## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[MECLP5-GSM7053858.2x36mers.Capra_hircus-ARS1.2.unique.bam] OUTPUT=MECLP5-GSM7053858.2x36mers.Capra_hircus-ARS1.2.unique.dedup.bam METRICS_FILE=MECLP5-GSM7053858.2x36mers.Capra_hircus-ARS1.2.unique.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Tue Oct 08 07:53:37 PDT 2024

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	14653222	0	0	1952284	0	0.133232	49989874

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1
2.0	1.74593
3.0	2.302341
4.0	2.717385
5.0	3.026978
6.0	3.257913
7.0	3.430175
8.0	3.558669
9.0	3.654517
10.0	3.726013
11.0	3.779344
12.0	3.819126
13.0	3.8488
14.0	3.870934
15.0	3.887445
16.0	3.899761
17.0	3.908948
18.0	3.915801
19.0	3.920912
20.0	3.924725
21.0	3.92757
22.0	3.929691
23.0	3.931274
24.0	3.932454
25.0	3.933335
26.0	3.933991
27.0	3.934481
28.0	3.934847
29.0	3.935119
30.0	3.935323
31.0	3.935475
32.0	3.935588
33.0	3.935672
34.0	3.935735
35.0	3.935782
36.0	3.935817
37.0	3.935843
38.0	3.935863
39.0	3.935877
40.0	3.935888
41.0	3.935896
42.0	3.935902
43.0	3.935907
44.0	3.93591
45.0	3.935912
46.0	3.935914
47.0	3.935916
48.0	3.935917
49.0	3.935918
50.0	3.935918
51.0	3.935919
52.0	3.935919
53.0	3.935919
54.0	3.935919
55.0	3.935919
56.0	3.93592
57.0	3.93592
58.0	3.93592
59.0	3.93592
60.0	3.93592
61.0	3.93592
62.0	3.93592
63.0	3.93592
64.0	3.93592
65.0	3.93592
66.0	3.93592
67.0	3.93592
68.0	3.93592
69.0	3.93592
70.0	3.93592
71.0	3.93592
72.0	3.93592
73.0	3.93592
74.0	3.93592
75.0	3.93592
76.0	3.93592
77.0	3.93592
78.0	3.93592
79.0	3.93592
80.0	3.93592
81.0	3.93592
82.0	3.93592
83.0	3.93592
84.0	3.93592
85.0	3.93592
86.0	3.93592
87.0	3.93592
88.0	3.93592
89.0	3.93592
90.0	3.93592
91.0	3.93592
92.0	3.93592
93.0	3.93592
94.0	3.93592
95.0	3.93592
96.0	3.93592
97.0	3.93592
98.0	3.93592
99.0	3.93592
100.0	3.93592