## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[cf.Adult4.left_atrium.FF.2x36mers.canFam3.unique.bam] OUTPUT=cf.Adult4.left_atrium.FF.2x36mers.canFam3.unique.dedup.bam METRICS_FILE=cf.Adult4.left_atrium.FF.2x36mers.canFam3.unique.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Wed Oct 23 09:20:56 PDT 2024

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	43480315	0	0	2628802	0	0.06046	344937234

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1
2.0	1.881568
3.0	2.658731
4.0	3.343853
5.0	3.947835
6.0	4.480286
7.0	4.949678
8.0	5.363479
9.0	5.728273
10.0	6.049863
11.0	6.333368
12.0	6.583296
13.0	6.803625
14.0	6.99786
15.0	7.169091
16.0	7.320043
17.0	7.453118
18.0	7.570432
19.0	7.673853
20.0	7.765025
21.0	7.8454
22.0	7.916256
23.0	7.97872
24.0	8.033786
25.0	8.082331
26.0	8.125127
27.0	8.162854
28.0	8.196113
29.0	8.225433
30.0	8.251281
31.0	8.274067
32.0	8.294155
33.0	8.311864
34.0	8.327476
35.0	8.341238
36.0	8.353371
37.0	8.364067
38.0	8.373496
39.0	8.381808
40.0	8.389136
41.0	8.395596
42.0	8.401291
43.0	8.406312
44.0	8.410738
45.0	8.41464
46.0	8.418079
47.0	8.421112
48.0	8.423785
49.0	8.426141
50.0	8.428219
51.0	8.43005
52.0	8.431665
53.0	8.433088
54.0	8.434343
55.0	8.435449
56.0	8.436424
57.0	8.437284
58.0	8.438042
59.0	8.43871
60.0	8.439299
61.0	8.439818
62.0	8.440276
63.0	8.440679
64.0	8.441035
65.0	8.441349
66.0	8.441625
67.0	8.441869
68.0	8.442084
69.0	8.442273
70.0	8.44244
71.0	8.442587
72.0	8.442717
73.0	8.442832
74.0	8.442932
75.0	8.443021
76.0	8.4431
77.0	8.443169
78.0	8.44323
79.0	8.443283
80.0	8.443331
81.0	8.443373
82.0	8.443409
83.0	8.443442
84.0	8.44347
85.0	8.443496
86.0	8.443518
87.0	8.443537
88.0	8.443555
89.0	8.44357
90.0	8.443583
91.0	8.443595
92.0	8.443606
93.0	8.443615
94.0	8.443623
95.0	8.44363
96.0	8.443636
97.0	8.443642
98.0	8.443647
99.0	8.443651
100.0	8.443655