## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[cf.Adult5.pancreas.FF.2x36mers.canFam3.unique.bam] OUTPUT=cf.Adult5.pancreas.FF.2x36mers.canFam3.unique.dedup.bam METRICS_FILE=cf.Adult5.pancreas.FF.2x36mers.canFam3.unique.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Wed Oct 23 09:20:56 PDT 2024

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	1056060	0	0	140594	0	0.133131	3605812

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1
2.0	1.746114
3.0	2.302799
4.0	2.71815
5.0	3.028049
6.0	3.259269
7.0	3.431786
8.0	3.560503
9.0	3.65654
10.0	3.728195
11.0	3.781658
12.0	3.821547
13.0	3.851309
14.0	3.873514
15.0	3.890082
16.0	3.902444
17.0	3.911667
18.0	3.918549
19.0	3.923683
20.0	3.927514
21.0	3.930372
22.0	3.932505
23.0	3.934096
24.0	3.935283
25.0	3.936169
26.0	3.93683
27.0	3.937323
28.0	3.937691
29.0	3.937965
30.0	3.93817
31.0	3.938323
32.0	3.938437
33.0	3.938522
34.0	3.938586
35.0	3.938633
36.0	3.938668
37.0	3.938695
38.0	3.938714
39.0	3.938729
40.0	3.93874
41.0	3.938748
42.0	3.938754
43.0	3.938759
44.0	3.938762
45.0	3.938765
46.0	3.938767
47.0	3.938768
48.0	3.938769
49.0	3.93877
50.0	3.93877
51.0	3.938771
52.0	3.938771
53.0	3.938771
54.0	3.938772
55.0	3.938772
56.0	3.938772
57.0	3.938772
58.0	3.938772
59.0	3.938772
60.0	3.938772
61.0	3.938772
62.0	3.938772
63.0	3.938772
64.0	3.938772
65.0	3.938772
66.0	3.938772
67.0	3.938772
68.0	3.938772
69.0	3.938772
70.0	3.938772
71.0	3.938772
72.0	3.938772
73.0	3.938772
74.0	3.938772
75.0	3.938772
76.0	3.938772
77.0	3.938772
78.0	3.938772
79.0	3.938772
80.0	3.938772
81.0	3.938772
82.0	3.938772
83.0	3.938772
84.0	3.938772
85.0	3.938772
86.0	3.938772
87.0	3.938772
88.0	3.938772
89.0	3.938772
90.0	3.938772
91.0	3.938772
92.0	3.938772
93.0	3.938772
94.0	3.938772
95.0	3.938772
96.0	3.938772
97.0	3.938772
98.0	3.938772
99.0	3.938772
100.0	3.938772