## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[cf.Adult4.lymph_node.FF.2x36mers.canFam3.unique.bam] OUTPUT=cf.Adult4.lymph_node.FF.2x36mers.canFam3.unique.dedup.bam METRICS_FILE=cf.Adult4.lymph_node.FF.2x36mers.canFam3.unique.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Wed Oct 23 09:20:56 PDT 2024

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	41225507	0	0	2891053	0	0.070128	280022632

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1
2.0	1.863102
3.0	2.608048
4.0	3.251012
5.0	3.805956
6.0	4.284929
7.0	4.698332
8.0	5.055142
9.0	5.363104
10.0	5.628908
11.0	5.858323
12.0	6.056332
13.0	6.227234
14.0	6.37474
15.0	6.502053
16.0	6.611937
17.0	6.706778
18.0	6.788635
19.0	6.859287
20.0	6.920266
21.0	6.972898
22.0	7.018324
23.0	7.057532
24.0	7.091372
25.0	7.120579
26.0	7.145788
27.0	7.167546
28.0	7.186326
29.0	7.202534
30.0	7.216524
31.0	7.228598
32.0	7.23902
33.0	7.248015
34.0	7.255778
35.0	7.262479
36.0	7.268262
37.0	7.273254
38.0	7.277562
39.0	7.281281
40.0	7.28449
41.0	7.28726
42.0	7.289651
43.0	7.291715
44.0	7.293496
45.0	7.295033
46.0	7.29636
47.0	7.297505
48.0	7.298493
49.0	7.299346
50.0	7.300083
51.0	7.300718
52.0	7.301267
53.0	7.30174
54.0	7.302149
55.0	7.302501
56.0	7.302806
57.0	7.303068
58.0	7.303295
59.0	7.303491
60.0	7.30366
61.0	7.303805
62.0	7.303931
63.0	7.30404
64.0	7.304134
65.0	7.304215
66.0	7.304284
67.0	7.304345
68.0	7.304397
69.0	7.304442
70.0	7.30448
71.0	7.304514
72.0	7.304543
73.0	7.304568
74.0	7.304589
75.0	7.304608
76.0	7.304624
77.0	7.304637
78.0	7.304649
79.0	7.30466
80.0	7.304669
81.0	7.304676
82.0	7.304683
83.0	7.304689
84.0	7.304694
85.0	7.304698
86.0	7.304702
87.0	7.304705
88.0	7.304707
89.0	7.30471
90.0	7.304712
91.0	7.304714
92.0	7.304715
93.0	7.304716
94.0	7.304718
95.0	7.304719
96.0	7.304719
97.0	7.30472
98.0	7.304721
99.0	7.304721
100.0	7.304722