## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[cf.Adult5.salivary.FF.2x36mers.canFam3.unique.bam] OUTPUT=cf.Adult5.salivary.FF.2x36mers.canFam3.unique.dedup.bam METRICS_FILE=cf.Adult5.salivary.FF.2x36mers.canFam3.unique.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Wed Oct 23 09:20:56 PDT 2024

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	45101055	0	0	1716244	0	0.038053	577472703

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1
2.0	1.924871
3.0	2.780258
4.0	3.571381
5.0	4.303067
6.0	4.979783
7.0	5.605658
8.0	6.184512
9.0	6.719877
10.0	7.215021
11.0	7.672966
12.0	8.096505
13.0	8.488225
14.0	8.850515
15.0	9.185587
16.0	9.495485
17.0	9.782101
18.0	10.047184
19.0	10.292351
20.0	10.519099
21.0	10.728813
22.0	10.92277
23.0	11.102156
24.0	11.268065
25.0	11.421509
26.0	11.563425
27.0	11.694679
28.0	11.816072
29.0	11.928345
30.0	12.032184
31.0	12.12822
32.0	12.217042
33.0	12.299191
34.0	12.375168
35.0	12.445437
36.0	12.510427
37.0	12.570534
38.0	12.626125
39.0	12.67754
40.0	12.725092
41.0	12.769071
42.0	12.809747
43.0	12.847366
44.0	12.88216
45.0	12.914339
46.0	12.944101
47.0	12.971626
48.0	12.997084
49.0	13.020629
50.0	13.042405
51.0	13.062546
52.0	13.081173
53.0	13.0984
54.0	13.114334
55.0	13.12907
56.0	13.142699
57.0	13.155304
58.0	13.166963
59.0	13.177745
60.0	13.187717
61.0	13.19694
62.0	13.205471
63.0	13.21336
64.0	13.220656
65.0	13.227405
66.0	13.233646
67.0	13.239419
68.0	13.244758
69.0	13.249695
70.0	13.254262
71.0	13.258486
72.0	13.262392
73.0	13.266005
74.0	13.269346
75.0	13.272437
76.0	13.275295
77.0	13.277938
78.0	13.280383
79.0	13.282645
80.0	13.284736
81.0	13.28667
82.0	13.288459
83.0	13.290113
84.0	13.291644
85.0	13.293059
86.0	13.294368
87.0	13.295578
88.0	13.296698
89.0	13.297733
90.0	13.298691
91.0	13.299577
92.0	13.300396
93.0	13.301154
94.0	13.301855
95.0	13.302503
96.0	13.303102
97.0	13.303656
98.0	13.304169
99.0	13.304643
100.0	13.305082