## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[cf.Adult4.spleen.FF.2x36mers.canFam3.unique.bam] OUTPUT=cf.Adult4.spleen.FF.2x36mers.canFam3.unique.dedup.bam METRICS_FILE=cf.Adult4.spleen.FF.2x36mers.canFam3.unique.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Wed Oct 23 09:20:56 PDT 2024

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	30454270	0	0	1260186	0	0.04138	357763354

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1
2.0	1.918398
3.0	2.761854
4.0	3.536482
5.0	4.247899
6.0	4.901264
7.0	5.501312
8.0	6.052396
9.0	6.558511
10.0	7.023325
11.0	7.45021
12.0	7.842261
13.0	8.202319
14.0	8.532996
15.0	8.83669
16.0	9.115601
17.0	9.371753
18.0	9.607002
19.0	9.823055
20.0	10.021477
21.0	10.203708
22.0	10.371069
23.0	10.524772
24.0	10.665933
25.0	10.795575
26.0	10.914639
27.0	11.023986
28.0	11.12441
29.0	11.21664
30.0	11.301344
31.0	11.379135
32.0	11.450579
33.0	11.516193
34.0	11.576452
35.0	11.631794
36.0	11.682621
37.0	11.729299
38.0	11.772169
39.0	11.811541
40.0	11.847699
41.0	11.880907
42.0	11.911405
43.0	11.939415
44.0	11.965139
45.0	11.988764
46.0	12.010461
47.0	12.030387
48.0	12.048688
49.0	12.065495
50.0	12.08093
51.0	12.095106
52.0	12.108125
53.0	12.120082
54.0	12.131063
55.0	12.141149
56.0	12.150411
57.0	12.158917
58.0	12.166729
59.0	12.173904
60.0	12.180493
61.0	12.186545
62.0	12.192102
63.0	12.197207
64.0	12.201894
65.0	12.206199
66.0	12.210153
67.0	12.213784
68.0	12.217119
69.0	12.220182
70.0	12.222995
71.0	12.225578
72.0	12.227951
73.0	12.23013
74.0	12.232131
75.0	12.233969
76.0	12.235656
77.0	12.237207
78.0	12.23863
79.0	12.239938
80.0	12.241138
81.0	12.242241
82.0	12.243254
83.0	12.244184
84.0	12.245038
85.0	12.245823
86.0	12.246543
87.0	12.247205
88.0	12.247813
89.0	12.248371
90.0	12.248884
91.0	12.249354
92.0	12.249787
93.0	12.250184
94.0	12.250548
95.0	12.250883
96.0	12.251191
97.0	12.251473
98.0	12.251733
99.0	12.251971
100.0	12.25219