## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[cf.Adult3.salivary.FF.2x36mers.canFam3.unique.bam] OUTPUT=cf.Adult3.salivary.FF.2x36mers.canFam3.unique.dedup.bam METRICS_FILE=cf.Adult3.salivary.FF.2x36mers.canFam3.unique.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Wed Oct 23 09:20:55 PDT 2024

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	44173749	0	0	2216436	0	0.050175	425342069

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1
2.0	1.901356
3.0	2.713799
4.0	3.4461
5.0	4.106164
6.0	4.701117
7.0	5.237381
8.0	5.720747
9.0	6.156431
10.0	6.549138
11.0	6.903107
12.0	7.222159
13.0	7.509739
14.0	7.76895
15.0	8.002592
16.0	8.213187
17.0	8.403008
18.0	8.574104
19.0	8.728323
20.0	8.867329
21.0	8.992623
22.0	9.105557
23.0	9.207351
24.0	9.299104
25.0	9.381806
26.0	9.45635
27.0	9.523541
28.0	9.584104
29.0	9.638692
30.0	9.687896
31.0	9.732246
32.0	9.772221
33.0	9.808253
34.0	9.840731
35.0	9.870005
36.0	9.896391
37.0	9.920175
38.0	9.941612
39.0	9.960935
40.0	9.978351
41.0	9.99405
42.0	10.0082
43.0	10.020954
44.0	10.03245
45.0	10.042812
46.0	10.052152
47.0	10.060571
48.0	10.068159
49.0	10.074998
50.0	10.081163
51.0	10.08672
52.0	10.091729
53.0	10.096243
54.0	10.100313
55.0	10.103981
56.0	10.107287
57.0	10.110266
58.0	10.112952
59.0	10.115373
60.0	10.117556
61.0	10.119523
62.0	10.121295
63.0	10.122894
64.0	10.124334
65.0	10.125632
66.0	10.126802
67.0	10.127857
68.0	10.128808
69.0	10.129665
70.0	10.130437
71.0	10.131134
72.0	10.131761
73.0	10.132327
74.0	10.132837
75.0	10.133296
76.0	10.13371
77.0	10.134084
78.0	10.13442
79.0	10.134724
80.0	10.134997
81.0	10.135244
82.0	10.135466
83.0	10.135666
84.0	10.135846
85.0	10.136009
86.0	10.136156
87.0	10.136288
88.0	10.136407
89.0	10.136514
90.0	10.136611
91.0	10.136698
92.0	10.136777
93.0	10.136848
94.0	10.136912
95.0	10.136969
96.0	10.137021
97.0	10.137068
98.0	10.13711
99.0	10.137148
100.0	10.137182