## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[cf.Adult1.salivary.FF.2x36mers.canFam3.unique.bam] OUTPUT=cf.Adult1.salivary.FF.2x36mers.canFam3.unique.dedup.bam METRICS_FILE=cf.Adult1.salivary.FF.2x36mers.canFam3.unique.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Wed Oct 23 09:20:56 PDT 2024

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	57117262	0	0	4544985	0	0.079573	339596145

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1
2.0	1.845192
3.0	2.559541
4.0	3.163303
5.0	3.673598
6.0	4.104894
7.0	4.469423
8.0	4.77752
9.0	5.03792
10.0	5.258009
11.0	5.444026
12.0	5.601246
13.0	5.734127
14.0	5.846437
15.0	5.94136
16.0	6.021589
17.0	6.089397
18.0	6.146709
19.0	6.195148
20.0	6.236088
21.0	6.27069
22.0	6.299936
23.0	6.324654
24.0	6.345545
25.0	6.363203
26.0	6.378127
27.0	6.39074
28.0	6.401401
29.0	6.410411
30.0	6.418027
31.0	6.424464
32.0	6.429904
33.0	6.434502
34.0	6.438388
35.0	6.441673
36.0	6.444449
37.0	6.446795
38.0	6.448778
39.0	6.450454
40.0	6.451871
41.0	6.453068
42.0	6.45408
43.0	6.454935
44.0	6.455658
45.0	6.456269
46.0	6.456786
47.0	6.457222
48.0	6.457591
49.0	6.457903
50.0	6.458166
51.0	6.458389
52.0	6.458577
53.0	6.458736
54.0	6.458871
55.0	6.458985
56.0	6.459081
57.0	6.459162
58.0	6.45923
59.0	6.459288
60.0	6.459337
61.0	6.459379
62.0	6.459414
63.0	6.459443
64.0	6.459468
65.0	6.45949
66.0	6.459507
67.0	6.459523
68.0	6.459535
69.0	6.459546
70.0	6.459555
71.0	6.459563
72.0	6.459569
73.0	6.459575
74.0	6.45958
75.0	6.459584
76.0	6.459587
77.0	6.45959
78.0	6.459592
79.0	6.459594
80.0	6.459596
81.0	6.459597
82.0	6.459598
83.0	6.459599
84.0	6.4596
85.0	6.459601
86.0	6.459602
87.0	6.459602
88.0	6.459603
89.0	6.459603
90.0	6.459603
91.0	6.459604
92.0	6.459604
93.0	6.459604
94.0	6.459604
95.0	6.459604
96.0	6.459604
97.0	6.459605
98.0	6.459605
99.0	6.459605
100.0	6.459605