## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[MECDP2-GSM7053854.2x36mers.Capra_hircus-ARS1.2.unique.bam] OUTPUT=MECDP2-GSM7053854.2x36mers.Capra_hircus-ARS1.2.unique.dedup.bam METRICS_FILE=MECDP2-GSM7053854.2x36mers.Capra_hircus-ARS1.2.unique.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Tue Oct 08 07:53:38 PDT 2024

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	827825	0	0	17855	0	0.021569	18913596

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1
2.0	1.957175
3.0	2.87336
4.0	3.750309
5.0	4.589703
6.0	5.39315
7.0	6.16219
8.0	6.898295
9.0	7.602878
10.0	8.277286
11.0	8.922814
12.0	9.540696
13.0	10.132118
14.0	10.698213
15.0	11.240065
16.0	11.758712
17.0	12.255148
18.0	12.730324
19.0	13.185151
20.0	13.620501
21.0	14.037206
22.0	14.436066
23.0	14.817845
24.0	15.183275
25.0	15.533055
26.0	15.867856
27.0	16.188319
28.0	16.495058
29.0	16.788661
30.0	17.069691
31.0	17.338686
32.0	17.596161
33.0	17.84261
34.0	18.078505
35.0	18.304297
36.0	18.52042
37.0	18.727288
38.0	18.925296
39.0	19.114825
40.0	19.296238
41.0	19.469881
42.0	19.636088
43.0	19.795178
44.0	19.947454
45.0	20.09321
46.0	20.232723
47.0	20.366262
48.0	20.494082
49.0	20.616428
50.0	20.733534
51.0	20.845626
52.0	20.952917
53.0	21.055614
54.0	21.153913
55.0	21.248002
56.0	21.338061
57.0	21.424264
58.0	21.506775
59.0	21.585753
60.0	21.661349
61.0	21.733707
62.0	21.802966
63.0	21.86926
64.0	21.932714
65.0	21.993451
66.0	22.051587
67.0	22.107233
68.0	22.160497
69.0	22.211479
70.0	22.260278
71.0	22.306987
72.0	22.351696
73.0	22.39449
74.0	22.435452
75.0	22.474659
76.0	22.512188
77.0	22.548109
78.0	22.582492
79.0	22.615402
80.0	22.646903
81.0	22.677055
82.0	22.705916
83.0	22.733541
84.0	22.759983
85.0	22.785292
86.0	22.809518
87.0	22.832706
88.0	22.854901
89.0	22.876146
90.0	22.89648
91.0	22.915944
92.0	22.934575
93.0	22.952407
94.0	22.969476
95.0	22.985814
96.0	23.001453
97.0	23.016421
98.0	23.030749
99.0	23.044463
100.0	23.057589