## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[cf.Adult5.skeletal_muscle.FF.2x36mers.canFam3.unique.bam] OUTPUT=cf.Adult5.skeletal_muscle.FF.2x36mers.canFam3.unique.dedup.bam METRICS_FILE=cf.Adult5.skeletal_muscle.FF.2x36mers.canFam3.unique.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Wed Oct 23 09:20:55 PDT 2024

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	16364348	0	0	665543	0	0.04067	195690426

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1
2.0	1.919777
3.0	2.765768
4.0	3.54389
5.0	4.25959
6.0	4.917875
7.0	5.52335
8.0	6.080252
9.0	6.592478
10.0	7.063612
11.0	7.49695
12.0	7.895525
13.0	8.262125
14.0	8.599315
15.0	8.909456
16.0	9.194715
17.0	9.457091
18.0	9.698418
19.0	9.920385
20.0	10.124546
21.0	10.312328
22.0	10.485045
23.0	10.643907
24.0	10.790025
25.0	10.92442
26.0	11.048034
27.0	11.161732
28.0	11.266308
29.0	11.362495
30.0	11.450965
31.0	11.532339
32.0	11.607184
33.0	11.676025
34.0	11.739343
35.0	11.797582
36.0	11.851149
37.0	11.900418
38.0	11.945735
39.0	11.987416
40.0	12.025754
41.0	12.061016
42.0	12.093449
43.0	12.123281
44.0	12.150719
45.0	12.175956
46.0	12.199169
47.0	12.220519
48.0	12.240157
49.0	12.258219
50.0	12.274832
51.0	12.290112
52.0	12.304167
53.0	12.317094
54.0	12.328984
55.0	12.33992
56.0	12.349979
57.0	12.359231
58.0	12.367741
59.0	12.375568
60.0	12.382767
61.0	12.389389
62.0	12.395479
63.0	12.401081
64.0	12.406233
65.0	12.410972
66.0	12.415331
67.0	12.41934
68.0	12.423028
69.0	12.42642
70.0	12.429539
71.0	12.432409
72.0	12.435048
73.0	12.437475
74.0	12.439708
75.0	12.441762
76.0	12.443651
77.0	12.445388
78.0	12.446986
79.0	12.448456
80.0	12.449808
81.0	12.451051
82.0	12.452195
83.0	12.453247
84.0	12.454214
85.0	12.455104
86.0	12.455923
87.0	12.456675
88.0	12.457368
89.0	12.458005
90.0	12.458591
91.0	12.459129
92.0	12.459625
93.0	12.460081
94.0	12.4605
95.0	12.460886
96.0	12.46124
97.0	12.461567
98.0	12.461867
99.0	12.462143
100.0	12.462397