## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[cf.Adult5.left_atrium.FF.2x36mers.canFam3.unique.bam] OUTPUT=cf.Adult5.left_atrium.FF.2x36mers.canFam3.unique.dedup.bam METRICS_FILE=cf.Adult5.left_atrium.FF.2x36mers.canFam3.unique.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Wed Oct 23 09:20:55 PDT 2024

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	14791760	0	0	511000	0	0.034546	209126755

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1
2.0	1.931712
3.0	2.7998
4.0	3.608609
5.0	4.362186
6.0	5.064303
7.0	5.718474
8.0	6.327973
9.0	6.895851
10.0	7.42495
11.0	7.917918
12.0	8.377223
13.0	8.805162
14.0	9.203879
15.0	9.575369
16.0	9.92149
17.0	10.243975
18.0	10.544439
19.0	10.824385
20.0	11.085214
21.0	11.328231
22.0	11.554654
23.0	11.765614
24.0	11.962169
25.0	12.145302
26.0	12.315928
27.0	12.474903
28.0	12.623022
29.0	12.761027
30.0	12.889607
31.0	13.009407
32.0	13.121026
33.0	13.225023
34.0	13.321918
35.0	13.412197
36.0	13.49631
37.0	13.57468
38.0	13.647698
39.0	13.71573
40.0	13.779116
41.0	13.838173
42.0	13.893198
43.0	13.944465
44.0	13.992231
45.0	14.036736
46.0	14.078201
47.0	14.116835
48.0	14.15283
49.0	14.186368
50.0	14.217615
51.0	14.246728
52.0	14.273854
53.0	14.299127
54.0	14.322674
55.0	14.344613
56.0	14.365054
57.0	14.3841
58.0	14.401844
59.0	14.418377
60.0	14.433781
61.0	14.448133
62.0	14.461505
63.0	14.473964
64.0	14.485572
65.0	14.496387
66.0	14.506464
67.0	14.515853
68.0	14.5246
69.0	14.53275
70.0	14.540344
71.0	14.547419
72.0	14.554011
73.0	14.560153
74.0	14.565875
75.0	14.571207
76.0	14.576174
77.0	14.580803
78.0	14.585115
79.0	14.589133
80.0	14.592876
81.0	14.596364
82.0	14.599614
83.0	14.602641
84.0	14.605462
85.0	14.608091
86.0	14.61054
87.0	14.612821
88.0	14.614947
89.0	14.616928
90.0	14.618773
91.0	14.620492
92.0	14.622094
93.0	14.623587
94.0	14.624978
95.0	14.626273
96.0	14.62748
97.0	14.628605
98.0	14.629653
99.0	14.63063
100.0	14.631539