## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[ATAC-TestisPortion-P7-Wt-To-R2-L7300_S4-GSM3405375.2x36mers.Talpa_occidentalis-MPIMG_talOcc4v2.1.unique.bam] OUTPUT=ATAC-TestisPortion-P7-Wt-To-R2-L7300_S4-GSM3405375.2x36mers.Talpa_occidentalis-MPIMG_talOcc4v2.1.unique.dedup.bam METRICS_FILE=ATAC-TestisPortion-P7-Wt-To-R2-L7300_S4-GSM3405375.2x36mers.Talpa_occidentalis-MPIMG_talOcc4v2.1.unique.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Tue Oct 08 12:04:59 PDT 2024

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	52136139	0	0	4186481	0	0.080299	307015622

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1
2.0	1.84382
3.0	2.555853
4.0	3.15668
5.0	3.66367
6.0	4.091479
7.0	4.452472
8.0	4.757086
9.0	5.014125
10.0	5.231019
11.0	5.414039
12.0	5.568475
13.0	5.698792
14.0	5.808755
15.0	5.901545
16.0	5.979842
17.0	6.045911
18.0	6.101662
19.0	6.148705
20.0	6.188401
21.0	6.221897
22.0	6.250162
23.0	6.274013
24.0	6.294138
25.0	6.311121
26.0	6.325451
27.0	6.337543
28.0	6.347746
29.0	6.356356
30.0	6.363621
31.0	6.369752
32.0	6.374925
33.0	6.37929
34.0	6.382973
35.0	6.386081
36.0	6.388704
37.0	6.390917
38.0	6.392785
39.0	6.39436
40.0	6.39569
41.0	6.396812
42.0	6.397759
43.0	6.398558
44.0	6.399232
45.0	6.399801
46.0	6.400281
47.0	6.400686
48.0	6.401027
49.0	6.401316
50.0	6.401559
51.0	6.401765
52.0	6.401938
53.0	6.402084
54.0	6.402207
55.0	6.402312
56.0	6.402399
57.0	6.402474
58.0	6.402536
59.0	6.402589
60.0	6.402633
61.0	6.402671
62.0	6.402703
63.0	6.402729
64.0	6.402752
65.0	6.402771
66.0	6.402787
67.0	6.402801
68.0	6.402812
69.0	6.402822
70.0	6.40283
71.0	6.402837
72.0	6.402843
73.0	6.402848
74.0	6.402852
75.0	6.402855
76.0	6.402858
77.0	6.402861
78.0	6.402863
79.0	6.402865
80.0	6.402866
81.0	6.402867
82.0	6.402868
83.0	6.402869
84.0	6.40287
85.0	6.402871
86.0	6.402871
87.0	6.402872
88.0	6.402872
89.0	6.402872
90.0	6.402873
91.0	6.402873
92.0	6.402873
93.0	6.402873
94.0	6.402873
95.0	6.402873
96.0	6.402874
97.0	6.402874
98.0	6.402874
99.0	6.402874
100.0	6.402874