## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[HFD_ATAC-rep2-GSM4869703.2x36mers.GCF_003339765.1_Mmul_10_genomic.unique.bam] OUTPUT=HFD_ATAC-rep2-GSM4869703.2x36mers.GCF_003339765.1_Mmul_10_genomic.unique.dedup.bam METRICS_FILE=HFD_ATAC-rep2-GSM4869703.2x36mers.GCF_003339765.1_Mmul_10_genomic.unique.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Tue Oct 08 01:45:40 PDT 2024

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	41195829	0	0	1835280	0	0.04455	448517117

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1
2.0	1.912243
3.0	2.74443
4.0	3.503587
5.0	4.196122
6.0	4.827883
7.0	5.404202
8.0	5.929945
9.0	6.409551
10.0	6.847067
11.0	7.246189
12.0	7.610284
13.0	7.942428
14.0	8.245424
15.0	8.52183
16.0	8.773979
17.0	9.004
18.0	9.213835
19.0	9.405256
20.0	9.579878
21.0	9.739176
22.0	9.884495
23.0	10.01706
24.0	10.137993
25.0	10.248312
26.0	10.34895
27.0	10.440757
28.0	10.524506
29.0	10.600906
30.0	10.670602
31.0	10.734181
32.0	10.792181
33.0	10.845091
34.0	10.893357
35.0	10.937388
36.0	10.977555
37.0	11.014197
38.0	11.047623
39.0	11.078116
40.0	11.105933
41.0	11.131309
42.0	11.154458
43.0	11.175575
44.0	11.19484
45.0	11.212413
46.0	11.228445
47.0	11.243069
48.0	11.25641
49.0	11.268581
50.0	11.279683
51.0	11.289811
52.0	11.29905
53.0	11.307479
54.0	11.315168
55.0	11.322182
56.0	11.32858
57.0	11.334417
58.0	11.339742
59.0	11.344599
60.0	11.34903
61.0	11.353073
62.0	11.35676
63.0	11.360124
64.0	11.363193
65.0	11.365992
66.0	11.368546
67.0	11.370876
68.0	11.373001
69.0	11.37494
70.0	11.376708
71.0	11.378322
72.0	11.379794
73.0	11.381136
74.0	11.382361
75.0	11.383478
76.0	11.384498
77.0	11.385427
78.0	11.386276
79.0	11.387049
80.0	11.387755
81.0	11.388399
82.0	11.388987
83.0	11.389523
84.0	11.390011
85.0	11.390457
86.0	11.390864
87.0	11.391235
88.0	11.391574
89.0	11.391883
90.0	11.392164
91.0	11.392421
92.0	11.392656
93.0	11.39287
94.0	11.393065
95.0	11.393243
96.0	11.393405
97.0	11.393553
98.0	11.393688
99.0	11.393812
100.0	11.393924