## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[cf.Adult1.right_ventricle.FF.2x36mers.canFam3.unique.bam] OUTPUT=cf.Adult1.right_ventricle.FF.2x36mers.canFam3.unique.dedup.bam METRICS_FILE=cf.Adult1.right_ventricle.FF.2x36mers.canFam3.unique.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Wed Oct 23 09:20:56 PDT 2024

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	40031206	0	0	3695775	0	0.092322	203241439

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1
2.0	1.82122
3.0	2.495623
4.0	3.049457
5.0	3.504276
6.0	3.877783
7.0	4.184514
8.0	4.436408
9.0	4.643269
10.0	4.813147
11.0	4.952654
12.0	5.06722
13.0	5.161305
14.0	5.238568
15.0	5.302019
16.0	5.354126
17.0	5.396917
18.0	5.432058
19.0	5.460917
20.0	5.484616
21.0	5.504078
22.0	5.520061
23.0	5.533187
24.0	5.543966
25.0	5.552817
26.0	5.560087
27.0	5.566056
28.0	5.570959
29.0	5.574985
30.0	5.578291
31.0	5.581006
32.0	5.583236
33.0	5.585067
34.0	5.586571
35.0	5.587806
36.0	5.58882
37.0	5.589653
38.0	5.590337
39.0	5.590898
40.0	5.591359
41.0	5.591738
42.0	5.592049
43.0	5.592305
44.0	5.592515
45.0	5.592687
46.0	5.592828
47.0	5.592944
48.0	5.59304
49.0	5.593118
50.0	5.593183
51.0	5.593235
52.0	5.593279
53.0	5.593314
54.0	5.593344
55.0	5.593368
56.0	5.593387
57.0	5.593404
58.0	5.593417
59.0	5.593428
60.0	5.593437
61.0	5.593444
62.0	5.59345
63.0	5.593455
64.0	5.593459
65.0	5.593463
66.0	5.593465
67.0	5.593468
68.0	5.59347
69.0	5.593471
70.0	5.593472
71.0	5.593473
72.0	5.593474
73.0	5.593475
74.0	5.593476
75.0	5.593476
76.0	5.593476
77.0	5.593477
78.0	5.593477
79.0	5.593477
80.0	5.593477
81.0	5.593477
82.0	5.593478
83.0	5.593478
84.0	5.593478
85.0	5.593478
86.0	5.593478
87.0	5.593478
88.0	5.593478
89.0	5.593478
90.0	5.593478
91.0	5.593478
92.0	5.593478
93.0	5.593478
94.0	5.593478
95.0	5.593478
96.0	5.593478
97.0	5.593478
98.0	5.593478
99.0	5.593478
100.0	5.593478