.0	10.327262
48.0	10.335975
49.0	10.343853
50.0	10.350974
51.0	10.357412
52.0	10.363231
53.0	10.368492
54.0	10.373248
55.0	10.377548
56.0	10.381435
57.0	10.384949
58.0	10.388125
59.0	10.390997
60.0	10.393593
61.0	10.395939
62.0	10.398061
63.0	10.399979
64.0	10.401713
65.0	10.40328
66.0	10.404697
67.0	10.405978
68.0	10.407136
69.0	10.408182
70.0	10.409129
71.0	10.409984
72.0	10.410758
73.0	10.411457
74.0	10.412089
75.0	10.41266
76.0	10.413177
77.0	10.413644
78.0	10.414066
79.0	10.414447
80.0	10.414792
81.0	10.415104
82.0	10.415386
83.0	10.415641
84.0	10.415871
85.0	10.41608
86.0	10.416268
87.0	10.416438
88.0	10.416592
89.0	10.416731
90.0	10.416857
91.0	10.416971
92.0	10.417073
93.0	10.417166
94.0	10.41725
95.0	10.417326
96.0	10.417395
97.0	10.417457
98.0	10.417513
99.0	10.417564
100.0	10.41761