## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[day0_3_ATAC-seq-GSM3722648.2x36mers.canFam3.unique.bam] OUTPUT=day0_3_ATAC-seq-GSM3722648.2x36mers.canFam3.unique.dedup.bam METRICS_FILE=day0_3_ATAC-seq-GSM3722648.2x36mers.canFam3.unique.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Tue Oct 08 08:01:35 PDT 2024

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	52468106	0	0	5103258	0	0.097264	251931446

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1
2.0	1.811993
3.0	2.471326
4.0	3.0067
5.0	3.441419
6.0	3.794409
7.0	4.081034
8.0	4.313771
9.0	4.502753
10.0	4.656204
11.0	4.780806
12.0	4.881981
13.0	4.964135
14.0	5.030843
15.0	5.08501
16.0	5.128993
17.0	5.164707
18.0	5.193707
19.0	5.217254
20.0	5.236374
21.0	5.2519
22.0	5.264506
23.0	5.274743
24.0	5.283055
25.0	5.289804
26.0	5.295285
27.0	5.299735
28.0	5.303348
29.0	5.306282
30.0	5.308664
31.0	5.310599
32.0	5.31217
33.0	5.313445
34.0	5.314481
35.0	5.315322
36.0	5.316005
37.0	5.316559
38.0	5.317009
39.0	5.317375
40.0	5.317672
41.0	5.317913
42.0	5.318109
43.0	5.318268
44.0	5.318397
45.0	5.318501
46.0	5.318586
47.0	5.318656
48.0	5.318712
49.0	5.318757
50.0	5.318794
51.0	5.318824
52.0	5.318849
53.0	5.318868
54.0	5.318885
55.0	5.318898
56.0	5.318908
57.0	5.318917
58.0	5.318924
59.0	5.318929
60.0	5.318934
61.0	5.318938
62.0	5.318941
63.0	5.318943
64.0	5.318945
65.0	5.318947
66.0	5.318948
67.0	5.318949
68.0	5.31895
69.0	5.318951
70.0	5.318951
71.0	5.318952
72.0	5.318952
73.0	5.318953
74.0	5.318953
75.0	5.318953
76.0	5.318953
77.0	5.318953
78.0	5.318953
79.0	5.318954
80.0	5.318954
81.0	5.318954
82.0	5.318954
83.0	5.318954
84.0	5.318954
85.0	5.318954
86.0	5.318954
87.0	5.318954
88.0	5.318954
89.0	5.318954
90.0	5.318954
91.0	5.318954
92.0	5.318954
93.0	5.318954
94.0	5.318954
95.0	5.318954
96.0	5.318954
97.0	5.318954
98.0	5.318954
99.0	5.318954
100.0	5.318954