## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[3D_2_ATAC-seq-GSM3722643.2x36mers.canFam3.unique.bam] OUTPUT=3D_2_ATAC-seq-GSM3722643.2x36mers.canFam3.unique.dedup.bam METRICS_FILE=3D_2_ATAC-seq-GSM3722643.2x36mers.canFam3.unique.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Tue Oct 08 08:01:35 PDT 2024

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	45304303	0	0	13481738	0	0.297582	60121104

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1
2.0	1.470692
3.0	1.692243
4.0	1.796526
5.0	1.845611
6.0	1.868715
7.0	1.87959
8.0	1.884708
9.0	1.887118
10.0	1.888252
11.0	1.888785
12.0	1.889037
13.0	1.889155
14.0	1.889211
15.0	1.889237
16.0	1.889249
17.0	1.889255
18.0	1.889258
19.0	1.889259
20.0	1.88926
21.0	1.88926
22.0	1.88926
23.0	1.88926
24.0	1.88926
25.0	1.88926
26.0	1.88926
27.0	1.88926
28.0	1.88926
29.0	1.88926
30.0	1.88926
31.0	1.88926
32.0	1.88926
33.0	1.88926
34.0	1.88926
35.0	1.88926
36.0	1.88926
37.0	1.88926
38.0	1.88926
39.0	1.88926
40.0	1.88926
41.0	1.88926
42.0	1.88926
43.0	1.88926
44.0	1.88926
45.0	1.88926
46.0	1.88926
47.0	1.88926
48.0	1.88926
49.0	1.88926
50.0	1.88926
51.0	1.88926
52.0	1.88926
53.0	1.88926
54.0	1.88926
55.0	1.88926
56.0	1.88926
57.0	1.88926
58.0	1.88926
59.0	1.88926
60.0	1.88926
61.0	1.88926
62.0	1.88926
63.0	1.88926
64.0	1.88926
65.0	1.88926
66.0	1.88926
67.0	1.88926
68.0	1.88926
69.0	1.88926
70.0	1.88926
71.0	1.88926
72.0	1.88926
73.0	1.88926
74.0	1.88926
75.0	1.88926
76.0	1.88926
77.0	1.88926
78.0	1.88926
79.0	1.88926
80.0	1.88926
81.0	1.88926
82.0	1.88926
83.0	1.88926
84.0	1.88926
85.0	1.88926
86.0	1.88926
87.0	1.88926
88.0	1.88926
89.0	1.88926
90.0	1.88926
91.0	1.88926
92.0	1.88926
93.0	1.88926
94.0	1.88926
95.0	1.88926
96.0	1.88926
97.0	1.88926
98.0	1.88926
99.0	1.88926
100.0	1.88926