## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[cf.Adult4.small_intestine.FF.2x36mers.canFam3.unique.bam] OUTPUT=cf.Adult4.small_intestine.FF.2x36mers.canFam3.unique.dedup.bam METRICS_FILE=cf.Adult4.small_intestine.FF.2x36mers.canFam3.unique.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Wed Oct 23 09:20:55 PDT 2024

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	43205718	0	0	1200588	0	0.027788	762955310

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1
2.0	1.944944
3.0	2.837864
4.0	3.681623
5.0	4.478928
6.0	5.232337
7.0	5.944266
8.0	6.617
9.0	7.252696
10.0	7.853392
11.0	8.421017
12.0	8.957391
13.0	9.464235
14.0	9.943174
15.0	10.395744
16.0	10.823398
17.0	11.227507
18.0	11.609367
19.0	11.970204
20.0	12.311175
21.0	12.633373
22.0	12.937832
23.0	13.225529
24.0	13.497387
25.0	13.754277
26.0	13.997024
27.0	14.226407
28.0	14.44316
29.0	14.64798
30.0	14.841523
31.0	15.024411
32.0	15.19723
33.0	15.360534
34.0	15.514847
35.0	15.660665
36.0	15.798454
37.0	15.928657
38.0	16.051692
39.0	16.167953
40.0	16.277813
41.0	16.381624
42.0	16.479721
43.0	16.572416
44.0	16.660008
45.0	16.742778
46.0	16.82099
47.0	16.894897
48.0	16.964735
49.0	17.030727
50.0	17.093087
51.0	17.152013
52.0	17.207695
53.0	17.260311
54.0	17.31003
55.0	17.357012
56.0	17.401408
57.0	17.443359
58.0	17.483001
59.0	17.52046
60.0	17.555856
61.0	17.589304
62.0	17.620911
63.0	17.650777
64.0	17.678999
65.0	17.705667
66.0	17.730867
67.0	17.75468
68.0	17.777181
69.0	17.798444
70.0	17.818536
71.0	17.837522
72.0	17.855463
73.0	17.872416
74.0	17.888435
75.0	17.903573
76.0	17.917877
77.0	17.931393
78.0	17.944166
79.0	17.956235
80.0	17.96764
81.0	17.978417
82.0	17.9886
83.0	17.998223
84.0	18.007316
85.0	18.015909
86.0	18.024028
87.0	18.0317
88.0	18.03895
89.0	18.045801
90.0	18.052275
91.0	18.058392
92.0	18.064172
93.0	18.069635
94.0	18.074796
95.0	18.079673
96.0	18.084282
97.0	18.088637
98.0	18.092752
99.0	18.096641
100.0	18.100316