## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[cf.Adult6.bone_marrow.FF.2x36mers.canFam3.unique.bam] OUTPUT=cf.Adult6.bone_marrow.FF.2x36mers.canFam3.unique.dedup.bam METRICS_FILE=cf.Adult6.bone_marrow.FF.2x36mers.canFam3.unique.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Wed Oct 23 09:20:56 PDT 2024

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	42788400	0	0	2381625	0	0.055661	369970130

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1
2.0	1.890784
3.0	2.684279
4.0	3.391112
5.0	4.020747
6.0	4.581616
7.0	5.081229
8.0	5.526276
9.0	5.922716
10.0	6.275859
11.0	6.590433
12.0	6.87065
13.0	7.120263
14.0	7.342614
15.0	7.540681
16.0	7.717115
17.0	7.87428
18.0	8.014281
19.0	8.13899
20.0	8.25008
21.0	8.349036
22.0	8.437185
23.0	8.515707
24.0	8.585653
25.0	8.64796
26.0	8.703461
27.0	8.752901
28.0	8.796942
29.0	8.836172
30.0	8.871118
31.0	8.902247
32.0	8.929976
33.0	8.954677
34.0	8.97668
35.0	8.99628
36.0	9.01374
37.0	9.029292
38.0	9.043146
39.0	9.055487
40.0	9.06648
41.0	9.076273
42.0	9.084996
43.0	9.092766
44.0	9.099687
45.0	9.105853
46.0	9.111345
47.0	9.116238
48.0	9.120596
49.0	9.124478
50.0	9.127936
51.0	9.131017
52.0	9.133761
53.0	9.136205
54.0	9.138382
55.0	9.140322
56.0	9.142049
57.0	9.143588
58.0	9.144959
59.0	9.146181
60.0	9.147268
61.0	9.148238
62.0	9.149101
63.0	9.14987
64.0	9.150555
65.0	9.151165
66.0	9.151708
67.0	9.152192
68.0	9.152624
69.0	9.153008
70.0	9.15335
71.0	9.153655
72.0	9.153926
73.0	9.154168
74.0	9.154384
75.0	9.154576
76.0	9.154747
77.0	9.154899
78.0	9.155035
79.0	9.155155
80.0	9.155263
81.0	9.155359
82.0	9.155444
83.0	9.15552
84.0	9.155588
85.0	9.155649
86.0	9.155702
87.0	9.15575
88.0	9.155793
89.0	9.155831
90.0	9.155865
91.0	9.155895
92.0	9.155922
93.0	9.155946
94.0	9.155967
95.0	9.155986
96.0	9.156003
97.0	9.156018
98.0	9.156032
99.0	9.156043
100.0	9.156054