## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[cf.Adult3.bladder.FF.2x36mers.canFam3.unique.bam] OUTPUT=cf.Adult3.bladder.FF.2x36mers.canFam3.unique.dedup.bam METRICS_FILE=cf.Adult3.bladder.FF.2x36mers.canFam3.unique.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Wed Oct 23 09:20:55 PDT 2024

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	43643376	0	0	1828917	0	0.041906	506078366

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1
2.0	1.917376
3.0	2.758953
4.0	3.530996
5.0	4.23925
6.0	4.888984
7.0	5.485034
8.0	6.031836
9.0	6.533459
10.0	6.993635
11.0	7.41579
12.0	7.803064
13.0	8.15834
14.0	8.484261
15.0	8.783254
16.0	9.057542
17.0	9.309167
18.0	9.540002
19.0	9.751765
20.0	9.94603
21.0	10.124245
22.0	10.287734
23.0	10.437716
24.0	10.575305
25.0	10.701526
26.0	10.817318
27.0	10.923543
28.0	11.020991
29.0	11.110387
30.0	11.192397
31.0	11.267631
32.0	11.336649
33.0	11.399965
34.0	11.458048
35.0	11.511333
36.0	11.560215
37.0	11.605059
38.0	11.646197
39.0	11.683936
40.0	11.718557
41.0	11.750317
42.0	11.779453
43.0	11.806182
44.0	11.830703
45.0	11.853197
46.0	11.873833
47.0	11.892764
48.0	11.91013
49.0	11.926062
50.0	11.940677
51.0	11.954085
52.0	11.966385
53.0	11.977669
54.0	11.98802
55.0	11.997516
56.0	12.006228
57.0	12.01422
58.0	12.021551
59.0	12.028277
60.0	12.034447
61.0	12.040107
62.0	12.045299
63.0	12.050063
64.0	12.054433
65.0	12.058442
66.0	12.062119
67.0	12.065493
68.0	12.068588
69.0	12.071427
70.0	12.074032
71.0	12.076421
72.0	12.078613
73.0	12.080624
74.0	12.082469
75.0	12.084161
76.0	12.085714
77.0	12.087138
78.0	12.088445
79.0	12.089643
80.0	12.090743
81.0	12.091752
82.0	12.092677
83.0	12.093526
84.0	12.094305
85.0	12.095019
86.0	12.095675
87.0	12.096276
88.0	12.096827
89.0	12.097333
90.0	12.097798
91.0	12.098223
92.0	12.098614
93.0	12.098972
94.0	12.099301
95.0	12.099603
96.0	12.099879
97.0	12.100133
98.0	12.100366
99.0	12.10058
100.0	12.100776