## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[cf.Adult5.stomach.FF.2x36mers.canFam3.unique.bam] OUTPUT=cf.Adult5.stomach.FF.2x36mers.canFam3.unique.dedup.bam METRICS_FILE=cf.Adult5.stomach.FF.2x36mers.canFam3.unique.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Wed Oct 23 09:20:55 PDT 2024

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	19561879	0	0	447733	0	0.022888	420792705

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1
2.0	1.954576
3.0	2.865791
4.0	3.735615
5.0	4.565928
6.0	5.358524
7.0	6.115118
8.0	6.837344
9.0	7.526764
10.0	8.184867
11.0	8.813076
12.0	9.41275
13.0	9.985184
14.0	10.531616
15.0	11.053226
16.0	11.551143
17.0	12.026442
18.0	12.480151
19.0	12.913251
20.0	13.326678
21.0	13.721325
22.0	14.098046
23.0	14.457654
24.0	14.800928
25.0	15.128608
26.0	15.441404
27.0	15.739992
28.0	16.025016
29.0	16.297094
30.0	16.556812
31.0	16.804733
32.0	17.041393
33.0	17.267302
34.0	17.48295
35.0	17.688802
36.0	17.885303
37.0	18.072879
38.0	18.251934
39.0	18.422856
40.0	18.586013
41.0	18.74176
42.0	18.890431
43.0	19.03235
44.0	19.167822
45.0	19.29714
46.0	19.420584
47.0	19.538421
48.0	19.650905
49.0	19.758279
50.0	19.860776
51.0	19.958618
52.0	20.052015
53.0	20.141169
54.0	20.226274
55.0	20.307513
56.0	20.385062
57.0	20.459088
58.0	20.529751
59.0	20.597205
60.0	20.661595
61.0	20.72306
62.0	20.781733
63.0	20.83774
64.0	20.891204
65.0	20.942239
66.0	20.990956
67.0	21.03746
68.0	21.081851
69.0	21.124226
70.0	21.164677
71.0	21.203289
72.0	21.240148
73.0	21.275333
74.0	21.308919
75.0	21.34098
76.0	21.371584
77.0	21.400798
78.0	21.428686
79.0	21.455306
80.0	21.480717
81.0	21.504974
82.0	21.528129
83.0	21.550233
84.0	21.571332
85.0	21.591473
86.0	21.610699
87.0	21.629051
88.0	21.64657
89.0	21.663293
90.0	21.679257
91.0	21.694495
92.0	21.709042
93.0	21.722927
94.0	21.736182
95.0	21.748835
96.0	21.760913
97.0	21.772442
98.0	21.783447
99.0	21.793953
100.0	21.803982