## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[MECLP2-GSM7053857.2x36mers.Capra_hircus-ARS1.2.unique.bam] OUTPUT=MECLP2-GSM7053857.2x36mers.Capra_hircus-ARS1.2.unique.dedup.bam METRICS_FILE=MECLP2-GSM7053857.2x36mers.Capra_hircus-ARS1.2.unique.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Tue Oct 08 07:53:37 PDT 2024

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	13267788	0	0	1172387	0	0.088363	70584132

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1
2.0	1.828639
3.0	2.51528
4.0	3.084258
5.0	3.555735
6.0	3.946419
7.0	4.270155
8.0	4.538415
9.0	4.760705
10.0	4.944904
11.0	5.097538
12.0	5.224016
13.0	5.328821
14.0	5.415666
15.0	5.48763
16.0	5.547262
17.0	5.596675
18.0	5.63762
19.0	5.671549
20.0	5.699664
21.0	5.722961
22.0	5.742266
23.0	5.758263
24.0	5.771519
25.0	5.782503
26.0	5.791604
27.0	5.799147
28.0	5.805396
29.0	5.810575
30.0	5.814866
31.0	5.818422
32.0	5.821369
33.0	5.82381
34.0	5.825834
35.0	5.82751
36.0	5.828899
37.0	5.830051
38.0	5.831005
39.0	5.831795
40.0	5.83245
41.0	5.832993
42.0	5.833443
43.0	5.833815
44.0	5.834124
45.0	5.83438
46.0	5.834592
47.0	5.834768
48.0	5.834913
49.0	5.835034
50.0	5.835134
51.0	5.835217
52.0	5.835285
53.0	5.835342
54.0	5.835389
55.0	5.835428
56.0	5.835461
57.0	5.835488
58.0	5.83551
59.0	5.835528
60.0	5.835544
61.0	5.835556
62.0	5.835567
63.0	5.835575
64.0	5.835583
65.0	5.835589
66.0	5.835593
67.0	5.835598
68.0	5.835601
69.0	5.835604
70.0	5.835606
71.0	5.835608
72.0	5.83561
73.0	5.835611
74.0	5.835612
75.0	5.835613
76.0	5.835614
77.0	5.835614
78.0	5.835615
79.0	5.835615
80.0	5.835616
81.0	5.835616
82.0	5.835616
83.0	5.835616
84.0	5.835617
85.0	5.835617
86.0	5.835617
87.0	5.835617
88.0	5.835617
89.0	5.835617
90.0	5.835617
91.0	5.835617
92.0	5.835617
93.0	5.835617
94.0	5.835617
95.0	5.835617
96.0	5.835617
97.0	5.835617
98.0	5.835617
99.0	5.835617
100.0	5.835617