## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[3D_1_ATAC-seq-GSM3722642.2x36mers.canFam3.unique.bam] OUTPUT=3D_1_ATAC-seq-GSM3722642.2x36mers.canFam3.unique.dedup.bam METRICS_FILE=3D_1_ATAC-seq-GSM3722642.2x36mers.canFam3.unique.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Tue Oct 08 08:01:35 PDT 2024

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	33795903	0	0	3336385	0	0.098722	159706646

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1
2.0	1.809278
3.0	2.46421
4.0	2.994232
5.0	3.423167
6.0	3.770295
7.0	4.051218
8.0	4.278563
9.0	4.462548
10.0	4.611443
11.0	4.731941
12.0	4.829458
13.0	4.908375
14.0	4.972242
15.0	5.023928
16.0	5.065756
17.0	5.099606
18.0	5.127001
19.0	5.149171
20.0	5.167112
21.0	5.181632
22.0	5.193383
23.0	5.202892
24.0	5.210588
25.0	5.216816
26.0	5.221856
27.0	5.225935
28.0	5.229236
29.0	5.231907
30.0	5.234069
31.0	5.235819
32.0	5.237235
33.0	5.238381
34.0	5.239308
35.0	5.240058
36.0	5.240666
37.0	5.241157
38.0	5.241555
39.0	5.241877
40.0	5.242137
41.0	5.242348
42.0	5.242519
43.0	5.242657
44.0	5.242769
45.0	5.242859
46.0	5.242932
47.0	5.242991
48.0	5.243039
49.0	5.243078
50.0	5.24311
51.0	5.243135
52.0	5.243155
53.0	5.243172
54.0	5.243186
55.0	5.243196
56.0	5.243205
57.0	5.243212
58.0	5.243218
59.0	5.243223
60.0	5.243227
61.0	5.24323
62.0	5.243232
63.0	5.243234
64.0	5.243236
65.0	5.243237
66.0	5.243238
67.0	5.243239
68.0	5.24324
69.0	5.24324
70.0	5.243241
71.0	5.243241
72.0	5.243241
73.0	5.243242
74.0	5.243242
75.0	5.243242
76.0	5.243242
77.0	5.243242
78.0	5.243242
79.0	5.243242
80.0	5.243242
81.0	5.243243
82.0	5.243243
83.0	5.243243
84.0	5.243243
85.0	5.243243
86.0	5.243243
87.0	5.243243
88.0	5.243243
89.0	5.243243
90.0	5.243243
91.0	5.243243
92.0	5.243243
93.0	5.243243
94.0	5.243243
95.0	5.243243
96.0	5.243243
97.0	5.243243
98.0	5.243243
99.0	5.243243
100.0	5.243243