## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[cf.Adult1.pancreas.FF.2x36mers.canFam3.unique.bam] OUTPUT=cf.Adult1.pancreas.FF.2x36mers.canFam3.unique.dedup.bam METRICS_FILE=cf.Adult1.pancreas.FF.2x36mers.canFam3.unique.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Wed Oct 23 09:20:56 PDT 2024

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	81452901	0	0	7457500	0	0.091556	417238856

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1
2.0	1.822655
3.0	2.499415
4.0	3.056155
5.0	3.51416
6.0	3.89094
7.0	4.2009
8.0	4.455889
9.0	4.665658
10.0	4.838225
11.0	4.980188
12.0	5.096974
13.0	5.193049
14.0	5.272086
15.0	5.337105
16.0	5.390594
17.0	5.434597
18.0	5.470796
19.0	5.500575
20.0	5.525074
21.0	5.545227
22.0	5.561806
23.0	5.575446
24.0	5.586666
25.0	5.595896
26.0	5.60349
27.0	5.609736
28.0	5.614875
29.0	5.619103
30.0	5.622581
31.0	5.625442
32.0	5.627795
33.0	5.629732
34.0	5.631325
35.0	5.632635
36.0	5.633713
37.0	5.6346
38.0	5.635329
39.0	5.635929
40.0	5.636423
41.0	5.636829
42.0	5.637163
43.0	5.637438
44.0	5.637664
45.0	5.63785
46.0	5.638003
47.0	5.638129
48.0	5.638233
49.0	5.638318
50.0	5.638388
51.0	5.638446
52.0	5.638493
53.0	5.638532
54.0	5.638564
55.0	5.638591
56.0	5.638613
57.0	5.63863
58.0	5.638645
59.0	5.638657
60.0	5.638667
61.0	5.638675
62.0	5.638682
63.0	5.638688
64.0	5.638692
65.0	5.638696
66.0	5.638699
67.0	5.638702
68.0	5.638704
69.0	5.638705
70.0	5.638707
71.0	5.638708
72.0	5.638709
73.0	5.63871
74.0	5.63871
75.0	5.638711
76.0	5.638711
77.0	5.638712
78.0	5.638712
79.0	5.638712
80.0	5.638712
81.0	5.638713
82.0	5.638713
83.0	5.638713
84.0	5.638713
85.0	5.638713
86.0	5.638713
87.0	5.638713
88.0	5.638713
89.0	5.638713
90.0	5.638713
91.0	5.638713
92.0	5.638713
93.0	5.638713
94.0	5.638713
95.0	5.638713
96.0	5.638713
97.0	5.638713
98.0	5.638713
99.0	5.638713
100.0	5.638713