## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[cf.Adult1.lymph_node.FF.2x36mers.canFam3.unique.bam] OUTPUT=cf.Adult1.lymph_node.FF.2x36mers.canFam3.unique.dedup.bam METRICS_FILE=cf.Adult1.lymph_node.FF.2x36mers.canFam3.unique.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Wed Oct 23 09:20:55 PDT 2024

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	38236898	0	0	2503285	0	0.065468	279138565

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1
2.0	1.871986
3.0	2.632346
4.0	3.295369
5.0	3.873516
6.0	4.377652
7.0	4.817252
8.0	5.200577
9.0	5.534831
10.0	5.826296
11.0	6.080449
12.0	6.302067
13.0	6.495315
14.0	6.663824
15.0	6.810762
16.0	6.93889
17.0	7.050616
18.0	7.148039
19.0	7.232991
20.0	7.307068
21.0	7.371661
22.0	7.427986
23.0	7.477101
24.0	7.519928
25.0	7.557273
26.0	7.589837
27.0	7.618232
28.0	7.642993
29.0	7.664584
30.0	7.683411
31.0	7.699827
32.0	7.714142
33.0	7.726625
34.0	7.73751
35.0	7.747001
36.0	7.755277
37.0	7.762494
38.0	7.768787
39.0	7.774274
40.0	7.779059
41.0	7.783232
42.0	7.78687
43.0	7.790042
44.0	7.792809
45.0	7.795221
46.0	7.797325
47.0	7.799159
48.0	7.800758
49.0	7.802153
50.0	7.803369
51.0	7.804429
52.0	7.805354
53.0	7.80616
54.0	7.806863
55.0	7.807476
56.0	7.808011
57.0	7.808477
58.0	7.808884
59.0	7.809238
60.0	7.809547
61.0	7.809817
62.0	7.810052
63.0	7.810257
64.0	7.810435
65.0	7.810591
66.0	7.810727
67.0	7.810845
68.0	7.810949
69.0	7.811039
70.0	7.811117
71.0	7.811186
72.0	7.811246
73.0	7.811298
74.0	7.811343
75.0	7.811383
76.0	7.811417
77.0	7.811447
78.0	7.811474
79.0	7.811496
80.0	7.811516
81.0	7.811534
82.0	7.811549
83.0	7.811562
84.0	7.811574
85.0	7.811584
86.0	7.811593
87.0	7.8116
88.0	7.811607
89.0	7.811613
90.0	7.811618
91.0	7.811622
92.0	7.811626
93.0	7.81163
94.0	7.811632
95.0	7.811635
96.0	7.811637
97.0	7.811639
98.0	7.811641
99.0	7.811642
100.0	7.811644