## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[MECDP1-GSM7053853.2x36mers.Capra_hircus-ARS1.2.unique.bam] OUTPUT=MECDP1-GSM7053853.2x36mers.Capra_hircus-ARS1.2.unique.dedup.bam METRICS_FILE=MECDP1-GSM7053853.2x36mers.Capra_hircus-ARS1.2.unique.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Tue Oct 08 07:53:38 PDT 2024

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	2799108	0	0	89112	0	0.031836	43023490

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1
2.0	1.937011
3.0	2.815001
4.0	3.637688
5.0	4.408554
6.0	5.130865
7.0	5.807678
8.0	6.44186
9.0	7.036095
10.0	7.5929
11.0	8.114633
12.0	8.603502
13.0	9.061578
14.0	9.490801
15.0	9.892987
16.0	10.26984
17.0	10.622956
18.0	10.953829
19.0	11.263861
20.0	11.554365
21.0	11.826569
22.0	12.081629
23.0	12.320622
24.0	12.544561
25.0	12.754395
26.0	12.951012
27.0	13.135243
28.0	13.307871
29.0	13.469625
30.0	13.62119
31.0	13.763208
32.0	13.896281
33.0	14.020971
34.0	14.137808
35.0	14.247285
36.0	14.349866
37.0	14.445986
38.0	14.536051
39.0	14.620444
40.0	14.69952
41.0	14.773616
42.0	14.843044
43.0	14.908099
44.0	14.969057
45.0	15.026174
46.0	15.079694
47.0	15.129843
48.0	15.176833
49.0	15.220863
50.0	15.26212
51.0	15.300778
52.0	15.337001
53.0	15.370943
54.0	15.402746
55.0	15.432546
56.0	15.46047
57.0	15.486634
58.0	15.51115
59.0	15.534122
60.0	15.555647
61.0	15.575816
62.0	15.594715
63.0	15.612423
64.0	15.629016
65.0	15.644564
66.0	15.659132
67.0	15.672783
68.0	15.685574
69.0	15.697559
70.0	15.70879
71.0	15.719313
72.0	15.729173
73.0	15.738412
74.0	15.747069
75.0	15.755181
76.0	15.762781
77.0	15.769903
78.0	15.776577
79.0	15.78283
80.0	15.788689
81.0	15.794179
82.0	15.799324
83.0	15.804144
84.0	15.808661
85.0	15.812893
86.0	15.816858
87.0	15.820574
88.0	15.824056
89.0	15.827318
90.0	15.830375
91.0	15.83324
92.0	15.835924
93.0	15.838439
94.0	15.840795
95.0	15.843003
96.0	15.845072
97.0	15.847011
98.0	15.848827
99.0	15.850529
100.0	15.852124