## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[MECDP3-GSM7053855.2x36mers.Capra_hircus-ARS1.2.unique.bam] OUTPUT=MECDP3-GSM7053855.2x36mers.Capra_hircus-ARS1.2.unique.dedup.bam METRICS_FILE=MECDP3-GSM7053855.2x36mers.Capra_hircus-ARS1.2.unique.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Tue Oct 08 07:53:37 PDT 2024

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	19161757	0	0	2322754	0	0.121218	72512895

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1
2.0	1.767779
3.0	2.357264
4.0	2.809858
5.0	3.157351
6.0	3.424148
7.0	3.62899
8.0	3.786263
9.0	3.907014
10.0	3.999724
11.0	4.070905
12.0	4.125556
13.0	4.167516
14.0	4.199732
15.0	4.224467
16.0	4.243458
17.0	4.258039
18.0	4.269233
19.0	4.277829
20.0	4.284428
21.0	4.289495
22.0	4.293385
23.0	4.296371
24.0	4.298665
25.0	4.300425
26.0	4.301777
27.0	4.302815
28.0	4.303612
29.0	4.304224
30.0	4.304693
31.0	4.305054
32.0	4.305331
33.0	4.305543
34.0	4.305707
35.0	4.305832
36.0	4.305928
37.0	4.306002
38.0	4.306059
39.0	4.306102
40.0	4.306136
41.0	4.306161
42.0	4.306181
43.0	4.306196
44.0	4.306208
45.0	4.306217
46.0	4.306224
47.0	4.306229
48.0	4.306233
49.0	4.306236
50.0	4.306238
51.0	4.30624
52.0	4.306242
53.0	4.306243
54.0	4.306244
55.0	4.306244
56.0	4.306245
57.0	4.306245
58.0	4.306245
59.0	4.306246
60.0	4.306246
61.0	4.306246
62.0	4.306246
63.0	4.306246
64.0	4.306246
65.0	4.306246
66.0	4.306246
67.0	4.306246
68.0	4.306246
69.0	4.306246
70.0	4.306246
71.0	4.306246
72.0	4.306246
73.0	4.306246
74.0	4.306246
75.0	4.306246
76.0	4.306246
77.0	4.306246
78.0	4.306246
79.0	4.306246
80.0	4.306246
81.0	4.306246
82.0	4.306246
83.0	4.306246
84.0	4.306246
85.0	4.306246
86.0	4.306246
87.0	4.306246
88.0	4.306246
89.0	4.306246
90.0	4.306246
91.0	4.306246
92.0	4.306246
93.0	4.306246
94.0	4.306246
95.0	4.306246
96.0	4.306246
97.0	4.306246
98.0	4.306246
99.0	4.306246
100.0	4.306246