python /oak/stanford/groups/akundaje/marinovg/code/ATAC/ATACTSSscore.py 11_46-ATAC-Seq-GSM4233081.2x36mers.GCF_003339765.1_Mmul_10_genomic.unique.dedup.TSS_profile 100 2000 >> ATACTSSscore.txt
python /oak/stanford/groups/akundaje/marinovg/code/ATAC/ATACTSSscore.py 2_46-ATAC-Seq-GSM4233075.2x36mers.GCF_003339765.1_Mmul_10_genomic.unique.dedup.TSS_profile 100 2000 >> ATACTSSscore.txt
python /oak/stanford/groups/akundaje/marinovg/code/ATAC/ATACTSSscore.py 6_46-ATAC-Seq-GSM4233077.2x36mers.GCF_003339765.1_Mmul_10_genomic.unique.dedup.TSS_profile 100 2000 >> ATACTSSscore.txt
python /oak/stanford/groups/akundaje/marinovg/code/ATAC/ATACTSSscore.py 7_46-ATAC-Seq-GSM4233078.2x36mers.GCF_003339765.1_Mmul_10_genomic.unique.dedup.TSS_profile 100 2000 >> ATACTSSscore.txt
python /oak/stanford/groups/akundaje/marinovg/code/ATAC/ATACTSSscore.py 8_46-ATAC-Seq-GSM4233079.2x36mers.GCF_003339765.1_Mmul_10_genomic.unique.dedup.TSS_profile 100 2000 >> ATACTSSscore.txt
python /oak/stanford/groups/akundaje/marinovg/code/ATAC/ATACTSSscore.py 3_2-ATAC-Seq-GSM3679591.2x36mers.GCF_003339765.1_Mmul_10_genomic.unique.dedup.TSS_profile 100 2000 >> ATACTSSscore.txt
python /oak/stanford/groups/akundaje/marinovg/code/ATAC/ATACTSSscore.py 6_25-ATAC-Seq-GSM3679600.2x36mers.GCF_003339765.1_Mmul_10_genomic.unique.dedup.TSS_profile 100 2000 >> ATACTSSscore.txt
python /oak/stanford/groups/akundaje/marinovg/code/ATAC/ATACTSSscore.py 4_46-ATAC-Seq-GSM4233076.2x36mers.GCF_003339765.1_Mmul_10_genomic.unique.dedup.TSS_profile 100 2000 >> ATACTSSscore.txt
python /oak/stanford/groups/akundaje/marinovg/code/ATAC/ATACTSSscore.py 10_46-ATAC-Seq-GSM4233080.2x36mers.GCF_003339765.1_Mmul_10_genomic.unique.dedup.TSS_profile 100 2000 >> ATACTSSscore.txt
python /oak/stanford/groups/akundaje/marinovg/code/ATAC/ATACTSSscore.py 7_25-ATAC-Seq-GSM3679605.2x36mers.GCF_003339765.1_Mmul_10_genomic.unique.dedup.TSS_profile 100 2000 >> ATACTSSscore.txt
python /oak/stanford/groups/akundaje/marinovg/code/ATAC/ATACTSSscore.py 11_32-ATAC-Seq-GSM3679616.2x36mers.GCF_003339765.1_Mmul_10_genomic.unique.dedup.TSS_profile 100 2000 >> ATACTSSscore.txt
python /oak/stanford/groups/akundaje/marinovg/code/ATAC/ATACTSSscore.py 3_14-ATAC-Seq-GSM3679592.2x36mers.GCF_003339765.1_Mmul_10_genomic.unique.dedup.TSS_profile 100 2000 >> ATACTSSscore.txt
python /oak/stanford/groups/akundaje/marinovg/code/ATAC/ATACTSSscore.py 3_22-ATAC-Seq-GSM3679593.2x36mers.GCF_003339765.1_Mmul_10_genomic.unique.dedup.TSS_profile 100 2000 >> ATACTSSscore.txt
python /oak/stanford/groups/akundaje/marinovg/code/ATAC/ATACTSSscore.py 3_32-ATAC-Seq-GSM3679594.2x36mers.GCF_003339765.1_Mmul_10_genomic.unique.dedup.TSS_profile 100 2000 >> ATACTSSscore.txt
python /oak/stanford/groups/akundaje/marinovg/code/ATAC/ATACTSSscore.py 4_14-ATAC-Seq-GSM3679595.2x36mers.GCF_003339765.1_Mmul_10_genomic.unique.dedup.TSS_profile 100 2000 >> ATACTSSscore.txt
python /oak/stanford/groups/akundaje/marinovg/code/ATAC/ATACTSSscore.py 6_22-ATAC-Seq-GSM3679599.2x36mers.GCF_003339765.1_Mmul_10_genomic.unique.dedup.TSS_profile 100 2000 >> ATACTSSscore.txt
