## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[cf.Adult6.pituitary.FF.2x36mers.canFam3.unique.bam] OUTPUT=cf.Adult6.pituitary.FF.2x36mers.canFam3.unique.dedup.bam METRICS_FILE=cf.Adult6.pituitary.FF.2x36mers.canFam3.unique.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Wed Oct 23 09:20:06 PDT 2024

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	32017528	0	0	1759850	0	0.054965	280479437

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1
2.0	1.892122
3.0	2.688002
4.0	3.398025
5.0	4.031451
6.0	4.596545
7.0	5.100677
8.0	5.550424
9.0	5.951653
10.0	6.309598
11.0	6.628929
12.0	6.91381
13.0	7.167959
14.0	7.394691
15.0	7.596964
16.0	7.777415
17.0	7.9384
18.0	8.082018
19.0	8.210143
20.0	8.324445
21.0	8.426417
22.0	8.517389
23.0	8.598546
24.0	8.670949
25.0	8.735541
26.0	8.793164
27.0	8.844572
28.0	8.890433
29.0	8.931347
30.0	8.967848
31.0	9.000411
32.0	9.02946
33.0	9.055377
34.0	9.078497
35.0	9.099123
36.0	9.117524
37.0	9.13394
38.0	9.148585
39.0	9.16165
40.0	9.173306
41.0	9.183704
42.0	9.192981
43.0	9.201256
44.0	9.208639
45.0	9.215226
46.0	9.221102
47.0	9.226344
48.0	9.231021
49.0	9.235193
50.0	9.238915
51.0	9.242235
52.0	9.245198
53.0	9.24784
54.0	9.250198
55.0	9.252301
56.0	9.254178
57.0	9.255852
58.0	9.257345
59.0	9.258677
60.0	9.259866
61.0	9.260926
62.0	9.261872
63.0	9.262716
64.0	9.263469
65.0	9.26414
66.0	9.26474
67.0	9.265274
68.0	9.265751
69.0	9.266176
70.0	9.266556
71.0	9.266895
72.0	9.267197
73.0	9.267466
74.0	9.267707
75.0	9.267921
76.0	9.268112
77.0	9.268283
78.0	9.268435
79.0	9.268571
80.0	9.268692
81.0	9.268801
82.0	9.268897
83.0	9.268983
84.0	9.26906
85.0	9.269128
86.0	9.269189
87.0	9.269244
88.0	9.269293
89.0	9.269336
90.0	9.269375
91.0	9.269409
92.0	9.26944
93.0	9.269467
94.0	9.269492
95.0	9.269514
96.0	9.269533
97.0	9.269551
98.0	9.269566
99.0	9.26958
100.0	9.269592