## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[cf.Adult1.bone_marrow.FF.2x36mers.canFam3.unique.bam] OUTPUT=cf.Adult1.bone_marrow.FF.2x36mers.canFam3.unique.dedup.bam METRICS_FILE=cf.Adult1.bone_marrow.FF.2x36mers.canFam3.unique.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Wed Oct 23 09:20:56 PDT 2024

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	41743422	0	0	2202700	0	0.052768	381499893

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1
2.0	1.896355
3.0	2.699806
4.0	3.419984
5.0	4.065518
6.0	4.644145
7.0	5.162801
8.0	5.6277
9.0	6.044415
10.0	6.417939
11.0	6.752749
12.0	7.052857
13.0	7.321861
14.0	7.562983
15.0	7.779115
16.0	7.972845
17.0	8.146496
18.0	8.302149
19.0	8.441669
20.0	8.566729
21.0	8.678826
22.0	8.779306
23.0	8.869371
24.0	8.950101
25.0	9.022464
26.0	9.087327
27.0	9.145467
28.0	9.197581
29.0	9.244294
30.0	9.286165
31.0	9.323696
32.0	9.357338
33.0	9.387492
34.0	9.414522
35.0	9.438749
36.0	9.460466
37.0	9.479932
38.0	9.49738
39.0	9.51302
40.0	9.527039
41.0	9.539605
42.0	9.550869
43.0	9.560965
44.0	9.570014
45.0	9.578126
46.0	9.585397
47.0	9.591914
48.0	9.597756
49.0	9.602993
50.0	9.607686
51.0	9.611893
52.0	9.615665
53.0	9.619045
54.0	9.622075
55.0	9.624791
56.0	9.627225
57.0	9.629407
58.0	9.631363
59.0	9.633116
60.0	9.634688
61.0	9.636096
62.0	9.637359
63.0	9.638491
64.0	9.639505
65.0	9.640414
66.0	9.64123
67.0	9.64196
68.0	9.642615
69.0	9.643202
70.0	9.643728
71.0	9.6442
72.0	9.644622
73.0	9.645001
74.0	9.645341
75.0	9.645645
76.0	9.645918
77.0	9.646163
78.0	9.646382
79.0	9.646579
80.0	9.646755
81.0	9.646913
82.0	9.647054
83.0	9.647181
84.0	9.647295
85.0	9.647397
86.0	9.647488
87.0	9.64757
88.0	9.647644
89.0	9.647709
90.0	9.647768
91.0	9.647821
92.0	9.647869
93.0	9.647911
94.0	9.647949
95.0	9.647983
96.0	9.648014
97.0	9.648041
98.0	9.648066
99.0	9.648088
100.0	9.648108