## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[cf.Adult1.spleen.FF.2x36mers.canFam3.unique.bam] OUTPUT=cf.Adult1.spleen.FF.2x36mers.canFam3.unique.dedup.bam METRICS_FILE=cf.Adult1.spleen.FF.2x36mers.canFam3.unique.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Wed Oct 23 09:20:55 PDT 2024

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	41424371	0	0	2362062	0	0.057021	349293900

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1
2.0	1.888168
3.0	2.67701
4.0	3.377634
5.0	3.999906
6.0	4.552587
7.0	5.043461
8.0	5.47944
9.0	5.866662
10.0	6.21058
11.0	6.516037
12.0	6.787335
13.0	7.028292
14.0	7.242302
15.0	7.43238
16.0	7.6012
17.0	7.751141
18.0	7.884314
19.0	8.002594
20.0	8.107646
21.0	8.20095
22.0	8.28382
23.0	8.357422
24.0	8.422793
25.0	8.480853
26.0	8.532421
27.0	8.578221
28.0	8.6189
29.0	8.655029
30.0	8.687118
31.0	8.715619
32.0	8.740932
33.0	8.763414
34.0	8.783382
35.0	8.801117
36.0	8.816869
37.0	8.830859
38.0	8.843284
39.0	8.85432
40.0	8.864122
41.0	8.872828
42.0	8.88056
43.0	8.887427
44.0	8.893526
45.0	8.898944
46.0	8.903755
47.0	8.908029
48.0	8.911824
49.0	8.915195
50.0	8.918189
51.0	8.920848
52.0	8.92321
53.0	8.925308
54.0	8.927171
55.0	8.928826
56.0	8.930295
57.0	8.931601
58.0	8.93276
59.0	8.93379
60.0	8.934704
61.0	8.935517
62.0	8.936238
63.0	8.936879
64.0	8.937448
65.0	8.937953
66.0	8.938402
67.0	8.938801
68.0	8.939155
69.0	8.93947
70.0	8.939749
71.0	8.939997
72.0	8.940217
73.0	8.940413
74.0	8.940587
75.0	8.940741
76.0	8.940878
77.0	8.941
78.0	8.941108
79.0	8.941205
80.0	8.94129
81.0	8.941366
82.0	8.941433
83.0	8.941493
84.0	8.941546
85.0	8.941593
86.0	8.941635
87.0	8.941672
88.0	8.941705
89.0	8.941734
90.0	8.941761
91.0	8.941784
92.0	8.941804
93.0	8.941823
94.0	8.941839
95.0	8.941853
96.0	8.941866
97.0	8.941877
98.0	8.941887
99.0	8.941896
100.0	8.941904