python /oak/stanford/groups/akundaje/marinovg/code/ATAC/ATACTSSscore.py 6_32-ATAC-Seq-GSM3679601.2x36mers.GCF_003339765.1_Mmul_10_genomic.unique.dedup.TSS_profile 100 2000 >> ATACTSSscore.txt
python /oak/stanford/groups/akundaje/marinovg/code/ATAC/ATACTSSscore.py 7_22-ATAC-Seq-GSM3679604.2x36mers.GCF_003339765.1_Mmul_10_genomic.unique.dedup.TSS_profile 100 2000 >> ATACTSSscore.txt
python /oak/stanford/groups/akundaje/marinovg/code/ATAC/ATACTSSscore.py 8_32-ATAC-Seq-GSM3679610.2x36mers.GCF_003339765.1_Mmul_10_genomic.unique.dedup.TSS_profile 100 2000 >> ATACTSSscore.txt
python /oak/stanford/groups/akundaje/marinovg/code/ATAC/ATACTSSscore.py 10_14-ATAC-Seq-GSM3679611.2x36mers.GCF_003339765.1_Mmul_10_genomic.unique.dedup.TSS_profile 100 2000 >> ATACTSSscore.txt
python /oak/stanford/groups/akundaje/marinovg/code/ATAC/ATACTSSscore.py 10_25-ATAC-Seq-GSM3679612.2x36mers.GCF_003339765.1_Mmul_10_genomic.unique.dedup.TSS_profile 100 2000 >> ATACTSSscore.txt
python /oak/stanford/groups/akundaje/marinovg/code/ATAC/ATACTSSscore.py 10_32-ATAC-Seq-GSM3679613.2x36mers.GCF_003339765.1_Mmul_10_genomic.unique.dedup.TSS_profile 100 2000 >> ATACTSSscore.txt
python /oak/stanford/groups/akundaje/marinovg/code/ATAC/ATACTSSscore.py 11_14-ATAC-Seq-GSM3679614.2x36mers.GCF_003339765.1_Mmul_10_genomic.unique.dedup.TSS_profile 100 2000 >> ATACTSSscore.txt
python /oak/stanford/groups/akundaje/marinovg/code/ATAC/ATACTSSscore.py 6_2-ATAC-Seq-GSM3679597.2x36mers.GCF_003339765.1_Mmul_10_genomic.unique.dedup.TSS_profile 100 2000 >> ATACTSSscore.txt
python /oak/stanford/groups/akundaje/marinovg/code/ATAC/ATACTSSscore.py 6_14-ATAC-Seq-GSM3679598.2x36mers.GCF_003339765.1_Mmul_10_genomic.unique.dedup.TSS_profile 100 2000 >> ATACTSSscore.txt
python /oak/stanford/groups/akundaje/marinovg/code/ATAC/ATACTSSscore.py 7_32-ATAC-Seq-GSM3679606.2x36mers.GCF_003339765.1_Mmul_10_genomic.unique.dedup.TSS_profile 100 2000 >> ATACTSSscore.txt
python /oak/stanford/groups/akundaje/marinovg/code/ATAC/ATACTSSscore.py 8_25-ATAC-Seq-GSM3679609.2x36mers.GCF_003339765.1_Mmul_10_genomic.unique.dedup.TSS_profile 100 2000 >> ATACTSSscore.txt
python /oak/stanford/groups/akundaje/marinovg/code/ATAC/ATACTSSscore.py 8_2-ATAC-Seq-GSM3679607.2x36mers.GCF_003339765.1_Mmul_10_genomic.unique.dedup.TSS_profile 100 2000 >> ATACTSSscore.txt
python /oak/stanford/groups/akundaje/marinovg/code/ATAC/ATACTSSscore.py 8_22-ATAC-Seq-GSM3679608.2x36mers.GCF_003339765.1_Mmul_10_genomic.unique.dedup.TSS_profile 100 2000 >> ATACTSSscore.txt
python /oak/stanford/groups/akundaje/marinovg/code/ATAC/ATACTSSscore.py 11_25-ATAC-Seq-GSM3679615.2x36mers.GCF_003339765.1_Mmul_10_genomic.unique.dedup.TSS_profile 100 2000 >> ATACTSSscore.txt
python /oak/stanford/groups/akundaje/marinovg/code/ATAC/ATACTSSscore.py 7_2-ATAC-Seq-GSM3679602.2x36mers.GCF_003339765.1_Mmul_10_genomic.unique.dedup.TSS_profile 100 2000 >> ATACTSSscore.txt
python /oak/stanford/groups/akundaje/marinovg/code/ATAC/ATACTSSscore.py 7_14-ATAC-Seq-GSM3679603.2x36mers.GCF_003339765.1_Mmul_10_genomic.unique.dedup.TSS_profile 100 2000 >> ATACTSSscore.txt
rm *.fastq.gz
rm *.unique.bam
rm *.unique.bam.bai
rm *.chrM.bam
rm *.chrM.bam.bai