## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[cf.Adult5.pituitary.FF.2x36mers.canFam3.unique.bam] OUTPUT=cf.Adult5.pituitary.FF.2x36mers.canFam3.unique.dedup.bam METRICS_FILE=cf.Adult5.pituitary.FF.2x36mers.canFam3.unique.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Wed Oct 23 09:20:55 PDT 2024

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	38991394	0	0	2248351	0	0.057663	324972599

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1
2.0	1.886935
3.0	2.673589
4.0	3.371299
5.0	3.990123
6.0	4.53898
7.0	5.02578
8.0	5.45754
9.0	5.840483
10.0	6.180128
11.0	6.481372
12.0	6.748555
13.0	6.985529
14.0	7.19571
15.0	7.382127
16.0	7.547466
17.0	7.694112
18.0	7.824177
19.0	7.939536
20.0	8.041852
21.0	8.132599
22.0	8.213087
23.0	8.284473
24.0	8.347789
25.0	8.403946
26.0	8.453753
27.0	8.497929
28.0	8.537111
29.0	8.571862
30.0	8.602684
31.0	8.630021
32.0	8.654267
33.0	8.675772
34.0	8.694845
35.0	8.711762
36.0	8.726766
37.0	8.740074
38.0	8.751877
39.0	8.762346
40.0	8.771631
41.0	8.779866
42.0	8.78717
43.0	8.793648
44.0	8.799394
45.0	8.80449
46.0	8.80901
47.0	8.813019
48.0	8.816574
49.0	8.819728
50.0	8.822525
51.0	8.825006
52.0	8.827206
53.0	8.829158
54.0	8.830888
55.0	8.832424
56.0	8.833785
57.0	8.834993
58.0	8.836064
59.0	8.837014
60.0	8.837856
61.0	8.838604
62.0	8.839267
63.0	8.839855
64.0	8.840376
65.0	8.840838
66.0	8.841249
67.0	8.841612
68.0	8.841935
69.0	8.842221
70.0	8.842475
71.0	8.8427
72.0	8.8429
73.0	8.843077
74.0	8.843234
75.0	8.843373
76.0	8.843497
77.0	8.843606
78.0	8.843704
79.0	8.84379
80.0	8.843866
81.0	8.843934
82.0	8.843994
83.0	8.844048
84.0	8.844095
85.0	8.844137
86.0	8.844174
87.0	8.844207
88.0	8.844236
89.0	8.844262
90.0	8.844285
91.0	8.844306
92.0	8.844324
93.0	8.84434
94.0	8.844354
95.0	8.844367
96.0	8.844378
97.0	8.844388
98.0	8.844397
99.0	8.844405
100.0	8.844412