## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[ATAC-TestisPortion-P7-Wt-To-R1-L7299_S3-GSM3405374.2x36mers.Talpa_occidentalis-MPIMG_talOcc4v2.1.unique.bam] OUTPUT=ATAC-TestisPortion-P7-Wt-To-R1-L7299_S3-GSM3405374.2x36mers.Talpa_occidentalis-MPIMG_talOcc4v2.1.unique.dedup.bam METRICS_FILE=ATAC-TestisPortion-P7-Wt-To-R1-L7299_S3-GSM3405374.2x36mers.Talpa_occidentalis-MPIMG_talOcc4v2.1.unique.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Tue Oct 08 12:04:59 PDT 2024

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	58806199	0	0	3891093	0	0.066168	424543657

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1
2.0	1.870649
3.0	2.628679
4.0	3.288657
5.0	3.863266
6.0	4.363549
7.0	4.79912
8.0	5.17835
9.0	5.508525
10.0	5.795993
11.0	6.046276
12.0	6.264185
13.0	6.453907
14.0	6.619088
15.0	6.762903
16.0	6.888115
17.0	6.997131
18.0	7.092046
19.0	7.174684
20.0	7.246632
21.0	7.309273
22.0	7.363812
23.0	7.411296
24.0	7.452639
25.0	7.488633
26.0	7.519972
27.0	7.547256
28.0	7.571012
29.0	7.591695
30.0	7.609702
31.0	7.62538
32.0	7.63903
33.0	7.650915
34.0	7.661262
35.0	7.670271
36.0	7.678115
37.0	7.684943
38.0	7.690889
39.0	7.696066
40.0	7.700573
41.0	7.704497
42.0	7.707913
43.0	7.710887
44.0	7.713477
45.0	7.715732
46.0	7.717695
47.0	7.719404
48.0	7.720892
49.0	7.722188
50.0	7.723316
51.0	7.724298
52.0	7.725153
53.0	7.725898
54.0	7.726546
55.0	7.72711
56.0	7.727601
57.0	7.728029
58.0	7.728402
59.0	7.728726
60.0	7.729008
61.0	7.729254
62.0	7.729468
63.0	7.729654
64.0	7.729817
65.0	7.729958
66.0	7.730081
67.0	7.730188
68.0	7.730281
69.0	7.730362
70.0	7.730433
71.0	7.730494
72.0	7.730548
73.0	7.730595
74.0	7.730635
75.0	7.730671
76.0	7.730701
77.0	7.730728
78.0	7.730751
79.0	7.730772
80.0	7.730789
81.0	7.730805
82.0	7.730818
83.0	7.73083
84.0	7.73084
85.0	7.730849
86.0	7.730857
87.0	7.730863
88.0	7.730869
89.0	7.730874
90.0	7.730879
91.0	7.730883
92.0	7.730886
93.0	7.730889
94.0	7.730891
95.0	7.730894
96.0	7.730895
97.0	7.730897
98.0	7.730899
99.0	7.7309
100.0	7.730901