## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[cf.Adult4.stomach.FF.2x36mers.canFam3.unique.bam] OUTPUT=cf.Adult4.stomach.FF.2x36mers.canFam3.unique.dedup.bam METRICS_FILE=cf.Adult4.stomach.FF.2x36mers.canFam3.unique.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Wed Oct 23 09:20:55 PDT 2024

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	42036628	0	0	1490469	0	0.035456	578696018

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1
2.0	1.929935
3.0	2.794715
4.0	3.598904
5.0	4.346748
6.0	5.042194
7.0	5.688915
8.0	6.290323
9.0	6.849593
10.0	7.369678
11.0	7.853324
12.0	8.303083
13.0	8.72133
14.0	9.110273
15.0	9.471965
16.0	9.808314
17.0	10.121098
18.0	10.411966
19.0	10.682455
20.0	10.933992
21.0	11.167905
22.0	11.385429
23.0	11.587713
24.0	11.775823
25.0	11.950754
26.0	12.113428
27.0	12.264704
28.0	12.405382
29.0	12.536202
30.0	12.657857
31.0	12.770988
32.0	12.876193
33.0	12.974026
34.0	13.065005
35.0	13.14961
36.0	13.228286
37.0	13.30145
38.0	13.369488
39.0	13.432759
40.0	13.491597
41.0	13.546312
42.0	13.597194
43.0	13.644511
44.0	13.688513
45.0	13.729431
46.0	13.767483
47.0	13.802868
48.0	13.835775
49.0	13.866375
50.0	13.894832
51.0	13.921295
52.0	13.945904
53.0	13.968788
54.0	13.990069
55.0	14.009859
56.0	14.028263
57.0	14.045377
58.0	14.061292
59.0	14.076092
60.0	14.089855
61.0	14.102653
62.0	14.114555
63.0	14.125623
64.0	14.135916
65.0	14.145487
66.0	14.154388
67.0	14.162665
68.0	14.170362
69.0	14.17752
70.0	14.184177
71.0	14.190367
72.0	14.196123
73.0	14.201476
74.0	14.206454
75.0	14.211083
76.0	14.215388
77.0	14.219391
78.0	14.223114
79.0	14.226576
80.0	14.229795
81.0	14.232789
82.0	14.235573
83.0	14.238162
84.0	14.240569
85.0	14.242808
86.0	14.24489
87.0	14.246826
88.0	14.248627
89.0	14.250301
90.0	14.251858
91.0	14.253306
92.0	14.254653
93.0	14.255905
94.0	14.257069
95.0	14.258152
96.0	14.259159
97.0	14.260095
98.0	14.260966
99.0	14.261776
100.0	14.262529