## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[day0_2_ATAC-seq-GSM3722647.2x36mers.canFam3.unique.bam] OUTPUT=day0_2_ATAC-seq-GSM3722647.2x36mers.canFam3.unique.dedup.bam METRICS_FILE=day0_2_ATAC-seq-GSM3722647.2x36mers.canFam3.unique.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Tue Oct 08 08:01:35 PDT 2024

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	36567016	0	0	3157341	0	0.086344	199379030

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1
2.0	1.832431
3.0	2.525373
4.0	3.1022
5.0	3.582368
6.0	3.982076
7.0	4.314805
8.0	4.591779
9.0	4.822341
10.0	5.014267
11.0	5.174033
12.0	5.307028
13.0	5.417736
14.0	5.509893
15.0	5.586608
16.0	5.650468
17.0	5.703626
18.0	5.747877
19.0	5.784713
20.0	5.815377
21.0	5.840902
22.0	5.86215
23.0	5.879837
24.0	5.894561
25.0	5.906817
26.0	5.91702
27.0	5.925513
28.0	5.932583
29.0	5.938468
30.0	5.943367
31.0	5.947445
32.0	5.95084
33.0	5.953665
34.0	5.956018
35.0	5.957976
36.0	5.959606
37.0	5.960963
38.0	5.962092
39.0	5.963033
40.0	5.963815
41.0	5.964467
42.0	5.965009
43.0	5.965461
44.0	5.965836
45.0	5.966149
46.0	5.96641
47.0	5.966626
48.0	5.966807
49.0	5.966957
50.0	5.967082
51.0	5.967186
52.0	5.967273
53.0	5.967345
54.0	5.967405
55.0	5.967455
56.0	5.967497
57.0	5.967531
58.0	5.96756
59.0	5.967584
60.0	5.967604
61.0	5.967621
62.0	5.967635
63.0	5.967646
64.0	5.967656
65.0	5.967664
66.0	5.96767
67.0	5.967676
68.0	5.96768
69.0	5.967684
70.0	5.967688
71.0	5.96769
72.0	5.967692
73.0	5.967694
74.0	5.967696
75.0	5.967697
76.0	5.967698
77.0	5.967699
78.0	5.9677
79.0	5.9677
80.0	5.967701
81.0	5.967701
82.0	5.967702
83.0	5.967702
84.0	5.967702
85.0	5.967702
86.0	5.967703
87.0	5.967703
88.0	5.967703
89.0	5.967703
90.0	5.967703
91.0	5.967703
92.0	5.967703
93.0	5.967703
94.0	5.967703
95.0	5.967703
96.0	5.967703
97.0	5.967703
98.0	5.967703
99.0	5.967703
100.0	5.967703