## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[10_14-ATAC-Seq-GSM3679611.2x36mers.GCF_003339765.1_Mmul_10_genomic.unique.bam] OUTPUT=10_14-ATAC-Seq-GSM3679611.2x36mers.GCF_003339765.1_Mmul_10_genomic.unique.dedup.bam METRICS_FILE=10_14-ATAC-Seq-GSM3679611.2x36mers.GCF_003339765.1_Mmul_10_genomic.unique.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Tue Oct 08 01:48:41 PDT 2024

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	57373633	0	0	17648439	0	0.307605	72949758

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1
2.0	1.455444
3.0	1.662874
4.0	1.757347
5.0	1.800374
6.0	1.81997
7.0	1.828895
8.0	1.83296
9.0	1.834812
10.0	1.835655
11.0	1.836039
12.0	1.836214
13.0	1.836293
14.0	1.83633
15.0	1.836346
16.0	1.836354
17.0	1.836357
18.0	1.836359
19.0	1.836359
20.0	1.83636
21.0	1.83636
22.0	1.83636
23.0	1.83636
24.0	1.83636
25.0	1.83636
26.0	1.83636
27.0	1.83636
28.0	1.83636
29.0	1.83636
30.0	1.83636
31.0	1.83636
32.0	1.83636
33.0	1.83636
34.0	1.83636
35.0	1.83636
36.0	1.83636
37.0	1.83636
38.0	1.83636
39.0	1.83636
40.0	1.83636
41.0	1.83636
42.0	1.83636
43.0	1.83636
44.0	1.83636
45.0	1.83636
46.0	1.83636
47.0	1.83636
48.0	1.83636
49.0	1.83636
50.0	1.83636
51.0	1.83636
52.0	1.83636
53.0	1.83636
54.0	1.83636
55.0	1.83636
56.0	1.83636
57.0	1.83636
58.0	1.83636
59.0	1.83636
60.0	1.83636
61.0	1.83636
62.0	1.83636
63.0	1.83636
64.0	1.83636
65.0	1.83636
66.0	1.83636
67.0	1.83636
68.0	1.83636
69.0	1.83636
70.0	1.83636
71.0	1.83636
72.0	1.83636
73.0	1.83636
74.0	1.83636
75.0	1.83636
76.0	1.83636
77.0	1.83636
78.0	1.83636
79.0	1.83636
80.0	1.83636
81.0	1.83636
82.0	1.83636
83.0	1.83636
84.0	1.83636
85.0	1.83636
86.0	1.83636
87.0	1.83636
88.0	1.83636
89.0	1.83636
90.0	1.83636
91.0	1.83636
92.0	1.83636
93.0	1.83636
94.0	1.83636
95.0	1.83636
96.0	1.83636
97.0	1.83636
98.0	1.83636
99.0	1.83636
100.0	1.83636