## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[cf.Adult6.lymph_node.FF.2x36mers.canFam3.unique.bam] OUTPUT=cf.Adult6.lymph_node.FF.2x36mers.canFam3.unique.dedup.bam METRICS_FILE=cf.Adult6.lymph_node.FF.2x36mers.canFam3.unique.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Wed Oct 23 09:20:55 PDT 2024

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	32550662	0	0	2014817	0	0.061898	251972409

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1
2.0	1.878813
3.0	2.651125
4.0	3.329842
5.0	3.926308
6.0	4.450489
7.0	4.911147
8.0	5.315978
9.0	5.671749
10.0	5.984406
11.0	6.259172
12.0	6.50064
13.0	6.712845
14.0	6.899334
15.0	7.063223
16.0	7.20725
17.0	7.333823
18.0	7.445057
19.0	7.542811
20.0	7.628719
21.0	7.704215
22.0	7.770562
23.0	7.828869
24.0	7.88011
25.0	7.925141
26.0	7.964715
27.0	7.999493
28.0	8.030056
29.0	8.056916
30.0	8.08052
31.0	8.101264
32.0	8.119494
33.0	8.135515
34.0	8.149594
35.0	8.161967
36.0	8.172841
37.0	8.182397
38.0	8.190795
39.0	8.198175
40.0	8.20466
41.0	8.21036
42.0	8.215369
43.0	8.219771
44.0	8.22364
45.0	8.227039
46.0	8.230027
47.0	8.232652
48.0	8.23496
49.0	8.236988
50.0	8.23877
51.0	8.240336
52.0	8.241712
53.0	8.242922
54.0	8.243985
55.0	8.244919
56.0	8.24574
57.0	8.246461
58.0	8.247095
59.0	8.247652
60.0	8.248142
61.0	8.248572
62.0	8.24895
63.0	8.249283
64.0	8.249575
65.0	8.249831
66.0	8.250057
67.0	8.250255
68.0	8.250429
69.0	8.250583
70.0	8.250717
71.0	8.250835
72.0	8.250939
73.0	8.251031
74.0	8.251111
75.0	8.251181
76.0	8.251243
77.0	8.251298
78.0	8.251346
79.0	8.251388
80.0	8.251425
81.0	8.251457
82.0	8.251486
83.0	8.251511
84.0	8.251533
85.0	8.251552
86.0	8.251569
87.0	8.251584
88.0	8.251597
89.0	8.251609
90.0	8.251619
91.0	8.251628
92.0	8.251636
93.0	8.251643
94.0	8.251649
95.0	8.251654
96.0	8.251659
97.0	8.251663
98.0	8.251666
99.0	8.25167
100.0	8.251672