## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[cf.Adult3.lymph_node.FF.2x36mers.canFam3.unique.bam] OUTPUT=cf.Adult3.lymph_node.FF.2x36mers.canFam3.unique.dedup.bam METRICS_FILE=cf.Adult3.lymph_node.FF.2x36mers.canFam3.unique.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Wed Oct 23 09:20:56 PDT 2024

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	38526137	0	0	2901929	0	0.075324	242727259

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1
2.0	1.853234
3.0	2.581241
4.0	3.202402
5.0	3.732397
6.0	4.184606
7.0	4.570447
8.0	4.899659
9.0	5.180553
10.0	5.420222
11.0	5.624716
12.0	5.799196
13.0	5.948069
14.0	6.075092
15.0	6.183473
16.0	6.275947
17.0	6.354849
18.0	6.42217
19.0	6.479611
20.0	6.528622
21.0	6.57044
22.0	6.60612
23.0	6.636563
24.0	6.662539
25.0	6.684702
26.0	6.703612
27.0	6.719747
28.0	6.733514
29.0	6.74526
30.0	6.755283
31.0	6.763834
32.0	6.77113
33.0	6.777356
34.0	6.782668
35.0	6.7872
36.0	6.791067
37.0	6.794367
38.0	6.797182
39.0	6.799584
40.0	6.801633
41.0	6.803382
42.0	6.804874
43.0	6.806147
44.0	6.807233
45.0	6.80816
46.0	6.808951
47.0	6.809626
48.0	6.810201
49.0	6.810693
50.0	6.811112
51.0	6.811469
52.0	6.811774
53.0	6.812035
54.0	6.812257
55.0	6.812446
56.0	6.812608
57.0	6.812746
58.0	6.812864
59.0	6.812964
60.0	6.81305
61.0	6.813123
62.0	6.813185
63.0	6.813239
64.0	6.813284
65.0	6.813323
66.0	6.813356
67.0	6.813384
68.0	6.813408
69.0	6.813429
70.0	6.813446
71.0	6.813461
72.0	6.813474
73.0	6.813485
74.0	6.813494
75.0	6.813502
76.0	6.813509
77.0	6.813515
78.0	6.81352
79.0	6.813524
80.0	6.813527
81.0	6.81353
82.0	6.813533
83.0	6.813535
84.0	6.813537
85.0	6.813539
86.0	6.81354
87.0	6.813541
88.0	6.813542
89.0	6.813543
90.0	6.813544
91.0	6.813545
92.0	6.813545
93.0	6.813546
94.0	6.813546
95.0	6.813546
96.0	6.813547
97.0	6.813547
98.0	6.813547
99.0	6.813547
100.0	6.813547