## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[cf.Adult4.pituitary.FF.2x36mers.canFam3.unique.bam] OUTPUT=cf.Adult4.pituitary.FF.2x36mers.canFam3.unique.dedup.bam METRICS_FILE=cf.Adult4.pituitary.FF.2x36mers.canFam3.unique.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Wed Oct 23 09:20:55 PDT 2024

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	42510392	0	0	1473547	0	0.034663	598938104

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1
2.0	1.931484
3.0	2.799146
4.0	3.60736
5.0	4.360198
6.0	5.061455
7.0	5.714664
8.0	6.323118
9.0	6.889883
10.0	7.417816
11.0	7.909577
12.0	8.367644
13.0	8.794327
14.0	9.191775
15.0	9.561991
16.0	9.906842
17.0	10.228064
18.0	10.527278
19.0	10.805991
20.0	11.065608
21.0	11.307437
22.0	11.532696
23.0	11.742522
24.0	11.937971
25.0	12.120029
26.0	12.289613
27.0	12.447578
28.0	12.59472
29.0	12.73178
30.0	12.859449
31.0	12.978371
32.0	13.089145
33.0	13.192329
34.0	13.288444
35.0	13.377973
36.0	13.461367
37.0	13.539048
38.0	13.611407
39.0	13.678808
40.0	13.74159
41.0	13.800072
42.0	13.854546
43.0	13.905288
44.0	13.952553
45.0	13.99658
46.0	14.03759
47.0	14.075791
48.0	14.111374
49.0	14.144519
50.0	14.175393
51.0	14.204152
52.0	14.23094
53.0	14.255893
54.0	14.279136
55.0	14.300787
56.0	14.320954
57.0	14.339739
58.0	14.357238
59.0	14.373537
60.0	14.38872
61.0	14.402862
62.0	14.416036
63.0	14.428307
64.0	14.439737
65.0	14.450384
66.0	14.460301
67.0	14.469539
68.0	14.478144
69.0	14.48616
70.0	14.493626
71.0	14.50058
72.0	14.507059
73.0	14.513093
74.0	14.518714
75.0	14.52395
76.0	14.528827
77.0	14.533369
78.0	14.537601
79.0	14.541543
80.0	14.545214
81.0	14.548634
82.0	14.55182
83.0	14.554788
84.0	14.557552
85.0	14.560126
86.0	14.562525
87.0	14.564759
88.0	14.56684
89.0	14.568778
90.0	14.570584
91.0	14.572266
92.0	14.573832
93.0	14.575291
94.0	14.576651
95.0	14.577917
96.0	14.579096
97.0	14.580195
98.0	14.581218
99.0	14.582171
100.0	14.583059