## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[2D_2_ATAC-seq-GSM3722645.2x36mers.canFam3.unique.bam] OUTPUT=2D_2_ATAC-seq-GSM3722645.2x36mers.canFam3.unique.dedup.bam METRICS_FILE=2D_2_ATAC-seq-GSM3722645.2x36mers.canFam3.unique.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Tue Oct 08 08:01:35 PDT 2024

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	47238818	0	0	13297318	0	0.281491	67285833

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1
2.0	1.495562
3.0	1.741145
4.0	1.862846
5.0	1.923157
6.0	1.953044
7.0	1.967855
8.0	1.975195
9.0	1.978833
10.0	1.980635
11.0	1.981528
12.0	1.981971
13.0	1.98219
14.0	1.982299
15.0	1.982353
16.0	1.98238
17.0	1.982393
18.0	1.9824
19.0	1.982403
20.0	1.982404
21.0	1.982405
22.0	1.982406
23.0	1.982406
24.0	1.982406
25.0	1.982406
26.0	1.982406
27.0	1.982406
28.0	1.982406
29.0	1.982406
30.0	1.982406
31.0	1.982406
32.0	1.982406
33.0	1.982406
34.0	1.982406
35.0	1.982406
36.0	1.982406
37.0	1.982406
38.0	1.982406
39.0	1.982406
40.0	1.982406
41.0	1.982406
42.0	1.982406
43.0	1.982406
44.0	1.982406
45.0	1.982406
46.0	1.982406
47.0	1.982406
48.0	1.982406
49.0	1.982406
50.0	1.982406
51.0	1.982406
52.0	1.982406
53.0	1.982406
54.0	1.982406
55.0	1.982406
56.0	1.982406
57.0	1.982406
58.0	1.982406
59.0	1.982406
60.0	1.982406
61.0	1.982406
62.0	1.982406
63.0	1.982406
64.0	1.982406
65.0	1.982406
66.0	1.982406
67.0	1.982406
68.0	1.982406
69.0	1.982406
70.0	1.982406
71.0	1.982406
72.0	1.982406
73.0	1.982406
74.0	1.982406
75.0	1.982406
76.0	1.982406
77.0	1.982406
78.0	1.982406
79.0	1.982406
80.0	1.982406
81.0	1.982406
82.0	1.982406
83.0	1.982406
84.0	1.982406
85.0	1.982406
86.0	1.982406
87.0	1.982406
88.0	1.982406
89.0	1.982406
90.0	1.982406
91.0	1.982406
92.0	1.982406
93.0	1.982406
94.0	1.982406
95.0	1.982406
96.0	1.982406
97.0	1.982406
98.0	1.982406
99.0	1.982406
100.0	1.982406