## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[day0_1_ATAC-seq-GSM3722646.2x36mers.canFam3.unique.bam] OUTPUT=day0_1_ATAC-seq-GSM3722646.2x36mers.canFam3.unique.dedup.bam METRICS_FILE=day0_1_ATAC-seq-GSM3722646.2x36mers.canFam3.unique.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Tue Oct 08 08:01:35 PDT 2024

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	29617728	0	0	2541870	0	0.085823	162531410

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1
2.0	1.833412
3.0	2.527986
4.0	3.106853
5.0	3.589287
6.0	3.991353
7.0	4.32644
8.0	4.605705
9.0	4.838448
10.0	5.032418
11.0	5.194075
12.0	5.328802
13.0	5.441085
14.0	5.534663
15.0	5.612652
16.0	5.677649
17.0	5.731818
18.0	5.776963
19.0	5.814588
20.0	5.845945
21.0	5.872078
22.0	5.893857
23.0	5.912009
24.0	5.927136
25.0	5.939744
26.0	5.950251
27.0	5.959008
28.0	5.966306
29.0	5.972388
30.0	5.977457
31.0	5.981682
32.0	5.985203
33.0	5.988137
34.0	5.990582
35.0	5.99262
36.0	5.994319
37.0	5.995735
38.0	5.996914
39.0	5.997898
40.0	5.998717
41.0	5.9994
42.0	5.999969
43.0	6.000444
44.0	6.000839
45.0	6.001168
46.0	6.001443
47.0	6.001672
48.0	6.001862
49.0	6.002021
50.0	6.002154
51.0	6.002264
52.0	6.002356
53.0	6.002433
54.0	6.002497
55.0	6.00255
56.0	6.002595
57.0	6.002632
58.0	6.002662
59.0	6.002688
60.0	6.002709
61.0	6.002727
62.0	6.002742
63.0	6.002755
64.0	6.002765
65.0	6.002774
66.0	6.002781
67.0	6.002787
68.0	6.002792
69.0	6.002796
70.0	6.002799
71.0	6.002802
72.0	6.002805
73.0	6.002807
74.0	6.002808
75.0	6.00281
76.0	6.002811
77.0	6.002812
78.0	6.002813
79.0	6.002813
80.0	6.002814
81.0	6.002814
82.0	6.002815
83.0	6.002815
84.0	6.002815
85.0	6.002815
86.0	6.002816
87.0	6.002816
88.0	6.002816
89.0	6.002816
90.0	6.002816
91.0	6.002816
92.0	6.002816
93.0	6.002816
94.0	6.002816
95.0	6.002816
96.0	6.002816
97.0	6.002816
98.0	6.002816
99.0	6.002817
100.0	6.002817