## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[cf.Adult4.thyroid.FF.2x36mers.canFam3.unique.bam] OUTPUT=cf.Adult4.thyroid.FF.2x36mers.canFam3.unique.dedup.bam METRICS_FILE=cf.Adult4.thyroid.FF.2x36mers.canFam3.unique.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Wed Oct 23 09:20:55 PDT 2024

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	42040610	0	0	1134793	0	0.026993	764660506

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1
2.0	1.946505
3.0	2.842376
4.0	3.690322
5.0	4.492906
6.0	5.252557
7.0	5.971569
8.0	6.652117
9.0	7.29626
10.0	7.905944
11.0	8.483012
12.0	9.02921
13.0	9.546189
14.0	10.035512
15.0	10.498658
16.0	10.937028
17.0	11.351947
18.0	11.74467
19.0	12.116385
20.0	12.468214
21.0	12.801222
22.0	13.116415
23.0	13.414748
24.0	13.69712
25.0	13.964387
26.0	14.217357
27.0	14.456794
28.0	14.683422
29.0	14.897926
30.0	15.100956
31.0	15.293124
32.0	15.475013
33.0	15.647171
34.0	15.810119
35.0	15.96435
36.0	16.110331
37.0	16.248503
38.0	16.379283
39.0	16.503066
40.0	16.620228
41.0	16.731123
42.0	16.836085
43.0	16.935431
44.0	17.029464
45.0	17.118466
46.0	17.202707
47.0	17.282441
48.0	17.35791
49.0	17.429342
50.0	17.496952
51.0	17.560946
52.0	17.621516
53.0	17.678846
54.0	17.733109
55.0	17.78447
56.0	17.833082
57.0	17.879094
58.0	17.922645
59.0	17.963866
60.0	18.002882
61.0	18.039811
62.0	18.074764
63.0	18.107847
64.0	18.139161
65.0	18.168799
66.0	18.196852
67.0	18.223404
68.0	18.248536
69.0	18.272323
70.0	18.294838
71.0	18.316149
72.0	18.336319
73.0	18.35541
74.0	18.37348
75.0	18.390584
76.0	18.406772
77.0	18.422095
78.0	18.436597
79.0	18.450324
80.0	18.463317
81.0	18.475614
82.0	18.487254
83.0	18.498271
84.0	18.508699
85.0	18.518569
86.0	18.52791
87.0	18.536752
88.0	18.545122
89.0	18.553043
90.0	18.560541
91.0	18.567637
92.0	18.574354
93.0	18.580711
94.0	18.586729
95.0	18.592425
96.0	18.597815
97.0	18.602918
98.0	18.607747
99.0	18.612319
100.0	18.616645