## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[cf.Adult6.liver.FF.2x36mers.canFam3.unique.bam] OUTPUT=cf.Adult6.liver.FF.2x36mers.canFam3.unique.dedup.bam METRICS_FILE=cf.Adult6.liver.FF.2x36mers.canFam3.unique.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Wed Oct 23 09:20:55 PDT 2024

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	23127004	0	0	1052886	0	0.045526	246227348

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1
2.0	1.910351
3.0	2.739089
4.0	3.493531
5.0	4.180339
6.0	4.805574
7.0	5.374758
8.0	5.892914
9.0	6.364618
10.0	6.794035
11.0	7.184954
12.0	7.540828
13.0	7.864797
14.0	8.159723
15.0	8.42821
16.0	8.672626
17.0	8.895131
18.0	9.097689
19.0	9.282087
20.0	9.449954
21.0	9.602772
22.0	9.74189
23.0	9.868536
24.0	9.983828
25.0	10.088785
26.0	10.184332
27.0	10.271313
28.0	10.350497
29.0	10.422582
30.0	10.488204
31.0	10.547944
32.0	10.602327
33.0	10.651836
34.0	10.696906
35.0	10.737935
36.0	10.775287
37.0	10.809289
38.0	10.840244
39.0	10.868423
40.0	10.894076
41.0	10.917429
42.0	10.938689
43.0	10.958043
44.0	10.975662
45.0	10.991701
46.0	11.006302
47.0	11.019595
48.0	11.031695
49.0	11.042711
50.0	11.052739
51.0	11.061869
52.0	11.07018
53.0	11.077745
54.0	11.084633
55.0	11.090903
56.0	11.096611
57.0	11.101807
58.0	11.106537
59.0	11.110844
60.0	11.114764
61.0	11.118333
62.0	11.121582
63.0	11.124539
64.0	11.127232
65.0	11.129683
66.0	11.131914
67.0	11.133945
68.0	11.135795
69.0	11.137478
70.0	11.139011
71.0	11.140406
72.0	11.141676
73.0	11.142832
74.0	11.143884
75.0	11.144843
76.0	11.145715
77.0	11.146509
78.0	11.147232
79.0	11.14789
80.0	11.148489
81.0	11.149034
82.0	11.149531
83.0	11.149983
84.0	11.150394
85.0	11.150769
86.0	11.15111
87.0	11.15142
88.0	11.151703
89.0	11.15196
90.0	11.152194
91.0	11.152407
92.0	11.152602
93.0	11.152778
94.0	11.152939
95.0	11.153086
96.0	11.153219
97.0	11.15334
98.0	11.153451
99.0	11.153551
100.0	11.153643